RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 ARHGAP35Q9NRY4 1499 aa29.23■■■□□ 2.27
CLK3-221ENST00000568139 MYO5CQ9NQX4 1742 aa29.21■■■□□ 2.27
CLK3-221ENST00000568139 ATP1B4Q9UN42 357 aaPredicted RBP29.21■■■□□ 2.27
CLK3-221ENST00000568139 EFCAB2Q5VUJ9 269 aa29.2■■■□□ 2.26
CLK3-221ENST00000568139 EHMT2Q96KQ7 1210 aa29.2■■■□□ 2.26
CLK3-221ENST00000568139 CDK11AQ9UQ88 783 aaPredicted RBP29.19■■■□□ 2.26
CLK3-221ENST00000568139 FER1L4A9Z1Z3 1794 aa29.17■■■□□ 2.26
CLK3-221ENST00000568139 ATP10AO60312 1499 aa29.17■■■□□ 2.26
CLK3-221ENST00000568139 MLECQ14165 292 aa29.16■■■□□ 2.26
CLK3-221ENST00000568139 HSPA2P54652 639 aa29.15■■■□□ 2.26
CLK3-221ENST00000568139 PLPPR3Q6T4P5 718 aa29.15■■■□□ 2.26
CLK3-221ENST00000568139 KIF14Q15058 1648 aa29.14■■■□□ 2.26
CLK3-221ENST00000568139 TROQ12816 1431 aaPredicted RBP29.12■■■□□ 2.25
CLK3-221ENST00000568139 C9orf84Q5VXU9 1444 aa29.12■■■□□ 2.25
CLK3-221ENST00000568139 ARHGEF12Q9NZN5 1544 aa29.11■■■□□ 2.25
CLK3-221ENST00000568139 CHIC1Q5VXU3 224 aa29.1■■■□□ 2.25
CLK3-221ENST00000568139 LRRIQ1Q96JM4 1722 aa29.08■■■□□ 2.25
CLK3-221ENST00000568139 ZNF518AQ6AHZ1 1483 aa29.08■■■□□ 2.25
CLK3-221ENST00000568139 CLIP1P30622 1438 aa29.06■■■□□ 2.24
CLK3-221ENST00000568139 KDM5CP41229 1560 aa29.05■■■□□ 2.24
CLK3-221ENST00000568139 ARHGAP5Q13017 1502 aa29.05■■■□□ 2.24
CLK3-221ENST00000568139 AFAP1Q8N556 730 aa29.03■■■□□ 2.24
CLK3-221ENST00000568139 CDC42BPBQ9Y5S2 1711 aa29■■■□□ 2.23
CLK3-221ENST00000568139 PREX1Q8TCU6 1659 aa28.98■■■□□ 2.23
CLK3-221ENST00000568139 CEBPAP49715 358 aaPredicted RBP28.96■■■□□ 2.23
CLK3-221ENST00000568139 DIP2CQ9Y2E4 1556 aa28.96■■■□□ 2.23
CLK3-221ENST00000568139 REREQ9P2R6 1566 aa28.95■■■□□ 2.22
CLK3-221ENST00000568139 SETD1BQ9UPS6 1966 aaKnown RBP28.94■■■□□ 2.22
CLK3-221ENST00000568139 MLH3Q9UHC1 1453 aa28.94■■■□□ 2.22
CLK3-221ENST00000568139 CASKIN1Q8WXD9 1431 aa28.94■■■□□ 2.22
CLK3-221ENST00000568139 PREX2Q70Z35 1606 aa28.93■■■□□ 2.22
CLK3-221ENST00000568139 CCDC18Q5T9S5 1454 aa28.92■■■□□ 2.22
CLK3-221ENST00000568139 CERKQ8TCT0 537 aa28.92■■■□□ 2.22
CLK3-221ENST00000568139 MYT1LQ9UL68 1186 aa28.92■■■□□ 2.22
CLK3-221ENST00000568139 ABCA6Q8N139 1617 aa28.9■■■□□ 2.22
CLK3-221ENST00000568139 ABCC1P33527 1531 aa28.89■■■□□ 2.21
CLK3-221ENST00000568139 TRAPPC8Q9Y2L5 1435 aa28.88■■■□□ 2.21
CLK3-221ENST00000568139 ITSN2Q9NZM3 1697 aa28.86■■■□□ 2.21
CLK3-221ENST00000568139 AGLP35573 1532 aa28.86■■■□□ 2.21
CLK3-221ENST00000568139 STRCQ7RTU9 1775 aa28.85■■■□□ 2.21
CLK3-221ENST00000568139 CDC42BPAQ5VT25 1732 aa28.84■■■□□ 2.21
CLK3-221ENST00000568139 UHRF1BP1Q6BDS2 1440 aa28.84■■■□□ 2.21
CLK3-221ENST00000568139 KIDINS220Q9ULH0 1771 aa28.81■■■□□ 2.2
CLK3-221ENST00000568139 C3P01024 1663 aa28.81■■■□□ 2.2
CLK3-221ENST00000568139 DMRT2Q9Y5R5 561 aa28.81■■■□□ 2.2
CLK3-221ENST00000568139 FYCO1Q9BQS8 1478 aa28.78■■■□□ 2.2
CLK3-221ENST00000568139 ESF1Q9H501 851 aaKnown RBP28.75■■■□□ 2.19
CLK3-221ENST00000568139 SAMD9LQ8IVG5 1584 aa28.72■■■□□ 2.19
CLK3-221ENST00000568139 CNTLNQ9NXG0 1405 aa28.7■■■□□ 2.19
CLK3-221ENST00000568139 GPATCH8Q9UKJ3 1502 aaKnown RBP28.7■■■□□ 2.19
CLK3-221ENST00000568139 ZNF777Q9ULD5 760 aaPredicted RBP28.69■■■□□ 2.18
CLK3-221ENST00000568139 PTPRTO14522 1441 aa28.69■■■□□ 2.18
CLK3-221ENST00000568139 SYCP2Q9BX26 1530 aa28.67■■■□□ 2.18
CLK3-221ENST00000568139 HNRNPMP52272 730 aaKnown RBP eCLIP28.64■■■□□ 2.184e-10■■■■■ 38
CLK3-221ENST00000568139 SPAG9O60271 1321 aaKnown RBP28.64■■■□□ 2.17
CLK3-221ENST00000568139 MROH2AA6NES4 1674 aa28.63■■■□□ 2.17
CLK3-221ENST00000568139 KIAA1107Q9UPP5 1409 aa28.62■■■□□ 2.17
CLK3-221ENST00000568139 SUPT6HQ7KZ85 1726 aaKnown RBP28.6■■■□□ 2.17
CLK3-221ENST00000568139 NPATQ14207 1427 aa28.6■■■□□ 2.17
CLK3-221ENST00000568139 PLEKHH2Q8IVE3 1493 aa28.59■■■□□ 2.17
CLK3-221ENST00000568139 CFDP1Q9UEE9 299 aaPredicted RBP28.59■■■□□ 2.17
CLK3-221ENST00000568139 ZMYM3Q14202 1370 aa28.59■■■□□ 2.17
CLK3-221ENST00000568139 ATP7AQ04656 1500 aa28.59■■■□□ 2.17
CLK3-221ENST00000568139 NCOA1Q15788 1441 aa28.58■■■□□ 2.17
CLK3-221ENST00000568139 CCNB3Q8WWL7 1395 aa28.56■■■□□ 2.16
CLK3-221ENST00000568139 INO80Q9ULG1 1556 aaPredicted RBP28.56■■■□□ 2.16
CLK3-221ENST00000568139 PLXNC1O60486 1568 aa28.55■■■□□ 2.16
CLK3-221ENST00000568139 LTBP4Q8N2S1 1624 aa28.54■■■□□ 2.16
CLK3-221ENST00000568139 A2MP01023 1474 aa28.53■■■□□ 2.16
CLK3-221ENST00000568139 MTUS2Q5JR59 1369 aa28.51■■■□□ 2.16
CLK3-221ENST00000568139 CAMSAP1Q5T5Y3 1602 aa28.51■■■□□ 2.15
CLK3-221ENST00000568139 CLTCQ00610 1675 aaKnown RBP28.5■■■□□ 2.15
CLK3-221ENST00000568139 IQSEC2Q5JU85 1478 aa28.46■■■□□ 2.15
CLK3-221ENST00000568139 ADGBQ8N7X0 1667 aa28.45■■■□□ 2.15
CLK3-221ENST00000568139 TIAM1Q13009 1591 aa28.45■■■□□ 2.14
CLK3-221ENST00000568139 GGT6Q6P531 493 aa28.44■■■□□ 2.14
CLK3-221ENST00000568139 PPP6R1Q9UPN7 881 aa28.44■■■□□ 2.14
CLK3-221ENST00000568139 ZNF142P52746 1687 aaPredicted RBP28.44■■■□□ 2.14
CLK3-221ENST00000568139 PTPRKQ15262 1439 aa28.43■■■□□ 2.14
CLK3-221ENST00000568139 ZNF644Q9H582 1327 aaPredicted RBP28.43■■■□□ 2.14
CLK3-221ENST00000568139 MBD5Q9P267 1494 aa28.42■■■□□ 2.14
CLK3-221ENST00000568139 MYO3AQ8NEV4 1616 aa28.42■■■□□ 2.14
CLK3-221ENST00000568139 EHBP1L1Q8N3D4 1523 aa28.41■■■□□ 2.14
CLK3-221ENST00000568139 NCKAP5LQ9HCH0 1330 aa28.41■■■□□ 2.14
CLK3-221ENST00000568139 RTEL1-TNFRSF6BF6WH68 1400 aa28.39■■■□□ 2.14
CLK3-221ENST00000568139 PLA2R1Q13018 1463 aa28.39■■■□□ 2.13
CLK3-221ENST00000568139 DISP3Q9P2K9 1392 aa28.38■■■□□ 2.13
CLK3-221ENST00000568139 CEP162Q5TB80 1403 aa28.38■■■□□ 2.13
CLK3-221ENST00000568139 PKD2Q13563 968 aa28.38■■■□□ 2.13
CLK3-221ENST00000568139 CEP170BQ9Y4F5 1589 aaPredicted RBP28.37■■■□□ 2.13
CLK3-221ENST00000568139 TCOF1Q13428 1488 aaKnown RBP28.34■■■□□ 2.13
CLK3-221ENST00000568139 DHX29Q7Z478 1369 aaKnown RBP28.34■■■□□ 2.13
CLK3-221ENST00000568139 ILDR2Q71H61 639 aa28.32■■■□□ 2.12
CLK3-221ENST00000568139 ZNF335Q9H4Z2 1342 aaPredicted RBP28.32■■■□□ 2.12
CLK3-221ENST00000568139 A2ML1A8K2U0 1454 aa28.27■■■□□ 2.12
CLK3-221ENST00000568139 DNMT1P26358 1616 aaKnown RBP28.25■■■□□ 2.11
CLK3-221ENST00000568139 RSPH4AQ5TD94 716 aa28.25■■■□□ 2.11
CLK3-221ENST00000568139 CCDC141Q6ZP82 1450 aa28.25■■■□□ 2.11
CLK3-221ENST00000568139 NCOA2Q15596 1464 aa28.24■■■□□ 2.11
CLK3-221ENST00000568139 SPATA31D1Q6ZQQ2 1576 aa28.24■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms