RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 DNMT1P26358 1616 aaKnown RBP18.71■□□□□ 0.59
USP3-213ENST00000559711 ZCCHC11Q5TAX3 1644 aaKnown RBP18.7■□□□□ 0.58
USP3-213ENST00000559711 ZNF777Q9ULD5 760 aaPredicted RBP18.69■□□□□ 0.58
USP3-213ENST00000559711 RRP7BPQ9NSQ0 103 aa18.68■□□□□ 0.58
USP3-213ENST00000559711 CDC42BPAQ5VT25 1732 aa18.68■□□□□ 0.58
USP3-213ENST00000559711 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.67■□□□□ 0.58
USP3-213ENST00000559711 MAPKBP1O60336 1514 aa18.65■□□□□ 0.58
USP3-213ENST00000559711 KCNH8Q96L42 1107 aa18.64■□□□□ 0.57
USP3-213ENST00000559711 ACIN1Q9UKV3 1341 aaKnown RBP18.63■□□□□ 0.57
USP3-213ENST00000559711 PREX2Q70Z35 1606 aa18.62■□□□□ 0.57
USP3-213ENST00000559711 TTC37Q6PGP7 1564 aa18.62■□□□□ 0.57
USP3-213ENST00000559711 GCC2Q8IWJ2 1684 aa18.61■□□□□ 0.57
USP3-213ENST00000559711 ADGRL2O95490 1459 aa18.61■□□□□ 0.57
USP3-213ENST00000559711 NCOA1Q15788 1441 aa18.61■□□□□ 0.57
USP3-213ENST00000559711 RSPH4AQ5TD94 716 aa18.6■□□□□ 0.57
USP3-213ENST00000559711 MBD5Q9P267 1494 aa18.6■□□□□ 0.57
USP3-213ENST00000559711 PLCH2O75038 1416 aa18.6■□□□□ 0.57
USP3-213ENST00000559711 WDR7Q9Y4E6 1490 aa18.59■□□□□ 0.57
USP3-213ENST00000559711 SHANK2Q9UPX8 1470 aa18.59■□□□□ 0.57
USP3-213ENST00000559711 CDC42BPBQ9Y5S2 1711 aa18.58■□□□□ 0.56
USP3-213ENST00000559711 HNRNPMP52272 730 aaKnown RBP eCLIP18.57■□□□□ 0.56
USP3-213ENST00000559711 ARHGEF5Q12774 1597 aa18.57■□□□□ 0.56
USP3-213ENST00000559711 SAMD9LQ8IVG5 1584 aa18.57■□□□□ 0.56
USP3-213ENST00000559711 KIAA1107Q9UPP5 1409 aa18.57■□□□□ 0.56
USP3-213ENST00000559711 ANKRD30AQ9BXX3 1397 aa18.56■□□□□ 0.56
USP3-213ENST00000559711 NPM1P06748 294 aaKnown RBP eCLIP18.56■□□□□ 0.56
USP3-213ENST00000559711 TSPY4P0CV99 314 aa18.56■□□□□ 0.56
USP3-213ENST00000559711 TSPY10P0CW01 314 aa18.56■□□□□ 0.56
USP3-213ENST00000559711 ARHGAP5Q13017 1502 aa18.56■□□□□ 0.56
USP3-213ENST00000559711 ASXL2Q76L83 1435 aa18.55■□□□□ 0.56
USP3-213ENST00000559711 PLEKHH2Q8IVE3 1493 aa18.55■□□□□ 0.56
USP3-213ENST00000559711 C9orf84Q5VXU9 1444 aa18.55■□□□□ 0.56
USP3-213ENST00000559711 EFCAB2Q5VUJ9 269 aa18.54■□□□□ 0.56
USP3-213ENST00000559711 KDM6BO15054 1643 aa18.54■□□□□ 0.56
USP3-213ENST00000559711 CROCC2H7BZ55 1655 aa18.54■□□□□ 0.56
USP3-213ENST00000559711 CCDC141Q6ZP82 1450 aa18.53■□□□□ 0.56
USP3-213ENST00000559711 ARAP3Q8WWN8 1544 aa18.53■□□□□ 0.56
USP3-213ENST00000559711 MYO5CQ9NQX4 1742 aa18.52■□□□□ 0.56
USP3-213ENST00000559711 TIMELESSQ9UNS1 1208 aa18.5■□□□□ 0.55
USP3-213ENST00000559711 ADGBQ8N7X0 1667 aa18.5■□□□□ 0.55
USP3-213ENST00000559711 TRIM52Q96A61 297 aa18.5■□□□□ 0.55
USP3-213ENST00000559711 SIN3AQ96ST3 1273 aa18.49■□□□□ 0.55
USP3-213ENST00000559711 SYCP2Q9BX26 1530 aa18.48■□□□□ 0.55
USP3-213ENST00000559711 MPHOSPH9Q99550 1183 aa18.47■□□□□ 0.55
USP3-213ENST00000559711 ABCA9Q8IUA7 1624 aa18.47■□□□□ 0.55
USP3-213ENST00000559711 ANKRD50Q9ULJ7 1429 aa18.46■□□□□ 0.55
USP3-213ENST00000559711 DENND4BO75064 1496 aaPredicted RBP18.46■□□□□ 0.55
USP3-213ENST00000559711 ARHGEF12Q9NZN5 1544 aa18.46■□□□□ 0.55
USP3-213ENST00000559711 KIF15Q9NS87 1388 aa18.44■□□□□ 0.54
USP3-213ENST00000559711 MAST1Q9Y2H9 1570 aa18.44■□□□□ 0.54
USP3-213ENST00000559711 NEUROD1Q13562 356 aa18.43■□□□□ 0.54
USP3-213ENST00000559711 ABCC1P33527 1531 aa18.42■□□□□ 0.54
USP3-213ENST00000559711 CYB5RLQ6IPT4 315 aa18.42■□□□□ 0.54
USP3-213ENST00000559711 ZNF316A6NFI3 1004 aaPredicted RBP18.41■□□□□ 0.54
USP3-213ENST00000559711 FANCAO15360 1455 aa18.4■□□□□ 0.54
USP3-213ENST00000559711 RIMBP3CA6NJZ7 1639 aa18.4■□□□□ 0.54
USP3-213ENST00000559711 RIMBP3BA6NNM3 1639 aa18.4■□□□□ 0.54
USP3-213ENST00000559711 RIMBP3Q9UFD9 1639 aa18.4■□□□□ 0.54
USP3-213ENST00000559711 TRAPPC8Q9Y2L5 1435 aa18.39■□□□□ 0.53
USP3-213ENST00000559711 PZPP20742 1482 aa18.38■□□□□ 0.53
USP3-213ENST00000559711 SLC4A1APQ9BWU0 796 aaKnown RBP18.38■□□□□ 0.53
USP3-213ENST00000559711 RTEL1-TNFRSF6BF6WH68 1400 aa18.35■□□□□ 0.53
USP3-213ENST00000559711 ANKRD30BQ9BXX2 1392 aa18.35■□□□□ 0.53
USP3-213ENST00000559711 PLXNC1O60486 1568 aa18.35■□□□□ 0.53
USP3-213ENST00000559711 CD109Q6YHK3 1445 aa18.35■□□□□ 0.53
USP3-213ENST00000559711 PPP1R15AO75807 674 aaPredicted RBP18.34■□□□□ 0.53
USP3-213ENST00000559711 AFAP1Q8N556 730 aa18.33■□□□□ 0.52
USP3-213ENST00000559711 KDM5DQ9BY66 1539 aa18.33■□□□□ 0.52
USP3-213ENST00000559711 SPAG9O60271 1321 aaKnown RBP18.33■□□□□ 0.52
USP3-213ENST00000559711 NUP155O75694 1391 aa18.32■□□□□ 0.52
USP3-213ENST00000559711 TONSLQ96HA7 1378 aa18.32■□□□□ 0.52
USP3-213ENST00000559711 SCAPERQ9BY12 1400 aa18.32■□□□□ 0.52
USP3-213ENST00000559711 FOXD1Q16676 465 aa18.31■□□□□ 0.52
USP3-213ENST00000559711 ADGRL1O94910 1474 aa18.31■□□□□ 0.52
USP3-213ENST00000559711 DUOX2Q9NRD8 1548 aa18.31■□□□□ 0.52
USP3-213ENST00000559711 ERBINQ96RT1 1412 aa18.29■□□□□ 0.52
USP3-213ENST00000559711 PKD2Q13563 968 aa18.28■□□□□ 0.52
USP3-213ENST00000559711 ZFYVE16Q7Z3T8 1539 aa18.26■□□□□ 0.51
USP3-213ENST00000559711 RPRD2Q5VT52 1461 aaKnown RBP18.25■□□□□ 0.51
USP3-213ENST00000559711 GLI2P10070 1586 aa18.24■□□□□ 0.51
USP3-213ENST00000559711 CFAP74Q9C0B2 1584 aa18.24■□□□□ 0.51
USP3-213ENST00000559711 NEO1Q92859 1461 aa18.23■□□□□ 0.51
USP3-213ENST00000559711 DIEXFQ68CQ4 756 aaKnown RBP18.22■□□□□ 0.51
USP3-213ENST00000559711 UNC13BO14795 1591 aa18.22■□□□□ 0.51
USP3-213ENST00000559711 ZNF518AQ6AHZ1 1483 aa18.22■□□□□ 0.51
USP3-213ENST00000559711 INO80Q9ULG1 1556 aaPredicted RBP18.22■□□□□ 0.51
USP3-213ENST00000559711 ATP7AQ04656 1500 aa18.21■□□□□ 0.51
USP3-213ENST00000559711 FAM135AQ9P2D6 1515 aa18.21■□□□□ 0.51
USP3-213ENST00000559711 MAGI2Q86UL8 1455 aa18.21■□□□□ 0.51
USP3-213ENST00000559711 POGZQ7Z3K3 1410 aa18.19■□□□□ 0.5
USP3-213ENST00000559711 L3MBTL2Q969R5 705 aa18.18■□□□□ 0.5
USP3-213ENST00000559711 DHX29Q7Z478 1369 aaKnown RBP18.18■□□□□ 0.5
USP3-213ENST00000559711 MAP3K4Q9Y6R4 1608 aa18.17■□□□□ 0.5
USP3-213ENST00000559711 FAM69CQ0P6D2 419 aa18.16■□□□□ 0.5
USP3-213ENST00000559711 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.16■□□□□ 0.51e-8■■■□□ 15.2
USP3-213ENST00000559711 MLH3Q9UHC1 1453 aa18.16■□□□□ 0.5
USP3-213ENST00000559711 KDM5CP41229 1560 aa18.16■□□□□ 0.5
USP3-213ENST00000559711 TEX14Q8IWB6 1497 aa18.15■□□□□ 0.5
USP3-213ENST00000559711 IQGAP3Q86VI3 1631 aa18.14■□□□□ 0.5
USP3-213ENST00000559711 DIP2BQ9P265 1576 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms