RNA–Protein interactions for RNA: ENST00000618819.4

PTPN9-206, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PTPN9, Length 7,813 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-206ENST00000618819 MFAP1P55081 439 aaKnown RBP18.27■□□□□ 0.52
PTPN9-206ENST00000618819 NOL8Q76FK4 1167 aaKnown RBP18.27■□□□□ 0.52
PTPN9-206ENST00000618819 CALD1Q05682 793 aaKnown RBP18.26■□□□□ 0.51
PTPN9-206ENST00000618819 LMOD2Q6P5Q4 547 aa18.26■□□□□ 0.51
PTPN9-206ENST00000618819 FOXD4L5Q5VV16 416 aaPredicted RBP18.26■□□□□ 0.51
PTPN9-206ENST00000618819 FOXD4L4Q8WXT5 416 aaPredicted RBP18.26■□□□□ 0.51
PTPN9-206ENST00000618819 TSHZ2Q9NRE2 1034 aa18.26■□□□□ 0.51
PTPN9-206ENST00000618819 NPM1P06748 294 aaKnown RBP eCLIP18.25■□□□□ 0.51
PTPN9-206ENST00000618819 TAF7LQ5H9L4 462 aa18.25■□□□□ 0.51
PTPN9-206ENST00000618819 MTUS2Q5JR59 1369 aa18.25■□□□□ 0.51
PTPN9-206ENST00000618819 CDCA8Q53HL2 280 aa18.25■□□□□ 0.51
PTPN9-206ENST00000618819 IPO9Q96P70 1041 aaKnown RBP18.24■□□□□ 0.51
PTPN9-206ENST00000618819 HTATSF1O43719 755 aaKnown RBP18.23■□□□□ 0.51
PTPN9-206ENST00000618819 TPM3P06753 285 aa18.22■□□□□ 0.51
PTPN9-206ENST00000618819 USP35Q9P2H5 1018 aa18.21■□□□□ 0.5
PTPN9-206ENST00000618819 FAM13BQ9NYF5 915 aa18.19■□□□□ 0.5
PTPN9-206ENST00000618819 ZNF592Q92610 1267 aa18.19■□□□□ 0.5
PTPN9-206ENST00000618819 CFAP44Q96MT7 982 aa18.17■□□□□ 0.5
PTPN9-206ENST00000618819 RASSF8Q8NHQ8 419 aa18.17■□□□□ 0.5
PTPN9-206ENST00000618819 SOX12O15370 315 aa18.16■□□□□ 0.5
PTPN9-206ENST00000618819 APPP05067 770 aa18.16■□□□□ 0.5
PTPN9-206ENST00000618819 SIN3AQ96ST3 1273 aa18.16■□□□□ 0.5
PTPN9-206ENST00000618819 PES1O00541 588 aaKnown RBP18.16■□□□□ 0.5
PTPN9-206ENST00000618819 CEP89Q96ST8 783 aa18.16■□□□□ 0.5
PTPN9-206ENST00000618819 ITPRIPQ8IWB1 547 aa18.15■□□□□ 0.5
PTPN9-206ENST00000618819 TCERG1O14776 1098 aaKnown RBP18.14■□□□□ 0.49
PTPN9-206ENST00000618819 WWC1Q8IX03 1113 aa18.12■□□□□ 0.49
PTPN9-206ENST00000618819 PHF14O94880 888 aa18.11■□□□□ 0.49
PTPN9-206ENST00000618819 SLC4A3P48751 1232 aa18.11■□□□□ 0.49
PTPN9-206ENST00000618819 GPS2Q13227 327 aa18.11■□□□□ 0.49
PTPN9-206ENST00000618819 FOXD4L6Q3SYB3 417 aaPredicted RBP18.11■□□□□ 0.49
PTPN9-206ENST00000618819 FOXD4L3Q6VB84 417 aaPredicted RBP18.11■□□□□ 0.49
PTPN9-206ENST00000618819 POGKQ9P215 609 aa18.11■□□□□ 0.49
PTPN9-206ENST00000618819 BCL11BQ9C0K0 894 aaPredicted RBP18.11■□□□□ 0.49
PTPN9-206ENST00000618819 CSPP1Q1MSJ5 1256 aa18.11■□□□□ 0.49
PTPN9-206ENST00000618819 TRIM6-TRIM34B2RNG4 842 aa18.1■□□□□ 0.49
PTPN9-206ENST00000618819 RRP12Q5JTH9 1297 aaKnown RBP18.1■□□□□ 0.49
PTPN9-206ENST00000618819 GSE1Q14687 1217 aa18.09■□□□□ 0.49
PTPN9-206ENST00000618819 RWDD1Q9H446 243 aaPredicted RBP18.09■□□□□ 0.49
PTPN9-206ENST00000618819 RCAN3Q9UKA8 241 aa18.08■□□□□ 0.48
PTPN9-206ENST00000618819 TEX35Q5T0J7 233 aa18.07■□□□□ 0.48
PTPN9-206ENST00000618819 CCDC34Q96HJ3 373 aa18.06■□□□□ 0.48
PTPN9-206ENST00000618819 KCNH8Q96L42 1107 aa18.05■□□□□ 0.48
PTPN9-206ENST00000618819 TPD52L1Q16890 204 aaPredicted RBP18.05■□□□□ 0.48
PTPN9-206ENST00000618819 DDX11L8A8MPP1 907 aa18.05■□□□□ 0.48
PTPN9-206ENST00000618819 DDX49Q9Y6V7 483 aaKnown RBP18.04■□□□□ 0.48
PTPN9-206ENST00000618819 PKNOX2Q96KN3 472 aa18.04■□□□□ 0.48
PTPN9-206ENST00000618819 SF3A1Q15459 793 aaKnown RBP18.03■□□□□ 0.48
PTPN9-206ENST00000618819 GOLGA6L19H0YKK7 550 aa18.03■□□□□ 0.48
PTPN9-206ENST00000618819 IPO8O15397 1037 aaKnown RBP18.02■□□□□ 0.48
PTPN9-206ENST00000618819 CCDC70Q6NSX1 233 aa18.02■□□□□ 0.48
PTPN9-206ENST00000618819 ZNF330Q9Y3S2 320 aaPredicted RBP18.01■□□□□ 0.47
PTPN9-206ENST00000618819 TSR1Q2NL82 804 aaKnown RBP18.01■□□□□ 0.47
PTPN9-206ENST00000618819 RTF1Q92541 710 aaKnown RBP18.01■□□□□ 0.47
PTPN9-206ENST00000618819 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18■□□□□ 0.47
PTPN9-206ENST00000618819 MORC1Q86VD1 984 aa18■□□□□ 0.47
PTPN9-206ENST00000618819 NOM1Q5C9Z4 860 aaKnown RBP17.99■□□□□ 0.47
PTPN9-206ENST00000618819 VPS53Q5VIR6 699 aa17.99■□□□□ 0.47
PTPN9-206ENST00000618819 CLIP1P30622 1438 aa17.99■□□□□ 0.47
PTPN9-206ENST00000618819 KIF16BQ96L93 1317 aa17.99■□□□□ 0.47
PTPN9-206ENST00000618819 BECN2A8MW95 431 aa17.99■□□□□ 0.47
PTPN9-206ENST00000618819 PMFBP1Q8TBY8 1022 aa17.99■□□□□ 0.47
PTPN9-206ENST00000618819 MAP7D2Q96T17 732 aa17.98■□□□□ 0.47
PTPN9-206ENST00000618819 CHMP3Q9Y3E7 222 aa17.98■□□□□ 0.47
PTPN9-206ENST00000618819 GORABQ5T7V8 394 aa17.97■□□□□ 0.47
PTPN9-206ENST00000618819 TMF1P82094 1093 aa17.97■□□□□ 0.47
PTPN9-206ENST00000618819 PODXL2Q9NZ53 605 aa17.97■□□□□ 0.47
PTPN9-206ENST00000618819 ST18O60284 1047 aa17.96■□□□□ 0.47
PTPN9-206ENST00000618819 CCER2I3L3R5 266 aa17.96■□□□□ 0.47
PTPN9-206ENST00000618819 HOMER1Q86YM7 354 aa17.96■□□□□ 0.46
PTPN9-206ENST00000618819 PLCD4Q9BRC7 762 aa17.95■□□□□ 0.46
PTPN9-206ENST00000618819 H3BQV1 296 aa17.95■□□□□ 0.46
PTPN9-206ENST00000618819 IFFO2Q5TF58 517 aa17.95■□□□□ 0.46
PTPN9-206ENST00000618819 CLUAP1Q96AJ1 413 aa17.95■□□□□ 0.46
PTPN9-206ENST00000618819 SAFB2Q14151 953 aaKnown RBP eCLIP17.95■□□□□ 0.46
PTPN9-206ENST00000618819 TOMM22Q9NS69 142 aa17.94■□□□□ 0.46
PTPN9-206ENST00000618819 MARCH6O60337 910 aa17.94■□□□□ 0.46
PTPN9-206ENST00000618819 CCDC180Q9P1Z9 1646 aa17.94■□□□□ 0.46
PTPN9-206ENST00000618819 GPATCH3Q96I76 525 aa17.93■□□□□ 0.46
PTPN9-206ENST00000618819 TPM1P09493 284 aa17.93■□□□□ 0.46
PTPN9-206ENST00000618819 PCMTD1Q96MG8 357 aaPredicted RBP17.92■□□□□ 0.46
PTPN9-206ENST00000618819 SRPK2P78362 688 aaKnown RBP17.92■□□□□ 0.46
PTPN9-206ENST00000618819 ABCC9O60706 1549 aa17.92■□□□□ 0.46
PTPN9-206ENST00000618819 DCAF11Q8TEB1 546 aa17.91■□□□□ 0.46
PTPN9-206ENST00000618819 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.91■□□□□ 0.46
PTPN9-206ENST00000618819 FAM43AQ8N2R8 423 aa17.91■□□□□ 0.46
PTPN9-206ENST00000618819 SMC4Q9NTJ3 1288 aa17.9■□□□□ 0.46
PTPN9-206ENST00000618819 RUFY1Q96T51 708 aa17.9■□□□□ 0.46
PTPN9-206ENST00000618819 ZCCHC6Q5VYS8 1495 aaKnown RBP17.9■□□□□ 0.46
PTPN9-206ENST00000618819 FBXW7Q969H0 707 aa17.9■□□□□ 0.46
PTPN9-206ENST00000618819 SLC4A10Q6U841 1118 aa17.89■□□□□ 0.45
PTPN9-206ENST00000618819 H0YHG0 523 aa17.89■□□□□ 0.45
PTPN9-206ENST00000618819 TPM2P07951 284 aa17.89■□□□□ 0.45
PTPN9-206ENST00000618819 R3HCC1Q9Y3T6 440 aaKnown RBP17.89■□□□□ 0.45
PTPN9-206ENST00000618819 SKOR2Q2VWA4 1001 aaPredicted RBP17.89■□□□□ 0.45
PTPN9-206ENST00000618819 AK7Q96M32 723 aa17.87■□□□□ 0.45
PTPN9-206ENST00000618819 U2AF1L5P0DN76 240 aaPredicted RBP17.87■□□□□ 0.45
PTPN9-206ENST00000618819 U2AF1Q01081 240 aaKnown RBP eCLIP17.87■□□□□ 0.45
PTPN9-206ENST00000618819 HSP90AB3PQ58FF7 597 aa17.87■□□□□ 0.45
PTPN9-206ENST00000618819 KTN1Q86UP2 1357 aaKnown RBP17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms