RNA–Protein interactions for RNA: ENST00000587470.1

VMP1-205, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-205ENST00000587470 HOXB1P14653 301 aaPredicted RBP12.51□□□□□ -0.41
VMP1-205ENST00000587470 MFRPQ9BY79 579 aa12.51□□□□□ -0.41
VMP1-205ENST00000587470 FAM205CA6NFA0 338 aa12.49□□□□□ -0.41
VMP1-205ENST00000587470 NLRP6P59044 892 aa12.49□□□□□ -0.41
VMP1-205ENST00000587470 HS6ST3Q8IZP7 471 aa12.47□□□□□ -0.41
VMP1-205ENST00000587470 MMRN1Q13201 1228 aa12.46□□□□□ -0.41
VMP1-205ENST00000587470 CHGAP10645 457 aaKnown RBP12.45□□□□□ -0.42
VMP1-205ENST00000587470 DOK7Q18PE1 504 aa12.45□□□□□ -0.42
VMP1-205ENST00000587470 AMER1Q5JTC6 1135 aaPredicted RBP12.42□□□□□ -0.42
VMP1-205ENST00000587470 GPR153Q6NV75 609 aa12.4□□□□□ -0.42
VMP1-205ENST00000587470 KIF3CO14782 793 aa12.39□□□□□ -0.43
VMP1-205ENST00000587470 ZNF710Q8N1W2 664 aa12.39□□□□□ -0.43
VMP1-205ENST00000587470 ZSWIM6Q9HCJ5 1215 aa12.38□□□□□ -0.43
VMP1-205ENST00000587470 DCAF8L2P0C7V8 631 aa12.37□□□□□ -0.43
VMP1-205ENST00000587470 DNAJC5Q9H3Z4 198 aa12.37□□□□□ -0.43
VMP1-205ENST00000587470 RIMBP2O15034 1052 aa12.32□□□□□ -0.44
VMP1-205ENST00000587470 RTN4Q9NQC3 1192 aaKnown RBP12.32□□□□□ -0.44
VMP1-205ENST00000587470 ERBB3P21860 1342 aa12.32□□□□□ -0.44
VMP1-205ENST00000587470 C2orf72A6NCS6 295 aa12.29□□□□□ -0.44
VMP1-205ENST00000587470 PPP1R37O75864 691 aa12.29□□□□□ -0.44
VMP1-205ENST00000587470 VARS2Q5ST30 1063 aaKnown RBP12.29□□□□□ -0.44
VMP1-205ENST00000587470 NKX1-1Q15270 411 aaPredicted RBP12.28□□□□□ -0.44
VMP1-205ENST00000587470 ARSIQ5FYB1 569 aa12.27□□□□□ -0.45
VMP1-205ENST00000587470 KHSRPQ92945 711 aaKnown RBP eCLIP12.27□□□□□ -0.45
VMP1-205ENST00000587470 RYDENQ9NUL5 291 aaKnown RBP12.27□□□□□ -0.45
VMP1-205ENST00000587470 ZNF687Q8N1G0 1237 aa12.24□□□□□ -0.45
VMP1-205ENST00000587470 SLC34A2O95436 690 aa12.19□□□□□ -0.46
VMP1-205ENST00000587470 ZNF316A6NFI3 1004 aaPredicted RBP12.18□□□□□ -0.46
VMP1-205ENST00000587470 GTPBP6O43824 516 aaPredicted RBP12.15□□□□□ -0.46
VMP1-205ENST00000587470 KDM4FA0A1W2PPD8 638 aa12.13□□□□□ -0.47
VMP1-205ENST00000587470 PCDHGA4Q9Y5G9 962 aa12.13□□□□□ -0.47
VMP1-205ENST00000587470 NUDT7P0C024 238 aa12.12□□□□□ -0.47
VMP1-205ENST00000587470 POTEEQ6S8J3 1075 aa12.12□□□□□ -0.47
VMP1-205ENST00000587470 TMC2Q8TDI7 906 aa12.12□□□□□ -0.47
VMP1-205ENST00000587470 BBXQ8WY36 941 aaPredicted RBP12.11□□□□□ -0.47
VMP1-205ENST00000587470 LHX6Q9UPM6 363 aa12.08□□□□□ -0.48
VMP1-205ENST00000587470 FOXK1P85037 733 aa12.06□□□□□ -0.48
VMP1-205ENST00000587470 PTCD2Q8WV60 388 aaKnown RBP12.04□□□□□ -0.48
VMP1-205ENST00000587470 RNF166Q96A37 237 aaPredicted RBP12.04□□□□□ -0.48
VMP1-205ENST00000587470 GPHNQ9NQX3 736 aaPredicted RBP12.04□□□□□ -0.48
VMP1-205ENST00000587470 LSM11P83369 360 aaKnown RBP eCLIP12.02□□□□□ -0.49
VMP1-205ENST00000587470 MYT1LQ9UL68 1186 aa12.02□□□□□ -0.49
VMP1-205ENST00000587470 DSG2Q14126 1118 aa12.01□□□□□ -0.49
VMP1-205ENST00000587470 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.01□□□□□ -0.49
VMP1-205ENST00000587470 PLPP6Q8IY26 295 aa12□□□□□ -0.49
VMP1-205ENST00000587470 PBX2P40425 430 aa11.97□□□□□ -0.49
VMP1-205ENST00000587470 ANKRD13DQ6ZTN6 518 aa11.97□□□□□ -0.49
VMP1-205ENST00000587470 SPRYD3Q8NCJ5 442 aa11.97□□□□□ -0.49
VMP1-205ENST00000587470 AXIN2Q9Y2T1 843 aa11.97□□□□□ -0.49
VMP1-205ENST00000587470 PDE4AP27815 886 aa11.96□□□□□ -0.49
VMP1-205ENST00000587470 PTGER2P43116 358 aa11.96□□□□□ -0.49
VMP1-205ENST00000587470 CRISPLD2Q9H0B8 497 aa11.96□□□□□ -0.49
VMP1-205ENST00000587470 NCKAP5LQ9HCH0 1330 aa11.92□□□□□ -0.5
VMP1-205ENST00000587470 OXER1Q8TDS5 423 aa11.9□□□□□ -0.5
VMP1-205ENST00000587470 PAXIP1Q6ZW49 1069 aaPredicted RBP11.89□□□□□ -0.51
VMP1-205ENST00000587470 PSDA5PKW4 1024 aaPredicted RBP11.88□□□□□ -0.51
VMP1-205ENST00000587470 PPP1R15BQ5SWA1 713 aa11.88□□□□□ -0.51
VMP1-205ENST00000587470 LARP6Q9BRS8 491 aaKnown RBP11.88□□□□□ -0.51
VMP1-205ENST00000587470 ARHGAP33O14559 1287 aa11.87□□□□□ -0.51
VMP1-205ENST00000587470 CADPS2Q86UW7 1296 aa11.87□□□□□ -0.51
VMP1-205ENST00000587470 CFAP44Q96MT7 982 aa11.87□□□□□ -0.51
VMP1-205ENST00000587470 DMRTA1Q5VZB9 504 aa11.86□□□□□ -0.51
VMP1-205ENST00000587470 DDX27Q96GQ7 796 aaKnown RBP11.85□□□□□ -0.51
VMP1-205ENST00000587470 TBC1D12O60347 775 aa11.84□□□□□ -0.51
VMP1-205ENST00000587470 ADGRD1Q6QNK2 874 aa11.84□□□□□ -0.51
VMP1-205ENST00000587470 HRO43593 1189 aa11.83□□□□□ -0.52
VMP1-205ENST00000587470 PSEN2P49810 448 aa11.83□□□□□ -0.52
VMP1-205ENST00000587470 MFSD10Q14728 455 aa11.83□□□□□ -0.52
VMP1-205ENST00000587470 TK2O00142 265 aa11.79□□□□□ -0.52
VMP1-205ENST00000587470 PPP4R3BQ5MIZ7 849 aa11.78□□□□□ -0.52
VMP1-205ENST00000587470 UPF1Q92900 1129 aaKnown RBP eCLIP11.78□□□□□ -0.52
VMP1-205ENST00000587470 ANO8Q9HCE9 1232 aaPredicted RBP11.75□□□□□ -0.53
VMP1-205ENST00000587470 FOSBP53539 338 aa11.72□□□□□ -0.53
VMP1-205ENST00000587470 KCNK17Q96T54 332 aa11.7□□□□□ -0.54
VMP1-205ENST00000587470 BCL2L12Q9HB09 334 aa11.7□□□□□ -0.54
VMP1-205ENST00000587470 EMILIN3Q9NT22 766 aa11.7□□□□□ -0.54
VMP1-205ENST00000587470 MAP3K9P80192 1104 aa11.69□□□□□ -0.54
VMP1-205ENST00000587470 ZNF454Q8N9F8 522 aa11.69□□□□□ -0.54
VMP1-205ENST00000587470 CAMK2BQ13554 666 aa11.68□□□□□ -0.54
VMP1-205ENST00000587470 VPS9D1Q9Y2B5 631 aa11.68□□□□□ -0.54
VMP1-205ENST00000587470 EVI5O60447 810 aa11.66□□□□□ -0.54
VMP1-205ENST00000587470 SLC4A5Q9BY07 1137 aa11.66□□□□□ -0.54
VMP1-205ENST00000587470 JPH4Q96JJ6 628 aa11.65□□□□□ -0.54
VMP1-205ENST00000587470 WDR70Q9NW82 654 aa11.65□□□□□ -0.54
VMP1-205ENST00000587470 HCSTQ9UBK5 93 aa11.65□□□□□ -0.54
VMP1-205ENST00000587470 BHMG1C9JSJ3 638 aaPredicted RBP11.63□□□□□ -0.55
VMP1-205ENST00000587470 ADAM33Q9BZ11 813 aa11.62□□□□□ -0.55
VMP1-205ENST00000587470 ZBED2Q9BTP6 218 aa11.61□□□□□ -0.55
VMP1-205ENST00000587470 TSHZ2Q9NRE2 1034 aa11.61□□□□□ -0.55
VMP1-205ENST00000587470 E2F4Q16254 413 aa11.59□□□□□ -0.55
VMP1-205ENST00000587470 ZDHHC16Q969W1 377 aa11.58□□□□□ -0.56
VMP1-205ENST00000587470 KCTD12Q96CX2 325 aaKnown RBP11.58□□□□□ -0.56
VMP1-205ENST00000587470 PLA2G2EQ9NZK7 142 aa11.58□□□□□ -0.56
VMP1-205ENST00000587470 DPYSL4O14531 572 aa11.57□□□□□ -0.56
VMP1-205ENST00000587470 PTPREP23469 700 aa11.57□□□□□ -0.56
VMP1-205ENST00000587470 PCDHGA10Q9Y5H3 936 aa11.57□□□□□ -0.56
VMP1-205ENST00000587470 PLCB2Q00722 1185 aa11.56□□□□□ -0.56
VMP1-205ENST00000587470 KCNH8Q96L42 1107 aa11.55□□□□□ -0.56
VMP1-205ENST00000587470 ARIH1Q9Y4X5 557 aaPredicted RBP11.51□□□□□ -0.57
VMP1-205ENST00000587470 COL9A1P20849 921 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms