RNA–Protein interactions for RNA: ENST00000568515.1

DENND4A-208, Transcript of DENN domain containing 4A, human

TSL 2

Gene DENND4A, Length 2,655 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DENND4A-208	ENST00000568515	MRS2	Q9HD23	443 aa		29.61	■■■□□ 2.33
DENND4A-208	ENST00000568515	ZBED9	Q6R2W3	1325 aa		29.6	■■■□□ 2.33
DENND4A-208	ENST00000568515	ANKRD30B	Q9BXX2	1392 aa		29.59	■■■□□ 2.33
DENND4A-208	ENST00000568515	CDK13	Q14004	1512 aa	Known RBP	29.58	■■■□□ 2.33
DENND4A-208	ENST00000568515	NBPF8	Q3BBV2	869 aa		29.58	■■■□□ 2.33
DENND4A-208	ENST00000568515	RPRD2	Q5VT52	1461 aa	Known RBP	29.58	■■■□□ 2.33
DENND4A-208	ENST00000568515	PDS5B	Q9NTI5	1447 aa		29.56	■■■□□ 2.32
DENND4A-208	ENST00000568515	IQGAP2	Q13576	1575 aa		29.54	■■■□□ 2.32
DENND4A-208	ENST00000568515	ROCK1	Q13464	1354 aa		29.53	■■■□□ 2.32
DENND4A-208	ENST00000568515	TARBP1	Q13395	1621 aa	Known RBP	29.53	■■■□□ 2.32
DENND4A-208	ENST00000568515	TEX14	Q8IWB6	1497 aa		29.53	■■■□□ 2.32
DENND4A-208	ENST00000568515	ERICH6	Q7L0X2	663 aa		29.53	■■■□□ 2.32
DENND4A-208	ENST00000568515	WDR62	O43379	1518 aa		29.52	■■■□□ 2.32
DENND4A-208	ENST00000568515	SPATA31E1	Q6ZUB1	1445 aa		29.52	■■■□□ 2.32
DENND4A-208	ENST00000568515	KIF7	Q2M1P5	1343 aa		29.51	■■■□□ 2.32
DENND4A-208	ENST00000568515	DAPK1	P53355	1430 aa		29.5	■■■□□ 2.31
DENND4A-208	ENST00000568515	ARID3C	A6NKF2	412 aa		29.48	■■■□□ 2.31
DENND4A-208	ENST00000568515	B4GALNT3	Q6L9W6	998 aa		29.48	■■■□□ 2.31
DENND4A-208	ENST00000568515	POLR1A	O95602	1720 aa	Predicted RBP	29.47	■■■□□ 2.31
DENND4A-208	ENST00000568515	ABCC5	O15440	1437 aa		29.45	■■■□□ 2.3
DENND4A-208	ENST00000568515	PBRM1	Q86U86	1689 aa		29.44	■■■□□ 2.3
DENND4A-208	ENST00000568515	SLC4A1AP	Q9BWU0	796 aa	Known RBP	29.44	■■■□□ 2.3
DENND4A-208	ENST00000568515	DNMT1	P26358	1616 aa	Known RBP	29.42	■■■□□ 2.3
DENND4A-208	ENST00000568515	ADAMTS12	P58397	1594 aa		29.38	■■■□□ 2.29
DENND4A-208	ENST00000568515	ZNF644	Q9H582	1327 aa	Predicted RBP	29.37	■■■□□ 2.29
DENND4A-208	ENST00000568515	SMG6	Q86US8	1419 aa	Known RBP	29.34	■■■□□ 2.29
DENND4A-208	ENST00000568515	DHX29	Q7Z478	1369 aa	Known RBP	29.32	■■■□□ 2.28
DENND4A-208	ENST00000568515	PZP	P20742	1482 aa		29.29	■■■□□ 2.28
DENND4A-208	ENST00000568515	MBD5	Q9P267	1494 aa		29.26	■■■□□ 2.27
DENND4A-208	ENST00000568515	NUP153	P49790	1475 aa	Known RBP	29.25	■■■□□ 2.27
DENND4A-208	ENST00000568515	NUDC	Q9Y266	331 aa		29.25	■■■□□ 2.27
DENND4A-208	ENST00000568515	MYT1L	Q9UL68	1186 aa		29.24	■■■□□ 2.27
DENND4A-208	ENST00000568515	USP47	Q96K76	1375 aa		29.23	■■■□□ 2.27
DENND4A-208	ENST00000568515	RNF123	Q5XPI4	1314 aa		29.23	■■■□□ 2.27
DENND4A-208	ENST00000568515	DNAJC5B	Q9UF47	199 aa		29.22	■■■□□ 2.27
DENND4A-208	ENST00000568515	BCORL1	Q5H9F3	1711 aa		29.22	■■■□□ 2.27
DENND4A-208	ENST00000568515	KIAA0556	O60303	1618 aa		29.21	■■■□□ 2.27
DENND4A-208	ENST00000568515	DISP1	Q96F81	1524 aa		29.21	■■■□□ 2.27
DENND4A-208	ENST00000568515	KIAA1107	Q9UPP5	1409 aa		29.2	■■■□□ 2.26
DENND4A-208	ENST00000568515	CNGB1	Q14028	1251 aa	Predicted RBP	29.19	■■■□□ 2.26
DENND4A-208	ENST00000568515	POLR3GL	Q9BT43	218 aa		29.19	■■■□□ 2.26
DENND4A-208	ENST00000568515	ARID4B	Q4LE39	1312 aa	Predicted RBP	29.19	■■■□□ 2.26
DENND4A-208	ENST00000568515	RAPGEF6	Q8TEU7	1601 aa		29.18	■■■□□ 2.26
DENND4A-208	ENST00000568515	KIAA0586	Q9BVV6	1533 aa		29.17	■■■□□ 2.26
DENND4A-208	ENST00000568515	CAMSAP2	Q08AD1	1489 aa		29.16	■■■□□ 2.26
DENND4A-208	ENST00000568515	ZNF326	Q5BKZ1	582 aa	Known RBP	29.16	■■■□□ 2.26
DENND4A-208	ENST00000568515	CFDP1	Q9UEE9	299 aa	Predicted RBP	29.14	■■■□□ 2.26
DENND4A-208	ENST00000568515	NOP58	Q9Y2X3	529 aa	Known RBP	29.14	■■■□□ 2.26
DENND4A-208	ENST00000568515	KIF14	Q15058	1648 aa		29.14	■■■□□ 2.26
DENND4A-208	ENST00000568515	ADGB	Q8N7X0	1667 aa		29.13	■■■□□ 2.25
DENND4A-208	ENST00000568515	CCDC136	Q96JN2	1154 aa		29.13	■■■□□ 2.25
DENND4A-208	ENST00000568515	KDM5C	P41229	1560 aa		29.13	■■■□□ 2.25
DENND4A-208	ENST00000568515	PKD2	Q13563	968 aa		29.12	■■■□□ 2.25
DENND4A-208	ENST00000568515	PNISR	Q8TF01	805 aa	Known RBP	29.12	■■■□□ 2.25
DENND4A-208	ENST00000568515	TRO	Q12816	1431 aa	Predicted RBP	29.11	■■■□□ 2.25
DENND4A-208	ENST00000568515	PRG4	Q92954	1404 aa	Predicted RBP	29.11	■■■□□ 2.25
DENND4A-208	ENST00000568515	ADGRL2	O95490	1459 aa		29.1	■■■□□ 2.25
DENND4A-208	ENST00000568515	ROCK2	O75116	1388 aa	Known RBP	29.09	■■■□□ 2.25
DENND4A-208	ENST00000568515	ITSN2	Q9NZM3	1697 aa		29.07	■■■□□ 2.24
DENND4A-208	ENST00000568515	TMC1	Q8TDI8	760 aa		29.07	■■■□□ 2.24
DENND4A-208	ENST00000568515	GPATCH8	Q9UKJ3	1502 aa	Known RBP	29.07	■■■□□ 2.24
DENND4A-208	ENST00000568515	MRC2	Q9UBG0	1479 aa		29.06	■■■□□ 2.24
DENND4A-208	ENST00000568515	UHRF1BP1	Q6BDS2	1440 aa		29.05	■■■□□ 2.24
DENND4A-208	ENST00000568515	ANKRD30A	Q9BXX3	1397 aa		29.04	■■■□□ 2.24
DENND4A-208	ENST00000568515	ZNF777	Q9ULD5	760 aa	Predicted RBP	29.04	■■■□□ 2.24
DENND4A-208	ENST00000568515	PAK3	O75914	559 aa	Predicted RBP	29.04	■■■□□ 2.24
DENND4A-208	ENST00000568515	ZNF608	Q9ULD9	1512 aa	Predicted RBP	29.03	■■■□□ 2.24
DENND4A-208	ENST00000568515	DEK	P35659	375 aa	Known RBP	29.03	■■■□□ 2.24
DENND4A-208	ENST00000568515	RALGAPB	Q86X10	1494 aa		29.03	■■■□□ 2.24
DENND4A-208	ENST00000568515	CROCC2	H7BZ55	1655 aa		29.03	■■■□□ 2.24
DENND4A-208	ENST00000568515	SENP3-EIF4A1	A0A087X0R7	540 aa		29	■■■□□ 2.23
DENND4A-208	ENST00000568515	KIF15	Q9NS87	1388 aa		29	■■■□□ 2.23
DENND4A-208	ENST00000568515	ANKRD50	Q9ULJ7	1429 aa		28.99	■■■□□ 2.23
DENND4A-208	ENST00000568515	CARD11	Q9BXL7	1154 aa		28.99	■■■□□ 2.23
DENND4A-208	ENST00000568515	IFT140	Q96RY7	1462 aa		28.98	■■■□□ 2.23
DENND4A-208	ENST00000568515	ANP32A	P39687	249 aa	Known RBP	28.97	■■■□□ 2.23
DENND4A-208	ENST00000568515	LRPPRC	P42704	1394 aa	Known RBP	28.97	■■■□□ 2.23
DENND4A-208	ENST00000568515	ADCY10	Q96PN6	1610 aa		28.96	■■■□□ 2.23
DENND4A-208	ENST00000568515	GRIN2A	Q12879	1464 aa		28.96	■■■□□ 2.23
DENND4A-208	ENST00000568515	IPO9	Q96P70	1041 aa	Known RBP	28.96	■■■□□ 2.23
DENND4A-208	ENST00000568515	BRD4	O60885	1362 aa	Predicted RBP	28.94	■■■□□ 2.22
DENND4A-208	ENST00000568515	ARHGEF12	Q9NZN5	1544 aa		28.94	■■■□□ 2.22
DENND4A-208	ENST00000568515	NBR1	Q14596	966 aa		28.93	■■■□□ 2.22
DENND4A-208	ENST00000568515	PLB1	Q6P1J6	1458 aa		28.93	■■■□□ 2.22
DENND4A-208	ENST00000568515	NUP155	O75694	1391 aa		28.92	■■■□□ 2.22
DENND4A-208	ENST00000568515	KTN1	Q86UP2	1357 aa	Known RBP	28.92	■■■□□ 2.22
DENND4A-208	ENST00000568515	MYBBP1A	Q9BQG0	1328 aa	Known RBP	28.92	■■■□□ 2.22
DENND4A-208	ENST00000568515	RALBP1	Q15311	655 aa		28.91	■■■□□ 2.22
DENND4A-208	ENST00000568515	ST20-MTHFS	A0A0A6YYL1	179 aa		28.9	■■■□□ 2.22
DENND4A-208	ENST00000568515	KDM2A	Q9Y2K7	1162 aa		28.87	■■■□□ 2.21
DENND4A-208	ENST00000568515	ZBTB47	Q9UFB7	747 aa	Predicted RBP	28.86	■■■□□ 2.21
DENND4A-208	ENST00000568515	RRP1	P56182	461 aa	Known RBP	28.85	■■■□□ 2.21
DENND4A-208	ENST00000568515	C9orf84	Q5VXU9	1444 aa		28.83	■■■□□ 2.21
DENND4A-208	ENST00000568515	SHANK2	Q9UPX8	1470 aa		28.83	■■■□□ 2.21
DENND4A-208	ENST00000568515	KDM5D	Q9BY66	1539 aa		28.82	■■■□□ 2.2
DENND4A-208	ENST00000568515	DCAF11	Q8TEB1	546 aa		28.82	■■■□□ 2.2
DENND4A-208	ENST00000568515		E9PCH4	1651 aa		28.81	■■■□□ 2.2
DENND4A-208	ENST00000568515	CDC42BPA	Q5VT25	1732 aa		28.8	■■■□□ 2.2
DENND4A-208	ENST00000568515	CEP170	Q5SW79	1584 aa		28.8	■■■□□ 2.2
DENND4A-208	ENST00000568515	RCAN3	Q9UKA8	241 aa		28.79	■■■□□ 2.2

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms