RNA–Protein interactions for RNA: ENST00000566230.5

COMMD4-214, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-214ENST00000566230 MLECQ14165 292 aa22.36■■□□□ 1.17
COMMD4-214ENST00000566230 FER1L4A9Z1Z3 1794 aa22.35■■□□□ 1.17
COMMD4-214ENST00000566230 MYO5CQ9NQX4 1742 aa22.31■■□□□ 1.16
COMMD4-214ENST00000566230 ATP10AO60312 1499 aa22.3■■□□□ 1.16
COMMD4-214ENST00000566230 EFCAB2Q5VUJ9 269 aa22.29■■□□□ 1.16
COMMD4-214ENST00000566230 ATP1B4Q9UN42 357 aaPredicted RBP22.29■■□□□ 1.16
COMMD4-214ENST00000566230 ARHGEF12Q9NZN5 1544 aa22.29■■□□□ 1.16
COMMD4-214ENST00000566230 EHMT2Q96KQ7 1210 aa22.28■■□□□ 1.16
COMMD4-214ENST00000566230 ARHGAP35Q9NRY4 1499 aa22.28■■□□□ 1.16
COMMD4-214ENST00000566230 KIF14Q15058 1648 aa22.28■■□□□ 1.16
COMMD4-214ENST00000566230 FMN1Q68DA7 1419 aa22.27■■□□□ 1.16
COMMD4-214ENST00000566230 C9orf84Q5VXU9 1444 aa22.26■■□□□ 1.15
COMMD4-214ENST00000566230 UBTFP17480 764 aaKnown RBP22.26■■□□□ 1.15
COMMD4-214ENST00000566230 CERKQ8TCT0 537 aa22.23■■□□□ 1.15
COMMD4-214ENST00000566230 CDK11AQ9UQ88 783 aaPredicted RBP22.23■■□□□ 1.15
COMMD4-214ENST00000566230 LRRIQ1Q96JM4 1722 aa22.23■■□□□ 1.15
COMMD4-214ENST00000566230 CEBPAP49715 358 aaPredicted RBP22.22■■□□□ 1.15
COMMD4-214ENST00000566230 PREX1Q8TCU6 1659 aa22.21■■□□□ 1.15
COMMD4-214ENST00000566230 AFAP1Q8N556 730 aa22.21■■□□□ 1.15
COMMD4-214ENST00000566230 TROQ12816 1431 aaPredicted RBP22.21■■□□□ 1.15
COMMD4-214ENST00000566230 ZNF518AQ6AHZ1 1483 aa22.2■■□□□ 1.14
COMMD4-214ENST00000566230 KDM5CP41229 1560 aa22.2■■□□□ 1.14
COMMD4-214ENST00000566230 ARHGAP5Q13017 1502 aa22.19■■□□□ 1.14
COMMD4-214ENST00000566230 CDC42BPBQ9Y5S2 1711 aa22.17■■□□□ 1.14
COMMD4-214ENST00000566230 SETD1BQ9UPS6 1966 aaKnown RBP22.17■■□□□ 1.14
COMMD4-214ENST00000566230 STRCQ7RTU9 1775 aa22.16■■□□□ 1.14
COMMD4-214ENST00000566230 DIP2CQ9Y2E4 1556 aa22.15■■□□□ 1.14
COMMD4-214ENST00000566230 CLIP1P30622 1438 aa22.13■■□□□ 1.13
COMMD4-214ENST00000566230 ABCA6Q8N139 1617 aa22.12■■□□□ 1.13
COMMD4-214ENST00000566230 REREQ9P2R6 1566 aa22.12■■□□□ 1.13
COMMD4-214ENST00000566230 MLH3Q9UHC1 1453 aa22.1■■□□□ 1.13
COMMD4-214ENST00000566230 MYT1LQ9UL68 1186 aa22.1■■□□□ 1.13
COMMD4-214ENST00000566230 C3P01024 1663 aa22.08■■□□□ 1.13
COMMD4-214ENST00000566230 UHRF1BP1Q6BDS2 1440 aa22.08■■□□□ 1.13
COMMD4-214ENST00000566230 TRAPPC8Q9Y2L5 1435 aa22.08■■□□□ 1.13
COMMD4-214ENST00000566230 CHIC1Q5VXU3 224 aa22.08■■□□□ 1.13
COMMD4-214ENST00000566230 PREX2Q70Z35 1606 aa22.08■■□□□ 1.13
COMMD4-214ENST00000566230 DMRT2Q9Y5R5 561 aa22.06■■□□□ 1.12
COMMD4-214ENST00000566230 ITSN2Q9NZM3 1697 aa22.06■■□□□ 1.12
COMMD4-214ENST00000566230 ABCC1P33527 1531 aa22.06■■□□□ 1.12
COMMD4-214ENST00000566230 AGLP35573 1532 aa22.06■■□□□ 1.12
COMMD4-214ENST00000566230 KIDINS220Q9ULH0 1771 aa22.03■■□□□ 1.12
COMMD4-214ENST00000566230 CASKIN1Q8WXD9 1431 aa22.03■■□□□ 1.12
COMMD4-214ENST00000566230 CDC42BPAQ5VT25 1732 aa22.03■■□□□ 1.12
COMMD4-214ENST00000566230 CCDC18Q5T9S5 1454 aa22.01■■□□□ 1.11
COMMD4-214ENST00000566230 PTPRTO14522 1441 aa21.98■■□□□ 1.11
COMMD4-214ENST00000566230 ESF1Q9H501 851 aaKnown RBP21.96■■□□□ 1.11
COMMD4-214ENST00000566230 SAMD9LQ8IVG5 1584 aa21.95■■□□□ 1.1
COMMD4-214ENST00000566230 LTBP4Q8N2S1 1624 aa21.92■■□□□ 1.1
COMMD4-214ENST00000566230 CNTLNQ9NXG0 1405 aa21.92■■□□□ 1.1
COMMD4-214ENST00000566230 ZNF777Q9ULD5 760 aaPredicted RBP21.91■■□□□ 1.1
COMMD4-214ENST00000566230 FYCO1Q9BQS8 1478 aa21.9■■□□□ 1.1
COMMD4-214ENST00000566230 NCOA1Q15788 1441 aa21.9■■□□□ 1.1
COMMD4-214ENST00000566230 MROH2AA6NES4 1674 aa21.9■■□□□ 1.1
COMMD4-214ENST00000566230 GPATCH8Q9UKJ3 1502 aaKnown RBP21.9■■□□□ 1.1
COMMD4-214ENST00000566230 ILDR2Q71H61 639 aa21.89■■□□□ 1.09
COMMD4-214ENST00000566230 SYCP2Q9BX26 1530 aa21.89■■□□□ 1.09
COMMD4-214ENST00000566230 SUPT6HQ7KZ85 1726 aaKnown RBP21.89■■□□□ 1.09
COMMD4-214ENST00000566230 DISP3Q9P2K9 1392 aa21.88■■□□□ 1.09
COMMD4-214ENST00000566230 HNRNPMP52272 730 aaKnown RBP eCLIP21.88■■□□□ 1.09
COMMD4-214ENST00000566230 NPATQ14207 1427 aa21.87■■□□□ 1.09
COMMD4-214ENST00000566230 ZMYM3Q14202 1370 aa21.87■■□□□ 1.09
COMMD4-214ENST00000566230 SPAG9O60271 1321 aaKnown RBP21.86■■□□□ 1.09
COMMD4-214ENST00000566230 CAMSAP1Q5T5Y3 1602 aa21.85■■□□□ 1.09
COMMD4-214ENST00000566230 ATP7AQ04656 1500 aa21.83■■□□□ 1.09
COMMD4-214ENST00000566230 CLTCQ00610 1675 aaKnown RBP21.82■■□□□ 1.08
COMMD4-214ENST00000566230 KIAA1107Q9UPP5 1409 aa21.82■■□□□ 1.08
COMMD4-214ENST00000566230 INO80Q9ULG1 1556 aaPredicted RBP21.82■■□□□ 1.08
COMMD4-214ENST00000566230 IQSEC2Q5JU85 1478 aa21.81■■□□□ 1.08
COMMD4-214ENST00000566230 PLXNC1O60486 1568 aa21.81■■□□□ 1.08
COMMD4-214ENST00000566230 NCKAP5LQ9HCH0 1330 aa21.8■■□□□ 1.08
COMMD4-214ENST00000566230 CFDP1Q9UEE9 299 aaPredicted RBP21.79■■□□□ 1.08
COMMD4-214ENST00000566230 A2MP01023 1474 aa21.78■■□□□ 1.08
COMMD4-214ENST00000566230 PLEKHH2Q8IVE3 1493 aa21.78■■□□□ 1.08
COMMD4-214ENST00000566230 MYO3AQ8NEV4 1616 aa21.77■■□□□ 1.07
COMMD4-214ENST00000566230 CCNB3Q8WWL7 1395 aa21.76■■□□□ 1.07
COMMD4-214ENST00000566230 ZNF142P52746 1687 aaPredicted RBP21.76■■□□□ 1.07
COMMD4-214ENST00000566230 SOCS7O14512 581 aa21.76■■□□□ 1.07
COMMD4-214ENST00000566230 PTPRKQ15262 1439 aa21.76■■□□□ 1.07
COMMD4-214ENST00000566230 SPATA31D1Q6ZQQ2 1576 aa21.75■■□□□ 1.07
COMMD4-214ENST00000566230 GGT6Q6P531 493 aa21.74■■□□□ 1.07
COMMD4-214ENST00000566230 ZNF335Q9H4Z2 1342 aaPredicted RBP21.74■■□□□ 1.07
COMMD4-214ENST00000566230 ZNF644Q9H582 1327 aaPredicted RBP21.73■■□□□ 1.07
COMMD4-214ENST00000566230 ADGBQ8N7X0 1667 aa21.72■■□□□ 1.07
COMMD4-214ENST00000566230 CEP170BQ9Y4F5 1589 aaPredicted RBP21.72■■□□□ 1.07
COMMD4-214ENST00000566230 PLA2R1Q13018 1463 aa21.71■■□□□ 1.07
COMMD4-214ENST00000566230 MTUS2Q5JR59 1369 aa21.71■■□□□ 1.07
COMMD4-214ENST00000566230 TCOF1Q13428 1488 aaKnown RBP21.71■■□□□ 1.07
COMMD4-214ENST00000566230 PKD2Q13563 968 aa21.7■■□□□ 1.06
COMMD4-214ENST00000566230 PPP6R1Q9UPN7 881 aa21.69■■□□□ 1.06
COMMD4-214ENST00000566230 MBD5Q9P267 1494 aa21.69■■□□□ 1.06
COMMD4-214ENST00000566230 TIAM1Q13009 1591 aa21.69■■□□□ 1.06
COMMD4-214ENST00000566230 UBAP1LF5GYI3 381 aa21.65■■□□□ 1.06
COMMD4-214ENST00000566230 DNMT1P26358 1616 aaKnown RBP21.63■■□□□ 1.05
COMMD4-214ENST00000566230 A2ML1A8K2U0 1454 aa21.63■■□□□ 1.05
COMMD4-214ENST00000566230 RTEL1-TNFRSF6BF6WH68 1400 aa21.63■■□□□ 1.05
COMMD4-214ENST00000566230 DHX29Q7Z478 1369 aaKnown RBP21.62■■□□□ 1.05
COMMD4-214ENST00000566230 EHBP1L1Q8N3D4 1523 aa21.61■■□□□ 1.05
COMMD4-214ENST00000566230 CEP162Q5TB80 1403 aa21.6■■□□□ 1.05
COMMD4-214ENST00000566230 FBXO31Q5XUX0 539 aaPredicted RBP21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 142.9 ms