RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 CHGAP10645 457 aaKnown RBP4.14□□□□□ -1.75
SMCHD1-211ENST00000584897 SLC24A1O60721 1099 aa4.13□□□□□ -1.75
SMCHD1-211ENST00000584897 MICALL2Q8IY33 904 aa4.13□□□□□ -1.75
SMCHD1-211ENST00000584897 WDR70Q9NW82 654 aa4.13□□□□□ -1.75
SMCHD1-211ENST00000584897 HOXB1P14653 301 aaPredicted RBP4.12□□□□□ -1.75
SMCHD1-211ENST00000584897 SLC4A3P48751 1232 aa4.11□□□□□ -1.75
SMCHD1-211ENST00000584897 CDAN1Q8IWY9 1227 aa4.11□□□□□ -1.75
SMCHD1-211ENST00000584897 PDCD7Q8N8D1 485 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-211ENST00000584897 PHF8Q9UPP1 1060 aa4.11□□□□□ -1.75
SMCHD1-211ENST00000584897 GOLGA8CPA6NN73 597 aa4.1□□□□□ -1.75
SMCHD1-211ENST00000584897 ILDR1Q86SU0 546 aaPredicted RBP4.1□□□□□ -1.75
SMCHD1-211ENST00000584897 NECTIN2Q92692 538 aa4.1□□□□□ -1.75
SMCHD1-211ENST00000584897 PPP4R3BQ5MIZ7 849 aa4.1□□□□□ -1.75
SMCHD1-211ENST00000584897 ST18O60284 1047 aa4.09□□□□□ -1.76
SMCHD1-211ENST00000584897 SLC34A2O95436 690 aa4.08□□□□□ -1.76
SMCHD1-211ENST00000584897 BBXQ8WY36 941 aaPredicted RBP4.08□□□□□ -1.76
SMCHD1-211ENST00000584897 FAM205CA6NFA0 338 aa4.07□□□□□ -1.76
SMCHD1-211ENST00000584897 POTEFA5A3E0 1075 aa4.06□□□□□ -1.76
SMCHD1-211ENST00000584897 POTEJP0CG39 1038 aa4.06□□□□□ -1.76
SMCHD1-211ENST00000584897 SHROOM4Q9ULL8 1493 aa4.06□□□□□ -1.76
SMCHD1-211ENST00000584897 POTEB2H3BUK9 544 aa4.06□□□□□ -1.76
SMCHD1-211ENST00000584897 HDGFP51858 240 aaKnown RBP4.06□□□□□ -1.76
SMCHD1-211ENST00000584897 ZNF687Q8N1G0 1237 aa4.06□□□□□ -1.76
SMCHD1-211ENST00000584897 MAP3K9P80192 1104 aa4.05□□□□□ -1.76
SMCHD1-211ENST00000584897 SPRYD3Q8NCJ5 442 aa4.05□□□□□ -1.76
SMCHD1-211ENST00000584897 RB1CC1Q8TDY2 1594 aa4.05□□□□□ -1.76
SMCHD1-211ENST00000584897 TULP1O00294 542 aaPredicted RBP4.05□□□□□ -1.76
SMCHD1-211ENST00000584897 RGL2O15211 777 aa4.04□□□□□ -1.76
SMCHD1-211ENST00000584897 SPDYE16A6NNV3 312 aaPredicted RBP4.04□□□□□ -1.76
SMCHD1-211ENST00000584897 PKD2Q13563 968 aa4.04□□□□□ -1.76
SMCHD1-211ENST00000584897 FBXW7Q969H0 707 aa4.03□□□□□ -1.76
SMCHD1-211ENST00000584897 NBPF3Q9H094 633 aa4.03□□□□□ -1.76
SMCHD1-211ENST00000584897 CUX2O14529 1486 aa4.03□□□□□ -1.76
SMCHD1-211ENST00000584897 TK2O00142 265 aa4.03□□□□□ -1.76
SMCHD1-211ENST00000584897 HS3ST6Q96QI5 342 aa4.03□□□□□ -1.76
SMCHD1-211ENST00000584897 EPAS1Q99814 870 aa4.03□□□□□ -1.76
SMCHD1-211ENST00000584897 GPHNQ9NQX3 736 aaPredicted RBP4.03□□□□□ -1.76
SMCHD1-211ENST00000584897 FBXO22Q8NEZ5 403 aa4.02□□□□□ -1.77
SMCHD1-211ENST00000584897 FOXK1P85037 733 aa4.02□□□□□ -1.77
SMCHD1-211ENST00000584897 PLPP6Q8IY26 295 aa4.02□□□□□ -1.77
SMCHD1-211ENST00000584897 PCDHGA4Q9Y5G9 962 aa4.02□□□□□ -1.77
SMCHD1-211ENST00000584897 DPY19L2Q6NUT2 758 aa4.02□□□□□ -1.77
SMCHD1-211ENST00000584897 HCSTQ9UBK5 93 aa4.02□□□□□ -1.77
SMCHD1-211ENST00000584897 MFRPQ9BY79 579 aa4.02□□□□□ -1.77
SMCHD1-211ENST00000584897 MYT1LQ9UL68 1186 aa4.02□□□□□ -1.77
SMCHD1-211ENST00000584897 UNC13AQ9UPW8 1703 aa4.01□□□□□ -1.77
SMCHD1-211ENST00000584897 VARS2Q5ST30 1063 aaKnown RBP4.01□□□□□ -1.77
SMCHD1-211ENST00000584897 DDX27Q96GQ7 796 aaKnown RBP4.01□□□□□ -1.77
SMCHD1-211ENST00000584897 C2orf72A6NCS6 295 aa4.01□□□□□ -1.77
SMCHD1-211ENST00000584897 ARHGAP33O14559 1287 aa4.01□□□□□ -1.77
SMCHD1-211ENST00000584897 PTPREP23469 700 aa4□□□□□ -1.77
SMCHD1-211ENST00000584897 PPP1R15BQ5SWA1 713 aa4□□□□□ -1.77
SMCHD1-211ENST00000584897 PTCD2Q8WV60 388 aaKnown RBP4□□□□□ -1.77
SMCHD1-211ENST00000584897 SMYD5Q6GMV2 418 aa4□□□□□ -1.77
SMCHD1-211ENST00000584897 RNF166Q96A37 237 aaPredicted RBP4□□□□□ -1.77
SMCHD1-211ENST00000584897 ONECUT3O60422 494 aaPredicted RBP3.99□□□□□ -1.77
SMCHD1-211ENST00000584897 CERKQ8TCT0 537 aa3.99□□□□□ -1.77
SMCHD1-211ENST00000584897 ARSIQ5FYB1 569 aa3.99□□□□□ -1.77
SMCHD1-211ENST00000584897 ANKRD13DQ6ZTN6 518 aa3.99□□□□□ -1.77
SMCHD1-211ENST00000584897 RSPH4AQ5TD94 716 aa3.99□□□□□ -1.77
SMCHD1-211ENST00000584897 RNF25Q96BH1 459 aaPredicted RBP3.99□□□□□ -1.77
SMCHD1-211ENST00000584897 RGS20O76081 388 aa3.98□□□□□ -1.77
SMCHD1-211ENST00000584897 TYW1BQ6NUM6 668 aa3.98□□□□□ -1.77
SMCHD1-211ENST00000584897 MARVELD3Q96A59 401 aa3.98□□□□□ -1.77
SMCHD1-211ENST00000584897 NYAP1Q6ZVC0 841 aa3.98□□□□□ -1.77
SMCHD1-211ENST00000584897 P3H3Q8IVL6 736 aa3.98□□□□□ -1.77
SMCHD1-211ENST00000584897 LARP6Q9BRS8 491 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-211ENST00000584897 SLC4A5Q9BY07 1137 aa3.97□□□□□ -1.77
SMCHD1-211ENST00000584897 HOXB3P14651 431 aaPredicted RBP3.97□□□□□ -1.77
SMCHD1-211ENST00000584897 NACADO15069 1562 aa3.97□□□□□ -1.77
SMCHD1-211ENST00000584897 MS4A4AQ96JQ5 239 aa3.97□□□□□ -1.77
SMCHD1-211ENST00000584897 LCE2DQ5TA82 110 aaPredicted RBP3.96□□□□□ -1.78
SMCHD1-211ENST00000584897 PRR14Q9BWN1 585 aa3.96□□□□□ -1.78
SMCHD1-211ENST00000584897 LSM11P83369 360 aaKnown RBP eCLIP3.96□□□□□ -1.78
SMCHD1-211ENST00000584897 ZDHHC16Q969W1 377 aa3.96□□□□□ -1.78
SMCHD1-211ENST00000584897 LAPTM4BQ86VI4 370 aa3.96□□□□□ -1.78
SMCHD1-211ENST00000584897 PACS2Q86VP3 889 aa3.96□□□□□ -1.78
SMCHD1-211ENST00000584897 SPNS2Q8IVW8 549 aa3.96□□□□□ -1.78
SMCHD1-211ENST00000584897 ANKK1Q8NFD2 765 aa3.96□□□□□ -1.78
SMCHD1-211ENST00000584897 GPR153Q6NV75 609 aa3.95□□□□□ -1.78
SMCHD1-211ENST00000584897 ZNF454Q8N9F8 522 aa3.95□□□□□ -1.78
SMCHD1-211ENST00000584897 BICRAQ9NZM4 1560 aa3.95□□□□□ -1.78
SMCHD1-211ENST00000584897 MRPL50Q8N5N7 158 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-211ENST00000584897 JPH4Q96JJ6 628 aa3.95□□□□□ -1.78
SMCHD1-211ENST00000584897 NUDT7P0C024 238 aa3.94□□□□□ -1.78
SMCHD1-211ENST00000584897 MMRN1Q13201 1228 aa3.94□□□□□ -1.78
SMCHD1-211ENST00000584897 KIF3CO14782 793 aa3.94□□□□□ -1.78
SMCHD1-211ENST00000584897 PHF14O94880 888 aa3.94□□□□□ -1.78
SMCHD1-211ENST00000584897 LHX6Q9UPM6 363 aa3.93□□□□□ -1.78
SMCHD1-211ENST00000584897 EVI5O60447 810 aa3.93□□□□□ -1.78
SMCHD1-211ENST00000584897 GGCXP38435 758 aa3.93□□□□□ -1.78
SMCHD1-211ENST00000584897 OXER1Q8TDS5 423 aa3.93□□□□□ -1.78
SMCHD1-211ENST00000584897 CFAP44Q96MT7 982 aa3.93□□□□□ -1.78
SMCHD1-211ENST00000584897 MFSD10Q14728 455 aa3.93□□□□□ -1.78
SMCHD1-211ENST00000584897 CC2D2AQ9P2K1 1620 aa3.92□□□□□ -1.78
SMCHD1-211ENST00000584897 PLCB2Q00722 1185 aa3.92□□□□□ -1.78
SMCHD1-211ENST00000584897 CRISPLD2Q9H0B8 497 aa3.92□□□□□ -1.78
SMCHD1-211ENST00000584897 BCL2L12Q9HB09 334 aa3.92□□□□□ -1.78
SMCHD1-211ENST00000584897 KDM2AQ9Y2K7 1162 aa3.92□□□□□ -1.78
SMCHD1-211ENST00000584897 UPF1Q92900 1129 aaKnown RBP eCLIP3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms