RNA–Protein interactions for RNA: ENST00000558440.5

ZEB1-211, Transcript of zinc finger E-box binding homeobox 1, humanhuman

TSL 1 (best)

Gene ZEB1, Length 886 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZEB1-211ENST00000558440 PHF8Q9UPP1 1060 aa12.44□□□□□ -0.42
ZEB1-211ENST00000558440 G3V3G9 751 aa12.43□□□□□ -0.42
ZEB1-211ENST00000558440 MS4A4AQ96JQ5 239 aa12.43□□□□□ -0.42
ZEB1-211ENST00000558440 TMEM121BQ9BXQ6 578 aaPredicted RBP12.43□□□□□ -0.42
ZEB1-211ENST00000558440 NLRP6P59044 892 aa12.39□□□□□ -0.43
ZEB1-211ENST00000558440 FBXO22Q8NEZ5 403 aa12.38□□□□□ -0.43
ZEB1-211ENST00000558440 MMRN1Q13201 1228 aa12.37□□□□□ -0.43
ZEB1-211ENST00000558440 MFRPQ9BY79 579 aa12.37□□□□□ -0.43
ZEB1-211ENST00000558440 SPNS2Q8IVW8 549 aa12.36□□□□□ -0.43
ZEB1-211ENST00000558440 MARVELD3Q96A59 401 aa12.36□□□□□ -0.43
ZEB1-211ENST00000558440 MICALL2Q8IY33 904 aa12.34□□□□□ -0.43
ZEB1-211ENST00000558440 HS6ST3Q8IZP7 471 aa12.33□□□□□ -0.44
ZEB1-211ENST00000558440 CHGAP10645 457 aaKnown RBP12.27□□□□□ -0.45
ZEB1-211ENST00000558440 DNAJC5Q9H3Z4 198 aa12.25□□□□□ -0.45
ZEB1-211ENST00000558440 EMP3P54852 163 aa12.24□□□□□ -0.45
ZEB1-211ENST00000558440 TMEM92Q6UXU6 159 aa12.23□□□□□ -0.45
ZEB1-211ENST00000558440 FAM205CA6NFA0 338 aa12.16□□□□□ -0.46
ZEB1-211ENST00000558440 PPP1R37O75864 691 aa12.16□□□□□ -0.46
ZEB1-211ENST00000558440 HOXB3P14651 431 aaPredicted RBP12.16□□□□□ -0.46
ZEB1-211ENST00000558440 HS3ST6Q96QI5 342 aa12.16□□□□□ -0.46
ZEB1-211ENST00000558440 NKX1-1Q15270 411 aaPredicted RBP12.15□□□□□ -0.46
ZEB1-211ENST00000558440 DOK7Q18PE1 504 aa12.12□□□□□ -0.47
ZEB1-211ENST00000558440 POTEB3A0JP26 581 aa12.11□□□□□ -0.47
ZEB1-211ENST00000558440 POTEBQ6S5H4 581 aa12.11□□□□□ -0.47
ZEB1-211ENST00000558440 KRTAP3-3Q9BYR6 98 aa12.11□□□□□ -0.47
ZEB1-211ENST00000558440 KRTAP3-2Q9BYR7 98 aa12.11□□□□□ -0.47
ZEB1-211ENST00000558440 AMER1Q5JTC6 1135 aaPredicted RBP12.1□□□□□ -0.47
ZEB1-211ENST00000558440 CUX2O14529 1486 aa12.08□□□□□ -0.47
ZEB1-211ENST00000558440 KIF3CO14782 793 aa12.08□□□□□ -0.48
ZEB1-211ENST00000558440 ZNF710Q8N1W2 664 aa12.08□□□□□ -0.48
ZEB1-211ENST00000558440 RYDENQ9NUL5 291 aaKnown RBP12.08□□□□□ -0.48
ZEB1-211ENST00000558440 C2orf72A6NCS6 295 aa12.06□□□□□ -0.48
ZEB1-211ENST00000558440 RIMBP2O15034 1052 aa12.06□□□□□ -0.48
ZEB1-211ENST00000558440 ERCC6Q03468 1493 aa12.06□□□□□ -0.48
ZEB1-211ENST00000558440 HOXB1P14653 301 aaPredicted RBP12.04□□□□□ -0.48
ZEB1-211ENST00000558440 ZSWIM6Q9HCJ5 1215 aa12.03□□□□□ -0.48
ZEB1-211ENST00000558440 TMC2Q8TDI7 906 aa12.02□□□□□ -0.49
ZEB1-211ENST00000558440 RTN4Q9NQC3 1192 aaKnown RBP12.02□□□□□ -0.49
ZEB1-211ENST00000558440 NCAPD3P42695 1498 aa12.01□□□□□ -0.49
ZEB1-211ENST00000558440 GTPBP6O43824 516 aaPredicted RBP12□□□□□ -0.49
ZEB1-211ENST00000558440 GPR153Q6NV75 609 aa11.97□□□□□ -0.49
ZEB1-211ENST00000558440 ATAD2BQ9ULI0 1458 aa11.95□□□□□ -0.5
ZEB1-211ENST00000558440 ERBB3P21860 1342 aa11.95□□□□□ -0.5
ZEB1-211ENST00000558440 SMARCA2P51531 1590 aa11.95□□□□□ -0.5
ZEB1-211ENST00000558440 HMGXB3Q12766 1538 aa11.95□□□□□ -0.5
ZEB1-211ENST00000558440 SMARCA4P51532 1647 aa11.94□□□□□ -0.5
ZEB1-211ENST00000558440 GPHNQ9NQX3 736 aaPredicted RBP11.93□□□□□ -0.5
ZEB1-211ENST00000558440 SLC34A2O95436 690 aa11.92□□□□□ -0.5
ZEB1-211ENST00000558440 ARSIQ5FYB1 569 aa11.92□□□□□ -0.5
ZEB1-211ENST00000558440 FOXK1P85037 733 aa11.91□□□□□ -0.5
ZEB1-211ENST00000558440 NESP48681 1621 aa11.89□□□□□ -0.51
ZEB1-211ENST00000558440 BBXQ8WY36 941 aaPredicted RBP11.88□□□□□ -0.51
ZEB1-211ENST00000558440 DSG2Q14126 1118 aa11.87□□□□□ -0.51
ZEB1-211ENST00000558440 PLPP6Q8IY26 295 aa11.87□□□□□ -0.51
ZEB1-211ENST00000558440 KHSRPQ92945 711 aaKnown RBP eCLIP11.87□□□□□ -0.516e-7■■■■□ 21.8
ZEB1-211ENST00000558440 CRISPLD2Q9H0B8 497 aa11.87□□□□□ -0.51
ZEB1-211ENST00000558440 PCDHGA4Q9Y5G9 962 aa11.86□□□□□ -0.51
ZEB1-211ENST00000558440 BAZ1BQ9UIG0 1483 aaKnown RBP11.86□□□□□ -0.51
ZEB1-211ENST00000558440 THOC2Q8NI27 1593 aaKnown RBP11.85□□□□□ -0.51
ZEB1-211ENST00000558440 VARS2Q5ST30 1063 aaKnown RBP11.85□□□□□ -0.51
ZEB1-211ENST00000558440 RNF166Q96A37 237 aaPredicted RBP11.85□□□□□ -0.51
ZEB1-211ENST00000558440 BAZ1AQ9NRL2 1556 aaPredicted RBP11.84□□□□□ -0.51
ZEB1-211ENST00000558440 LAMC3Q9Y6N6 1575 aa11.83□□□□□ -0.52
ZEB1-211ENST00000558440 NCKAP5LQ9HCH0 1330 aa11.83□□□□□ -0.52
ZEB1-211ENST00000558440 NUDT7P0C024 238 aa11.82□□□□□ -0.52
ZEB1-211ENST00000558440 KIF21AQ7Z4S6 1674 aa11.81□□□□□ -0.52
ZEB1-211ENST00000558440 ZNF316A6NFI3 1004 aaPredicted RBP11.81□□□□□ -0.52
ZEB1-211ENST00000558440 PDE4AP27815 886 aa11.81□□□□□ -0.52
ZEB1-211ENST00000558440 PTCD2Q8WV60 388 aaKnown RBP11.81□□□□□ -0.52
ZEB1-211ENST00000558440 PEG3Q9GZU2 1588 aa11.8□□□□□ -0.52
ZEB1-211ENST00000558440 PPP1R15BQ5SWA1 713 aa11.79□□□□□ -0.52
ZEB1-211ENST00000558440 MYT1LQ9UL68 1186 aa11.79□□□□□ -0.52
ZEB1-211ENST00000558440 ZNF687Q8N1G0 1237 aa11.77□□□□□ -0.53
ZEB1-211ENST00000558440 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.75□□□□□ -0.53
ZEB1-211ENST00000558440 LHX6Q9UPM6 363 aa11.75□□□□□ -0.53
ZEB1-211ENST00000558440 KDM4FA0A1W2PPD8 638 aa11.74□□□□□ -0.53
ZEB1-211ENST00000558440 MFSD10Q14728 455 aa11.74□□□□□ -0.53
ZEB1-211ENST00000558440 CADPS2Q86UW7 1296 aa11.74□□□□□ -0.53
ZEB1-211ENST00000558440 LARP6Q9BRS8 491 aaKnown RBP11.74□□□□□ -0.53
ZEB1-211ENST00000558440 PDS5BQ9NTI5 1447 aa11.74□□□□□ -0.53
ZEB1-211ENST00000558440 DDX27Q96GQ7 796 aaKnown RBP11.73□□□□□ -0.53
ZEB1-211ENST00000558440 TBC1D12O60347 775 aa11.72□□□□□ -0.53
ZEB1-211ENST00000558440 SPRYD3Q8NCJ5 442 aa11.72□□□□□ -0.53
ZEB1-211ENST00000558440 OXER1Q8TDS5 423 aa11.72□□□□□ -0.53
ZEB1-211ENST00000558440 MROH2BQ7Z745 1585 aa11.71□□□□□ -0.54
ZEB1-211ENST00000558440 UPF1Q92900 1129 aaKnown RBP eCLIP11.69□□□□□ -0.54
ZEB1-211ENST00000558440 PTGER2P43116 358 aa11.68□□□□□ -0.54
ZEB1-211ENST00000558440 PSDA5PKW4 1024 aaPredicted RBP11.67□□□□□ -0.54
ZEB1-211ENST00000558440 MRC2Q9UBG0 1479 aa11.65□□□□□ -0.54
ZEB1-211ENST00000558440 ANKRD13DQ6ZTN6 518 aa11.65□□□□□ -0.54
ZEB1-211ENST00000558440 PAXIP1Q6ZW49 1069 aaPredicted RBP11.65□□□□□ -0.54
ZEB1-211ENST00000558440 CADPSQ9ULU8 1353 aa11.64□□□□□ -0.55
ZEB1-211ENST00000558440 PBX2P40425 430 aa11.63□□□□□ -0.55
ZEB1-211ENST00000558440 CFAP44Q96MT7 982 aa11.63□□□□□ -0.55
ZEB1-211ENST00000558440 WDR62O43379 1518 aa11.63□□□□□ -0.55
ZEB1-211ENST00000558440 POTEEQ6S8J3 1075 aa11.61□□□□□ -0.55
ZEB1-211ENST00000558440 WIZO95785 1651 aa11.6□□□□□ -0.55
ZEB1-211ENST00000558440 EMILIN3Q9NT22 766 aa11.6□□□□□ -0.55
ZEB1-211ENST00000558440 LSM11P83369 360 aaKnown RBP eCLIP11.58□□□□□ -0.56
ZEB1-211ENST00000558440 PPP4R3BQ5MIZ7 849 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms