RNA–Protein interactions for RNA: ENST00000612130.4

UBE2F-223, Transcript of ubiquitin conjugating enzyme E2 F (putative), human

APPRIS P1 TSL 5 BASIC

Gene UBE2F, Length 2,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2F-223	ENST00000612130	SPATA31E1	Q6ZUB1	1445 aa		18.77	■□□□□ 0.6
UBE2F-223	ENST00000612130	LAMC3	Q9Y6N6	1575 aa		18.77	■□□□□ 0.6
UBE2F-223	ENST00000612130	FAM9B	Q8IZU0	186 aa		18.77	■□□□□ 0.6
UBE2F-223	ENST00000612130	NES	P48681	1621 aa		18.76	■□□□□ 0.59
UBE2F-223	ENST00000612130	SMG6	Q86US8	1419 aa	Known RBP	18.76	■□□□□ 0.59
UBE2F-223	ENST00000612130	C11orf95	C9JLR9	678 aa	Predicted RBP	18.76	■□□□□ 0.59
UBE2F-223	ENST00000612130	B4GALNT3	Q6L9W6	998 aa		18.76	■□□□□ 0.59
UBE2F-223	ENST00000612130	ROCK1	Q13464	1354 aa		18.76	■□□□□ 0.59
UBE2F-223	ENST00000612130	CHIC2	Q9UKJ5	165 aa		18.75	■□□□□ 0.59
UBE2F-223	ENST00000612130	ANKRD30B	Q9BXX2	1392 aa		18.75	■□□□□ 0.59
UBE2F-223	ENST00000612130	EPRS	P07814	1512 aa	Known RBP	18.75	■□□□□ 0.59
UBE2F-223	ENST00000612130	KIF7	Q2M1P5	1343 aa		18.72	■□□□□ 0.59
UBE2F-223	ENST00000612130	TDRD9	Q8NDG6	1382 aa	Known RBP	18.71	■□□□□ 0.59
UBE2F-223	ENST00000612130	NOP58	Q9Y2X3	529 aa	Known RBP	18.71	■□□□□ 0.59
UBE2F-223	ENST00000612130	WDR62	O43379	1518 aa		18.7	■□□□□ 0.58
UBE2F-223	ENST00000612130	DNMT1	P26358	1616 aa	Known RBP	18.69	■□□□□ 0.58
UBE2F-223	ENST00000612130	RNF123	Q5XPI4	1314 aa		18.69	■□□□□ 0.58
UBE2F-223	ENST00000612130	DAPK1	P53355	1430 aa		18.69	■□□□□ 0.58
UBE2F-223	ENST00000612130	NBPF8	Q3BBV2	869 aa		18.68	■□□□□ 0.58
UBE2F-223	ENST00000612130	IQGAP2	Q13576	1575 aa		18.68	■□□□□ 0.58
UBE2F-223	ENST00000612130	DEK	P35659	375 aa	Known RBP	18.67	■□□□□ 0.58
UBE2F-223	ENST00000612130	CDK13	Q14004	1512 aa	Known RBP	18.66	■□□□□ 0.58
UBE2F-223	ENST00000612130	NUDC	Q9Y266	331 aa		18.65	■□□□□ 0.58
UBE2F-223	ENST00000612130	DHX29	Q7Z478	1369 aa	Known RBP	18.65	■□□□□ 0.58
UBE2F-223	ENST00000612130	MBD5	Q9P267	1494 aa		18.65	■□□□□ 0.58
UBE2F-223	ENST00000612130	FOXD1	Q16676	465 aa		18.63	■□□□□ 0.57
UBE2F-223	ENST00000612130	ABCC5	O15440	1437 aa		18.62	■□□□□ 0.57
UBE2F-223	ENST00000612130	TARBP1	Q13395	1621 aa	Known RBP	18.61	■□□□□ 0.57
UBE2F-223	ENST00000612130	KIF14	Q15058	1648 aa		18.61	■□□□□ 0.57
UBE2F-223	ENST00000612130	ARID4B	Q4LE39	1312 aa	Predicted RBP	18.61	■□□□□ 0.57
UBE2F-223	ENST00000612130	PBRM1	Q86U86	1689 aa		18.59	■□□□□ 0.57
UBE2F-223	ENST00000612130	ANP32A	P39687	249 aa	Known RBP	18.58	■□□□□ 0.57
UBE2F-223	ENST00000612130	PZP	P20742	1482 aa		18.58	■□□□□ 0.56
UBE2F-223	ENST00000612130	ADAMTS12	P58397	1594 aa		18.57	■□□□□ 0.56
UBE2F-223	ENST00000612130	CCDC136	Q96JN2	1154 aa		18.57	■□□□□ 0.56
UBE2F-223	ENST00000612130	BCORL1	Q5H9F3	1711 aa		18.57	■□□□□ 0.56
UBE2F-223	ENST00000612130	SLC4A1AP	Q9BWU0	796 aa	Known RBP	18.56	■□□□□ 0.56
UBE2F-223	ENST00000612130	KDM5C	P41229	1560 aa		18.56	■□□□□ 0.56
UBE2F-223	ENST00000612130	IPO9	Q96P70	1041 aa	Known RBP	18.56	■□□□□ 0.56
UBE2F-223	ENST00000612130	ROCK2	O75116	1388 aa	Known RBP	18.55	■□□□□ 0.56
UBE2F-223	ENST00000612130	PDS5B	Q9NTI5	1447 aa		18.55	■□□□□ 0.56
UBE2F-223	ENST00000612130	PAK3	O75914	559 aa	Predicted RBP	18.55	■□□□□ 0.56
UBE2F-223	ENST00000612130	USP47	Q96K76	1375 aa		18.55	■□□□□ 0.56
UBE2F-223	ENST00000612130	ADGB	Q8N7X0	1667 aa		18.54	■□□□□ 0.56
UBE2F-223	ENST00000612130	KIAA1107	Q9UPP5	1409 aa		18.52	■□□□□ 0.56
UBE2F-223	ENST00000612130	ADGRL2	O95490	1459 aa		18.49	■□□□□ 0.55
UBE2F-223	ENST00000612130	NBR1	Q14596	966 aa		18.49	■□□□□ 0.55
UBE2F-223	ENST00000612130	RALGAPB	Q86X10	1494 aa		18.49	■□□□□ 0.55
UBE2F-223	ENST00000612130	UHRF1BP1	Q6BDS2	1440 aa		18.49	■□□□□ 0.55
UBE2F-223	ENST00000612130	KTN1	Q86UP2	1357 aa	Known RBP	18.49	■□□□□ 0.55
UBE2F-223	ENST00000612130	PNISR	Q8TF01	805 aa	Known RBP	18.49	■□□□□ 0.55
UBE2F-223	ENST00000612130	ITSN2	Q9NZM3	1697 aa		18.48	■□□□□ 0.55
UBE2F-223	ENST00000612130	LRPPRC	P42704	1394 aa	Known RBP	18.48	■□□□□ 0.55
UBE2F-223	ENST00000612130	KIAA0556	O60303	1618 aa		18.47	■□□□□ 0.55
UBE2F-223	ENST00000612130	CROCC2	H7BZ55	1655 aa		18.47	■□□□□ 0.55
UBE2F-223	ENST00000612130	NUP153	P49790	1475 aa	Known RBP	18.47	■□□□□ 0.55
UBE2F-223	ENST00000612130	ZBTB47	Q9UFB7	747 aa	Predicted RBP	18.47	■□□□□ 0.55
UBE2F-223	ENST00000612130	RTL5	Q5HYW3	569 aa	Predicted RBP	18.46	■□□□□ 0.55
UBE2F-223	ENST00000612130	ARHGEF12	Q9NZN5	1544 aa		18.46	■□□□□ 0.55
UBE2F-223	ENST00000612130	RAPGEF6	Q8TEU7	1601 aa		18.46	■□□□□ 0.55
UBE2F-223	ENST00000612130	CAMSAP2	Q08AD1	1489 aa		18.46	■□□□□ 0.55
UBE2F-223	ENST00000612130	KIF15	Q9NS87	1388 aa		18.45	■□□□□ 0.54
UBE2F-223	ENST00000612130	BRD4	O60885	1362 aa	Predicted RBP	18.44	■□□□□ 0.54
UBE2F-223	ENST00000612130	ZNF644	Q9H582	1327 aa	Predicted RBP	18.43	■□□□□ 0.54
UBE2F-223	ENST00000612130	TMC1	Q8TDI8	760 aa		18.43	■□□□□ 0.54
UBE2F-223	ENST00000612130		E9PCH4	1651 aa		18.42	■□□□□ 0.54
UBE2F-223	ENST00000612130	DISP1	Q96F81	1524 aa		18.42	■□□□□ 0.54
UBE2F-223	ENST00000612130	TRO	Q12816	1431 aa	Predicted RBP	18.4	■□□□□ 0.54
UBE2F-223	ENST00000612130	ADCY10	Q96PN6	1610 aa		18.4	■□□□□ 0.54
UBE2F-223	ENST00000612130	MYBBP1A	Q9BQG0	1328 aa	Known RBP	18.39	■□□□□ 0.54
UBE2F-223	ENST00000612130	KIAA0586	Q9BVV6	1533 aa		18.39	■□□□□ 0.53
UBE2F-223	ENST00000612130	TCERG1	O14776	1098 aa	Known RBP	18.39	■□□□□ 0.53
UBE2F-223	ENST00000612130	RRP1	P56182	461 aa	Known RBP	18.39	■□□□□ 0.53
UBE2F-223	ENST00000612130	ARID3C	A6NKF2	412 aa		18.38	■□□□□ 0.53
UBE2F-223	ENST00000612130	RALBP1	Q15311	655 aa		18.38	■□□□□ 0.53
UBE2F-223	ENST00000612130	POLR3GL	Q9BT43	218 aa		18.38	■□□□□ 0.53
UBE2F-223	ENST00000612130	ANKRD30A	Q9BXX3	1397 aa		18.37	■□□□□ 0.53
UBE2F-223	ENST00000612130	KDM5D	Q9BY66	1539 aa		18.36	■□□□□ 0.53
UBE2F-223	ENST00000612130	GPATCH8	Q9UKJ3	1502 aa	Known RBP	18.36	■□□□□ 0.53
UBE2F-223	ENST00000612130	PKD2	Q13563	968 aa		18.35	■□□□□ 0.53
UBE2F-223	ENST00000612130	ZNF326	Q5BKZ1	582 aa	Known RBP	18.35	■□□□□ 0.53
UBE2F-223	ENST00000612130	MS4A1	P11836	297 aa		18.34	■□□□□ 0.53
UBE2F-223	ENST00000612130	SHANK2	Q9UPX8	1470 aa		18.34	■□□□□ 0.53
UBE2F-223	ENST00000612130	PDE3B	Q13370	1112 aa		18.34	■□□□□ 0.53
UBE2F-223	ENST00000612130	ANKRD50	Q9ULJ7	1429 aa		18.33	■□□□□ 0.53
UBE2F-223	ENST00000612130	CFDP1	Q9UEE9	299 aa	Predicted RBP	18.33	■□□□□ 0.52
UBE2F-223	ENST00000612130	CNGB1	Q14028	1251 aa	Predicted RBP	18.32	■□□□□ 0.52
UBE2F-223	ENST00000612130	CARD11	Q9BXL7	1154 aa		18.32	■□□□□ 0.52
UBE2F-223	ENST00000612130	USP35	Q9P2H5	1018 aa		18.32	■□□□□ 0.52
UBE2F-223	ENST00000612130	CEP170	Q5SW79	1584 aa		18.32	■□□□□ 0.52
UBE2F-223	ENST00000612130	RCAN3	Q9UKA8	241 aa		18.31	■□□□□ 0.52
UBE2F-223	ENST00000612130	PRG4	Q92954	1404 aa	Predicted RBP	18.31	■□□□□ 0.52
UBE2F-223	ENST00000612130	ZMYM4	Q5VZL5	1548 aa		18.31	■□□□□ 0.52
UBE2F-223	ENST00000612130	INSR	P06213	1382 aa		18.3	■□□□□ 0.52
UBE2F-223	ENST00000612130	EXOC6	Q8TAG9	804 aa		18.29	■□□□□ 0.52
UBE2F-223	ENST00000612130	PARD3	Q8TEW0	1356 aa		18.28	■□□□□ 0.52
UBE2F-223	ENST00000612130	PDE4A	P27815	886 aa		18.28	■□□□□ 0.52
UBE2F-223	ENST00000612130	BACH2	Q9BYV9	841 aa		18.28	■□□□□ 0.52
UBE2F-223	ENST00000612130	NLRP13	Q86W25	1043 aa		18.27	■□□□□ 0.52
UBE2F-223	ENST00000612130	MRC2	Q9UBG0	1479 aa		18.27	■□□□□ 0.51

Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms