RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 POTEFA5A3E0 1075 aa8.84□□□□□ -0.99
VPS35P1-201ENST00000563400 G3V3G9 751 aa8.84□□□□□ -0.99
VPS35P1-201ENST00000563400 EFCAB3Q8N7B9 438 aa8.84□□□□□ -0.99
VPS35P1-201ENST00000563400 L3MBTL3Q96JM7 780 aaPredicted RBP8.84□□□□□ -0.99
VPS35P1-201ENST00000563400 POTEB2H3BUK9 544 aa8.83□□□□□ -1
VPS35P1-201ENST00000563400 NLRP6P59044 892 aa8.79□□□□□ -1
VPS35P1-201ENST00000563400 ILDR1Q86SU0 546 aaPredicted RBP8.79□□□□□ -1
VPS35P1-201ENST00000563400 PDCD7Q8N8D1 485 aaKnown RBP8.79□□□□□ -1
VPS35P1-201ENST00000563400 HS6ST3Q8IZP7 471 aa8.78□□□□□ -1
VPS35P1-201ENST00000563400 OTUD5Q96G74 571 aa8.77□□□□□ -1.01
VPS35P1-201ENST00000563400 C3orf67Q6ZVT6 689 aa8.76□□□□□ -1.01
VPS35P1-201ENST00000563400 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.75□□□□□ -1.01
VPS35P1-201ENST00000563400 POTEJP0CG39 1038 aa8.75□□□□□ -1.01
VPS35P1-201ENST00000563400 PHF8Q9UPP1 1060 aa8.74□□□□□ -1.01
VPS35P1-201ENST00000563400 BOLA1Q9Y3E2 137 aa8.74□□□□□ -1.01
VPS35P1-201ENST00000563400 RYDENQ9NUL5 291 aaKnown RBP8.73□□□□□ -1.01
VPS35P1-201ENST00000563400 NEUROD2Q15784 382 aa8.72□□□□□ -1.01
VPS35P1-201ENST00000563400 LMOD2Q6P5Q4 547 aa8.72□□□□□ -1.01
VPS35P1-201ENST00000563400 ARID3AQ99856 593 aa8.72□□□□□ -1.01
VPS35P1-201ENST00000563400 DPY19L2Q6NUT2 758 aa8.7□□□□□ -1.02
VPS35P1-201ENST00000563400 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.7□□□□□ -1.02
VPS35P1-201ENST00000563400 SLAIN1Q8ND83 568 aa8.7□□□□□ -1.02
VPS35P1-201ENST00000563400 MFRPQ9BY79 579 aa8.7□□□□□ -1.02
VPS35P1-201ENST00000563400 NKX1-1Q15270 411 aaPredicted RBP8.69□□□□□ -1.02
VPS35P1-201ENST00000563400 ZMYND15Q9H091 742 aa8.69□□□□□ -1.02
VPS35P1-201ENST00000563400 CCDC180Q9P1Z9 1646 aa8.69□□□□□ -1.02
VPS35P1-201ENST00000563400 FBXO22Q8NEZ5 403 aa8.68□□□□□ -1.02
VPS35P1-201ENST00000563400 LOC105371045A0A1W2PR82 267 aa8.66□□□□□ -1.02
VPS35P1-201ENST00000563400 MS4A4AQ96JQ5 239 aa8.66□□□□□ -1.02
VPS35P1-201ENST00000563400 GTPBP6O43824 516 aaPredicted RBP8.65□□□□□ -1.02
VPS35P1-201ENST00000563400 MICALL2Q8IY33 904 aa8.64□□□□□ -1.03
VPS35P1-201ENST00000563400 TMEM121BQ9BXQ6 578 aaPredicted RBP8.64□□□□□ -1.03
VPS35P1-201ENST00000563400 SNPHO15079 494 aa8.64□□□□□ -1.03
VPS35P1-201ENST00000563400 RSPH6AQ9H0K4 717 aa8.64□□□□□ -1.03
VPS35P1-201ENST00000563400 C1orf115Q9H7X2 142 aa8.63□□□□□ -1.03
VPS35P1-201ENST00000563400 CCDC9Q9Y3X0 531 aaKnown RBP8.62□□□□□ -1.03
VPS35P1-201ENST00000563400 SLC24A3Q9HC58 644 aa8.6□□□□□ -1.03
VPS35P1-201ENST00000563400 NECTIN2Q92692 538 aa8.58□□□□□ -1.04
VPS35P1-201ENST00000563400 ZBTB7CA1YPR0 619 aa8.57□□□□□ -1.04
VPS35P1-201ENST00000563400 ZC3H15Q8WU90 426 aaKnown RBP8.57□□□□□ -1.04
VPS35P1-201ENST00000563400 FAM163AQ96GL9 167 aaPredicted RBP8.56□□□□□ -1.04
VPS35P1-201ENST00000563400 TTBK1Q5TCY1 1321 aaPredicted RBP8.55□□□□□ -1.04
VPS35P1-201ENST00000563400 P3H3Q8IVL6 736 aa8.54□□□□□ -1.04
VPS35P1-201ENST00000563400 PPP1R37O75864 691 aa8.54□□□□□ -1.04
VPS35P1-201ENST00000563400 TMC2Q8TDI7 906 aa8.54□□□□□ -1.04
VPS35P1-201ENST00000563400 KCNV2Q8TDN2 545 aa8.54□□□□□ -1.04
VPS35P1-201ENST00000563400 ARID3CA6NKF2 412 aa8.53□□□□□ -1.04
VPS35P1-201ENST00000563400 PDIA4P13667 645 aaKnown RBP8.53□□□□□ -1.04
VPS35P1-201ENST00000563400 RIMBP2O15034 1052 aa8.52□□□□□ -1.05
VPS35P1-201ENST00000563400 DOK7Q18PE1 504 aa8.51□□□□□ -1.05
VPS35P1-201ENST00000563400 MYT1Q01538 1121 aa8.5□□□□□ -1.05
VPS35P1-201ENST00000563400 ZNF710Q8N1W2 664 aa8.5□□□□□ -1.05
VPS35P1-201ENST00000563400 TMEM92Q6UXU6 159 aa8.47□□□□□ -1.05
VPS35P1-201ENST00000563400 C2orf72A6NCS6 295 aa8.46□□□□□ -1.05
VPS35P1-201ENST00000563400 APBB1O00213 710 aa8.46□□□□□ -1.05
VPS35P1-201ENST00000563400 ST18O60284 1047 aa8.46□□□□□ -1.05
VPS35P1-201ENST00000563400 IGSF3O75054 1194 aa8.46□□□□□ -1.05
VPS35P1-201ENST00000563400 KIF3CO14782 793 aa8.44□□□□□ -1.06
VPS35P1-201ENST00000563400 POTEMA6NI47 508 aa8.44□□□□□ -1.06
VPS35P1-201ENST00000563400 PDE4AP27815 886 aa8.44□□□□□ -1.06
VPS35P1-201ENST00000563400 IL27Q8NEV9 243 aa8.44□□□□□ -1.06
VPS35P1-201ENST00000563400 ZSWIM6Q9HCJ5 1215 aa8.44□□□□□ -1.06
VPS35P1-201ENST00000563400 GPHNQ9NQX3 736 aaPredicted RBP8.44□□□□□ -1.06
VPS35P1-201ENST00000563400 SHROOM4Q9ULL8 1493 aa8.43□□□□□ -1.06
VPS35P1-201ENST00000563400 POTEGQ6S5H5 508 aa8.42□□□□□ -1.06
VPS35P1-201ENST00000563400 GPBP1L1Q9HC44 474 aaPredicted RBP8.42□□□□□ -1.06
VPS35P1-201ENST00000563400 HOXB3P14651 431 aaPredicted RBP8.41□□□□□ -1.06
VPS35P1-201ENST00000563400 EIF5BO60841 1220 aaKnown RBP8.4□□□□□ -1.06
VPS35P1-201ENST00000563400 FOXK1P85037 733 aa8.4□□□□□ -1.06
VPS35P1-201ENST00000563400 EMP3P54852 163 aa8.39□□□□□ -1.07
VPS35P1-201ENST00000563400 LCE2DQ5TA82 110 aaPredicted RBP8.39□□□□□ -1.07
VPS35P1-201ENST00000563400 CADPS2Q86UW7 1296 aa8.39□□□□□ -1.07
VPS35P1-201ENST00000563400 WDR70Q9NW82 654 aa8.39□□□□□ -1.07
VPS35P1-201ENST00000563400 ABCC9O60706 1549 aa8.38□□□□□ -1.07
VPS35P1-201ENST00000563400 ZMYND10O75800 440 aa8.38□□□□□ -1.07
VPS35P1-201ENST00000563400 HOXB1P14653 301 aaPredicted RBP8.38□□□□□ -1.07
VPS35P1-201ENST00000563400 KCTD17Q8N5Z5 321 aa8.38□□□□□ -1.07
VPS35P1-201ENST00000563400 PCDH10Q9P2E7 1040 aa8.38□□□□□ -1.07
VPS35P1-201ENST00000563400 PLPP6Q8IY26 295 aa8.37□□□□□ -1.07
VPS35P1-201ENST00000563400 CRISPLD2Q9H0B8 497 aa8.37□□□□□ -1.07
VPS35P1-201ENST00000563400 SLC34A2O95436 690 aa8.36□□□□□ -1.07
VPS35P1-201ENST00000563400 MARVELD3Q96A59 401 aa8.36□□□□□ -1.07
VPS35P1-201ENST00000563400 RAD21O60216 631 aa8.35□□□□□ -1.07
VPS35P1-201ENST00000563400 TBC1D12O60347 775 aa8.35□□□□□ -1.07
VPS35P1-201ENST00000563400 DSG2Q14126 1118 aa8.35□□□□□ -1.07
VPS35P1-201ENST00000563400 LARP6Q9BRS8 491 aaKnown RBP8.35□□□□□ -1.07
VPS35P1-201ENST00000563400 PPP1R15BQ5SWA1 713 aa8.34□□□□□ -1.07
VPS35P1-201ENST00000563400 DDX27Q96GQ7 796 aaKnown RBP8.34□□□□□ -1.07
VPS35P1-201ENST00000563400 SEMA3EO15041 775 aa8.34□□□□□ -1.08
VPS35P1-201ENST00000563400 ARSIQ5FYB1 569 aa8.33□□□□□ -1.08
VPS35P1-201ENST00000563400 GPR153Q6NV75 609 aa8.33□□□□□ -1.08
VPS35P1-201ENST00000563400 RGS22Q8NE09 1264 aa8.33□□□□□ -1.08
VPS35P1-201ENST00000563400 PLSCR2Q9NRY7 297 aa8.33□□□□□ -1.08
VPS35P1-201ENST00000563400 NCKAP5LQ9HCH0 1330 aa8.33□□□□□ -1.08
VPS35P1-201ENST00000563400 CCDC82Q8N4S0 544 aa8.32□□□□□ -1.08
VPS35P1-201ENST00000563400 ERBB3P21860 1342 aa8.32□□□□□ -1.08
VPS35P1-201ENST00000563400 FAM205CA6NFA0 338 aa8.31□□□□□ -1.08
VPS35P1-201ENST00000563400 PCDHGA4Q9Y5G9 962 aa8.31□□□□□ -1.08
VPS35P1-201ENST00000563400 TESPA1A2RU30 521 aaPredicted RBP8.3□□□□□ -1.08
VPS35P1-201ENST00000563400 PTCD2Q8WV60 388 aaKnown RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms