RNA–Protein interactions for RNA: ENST00000557352.1

VRK1-207, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 599 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-207ENST00000557352 POTEBQ6S5H4 581 aa12.92□□□□□ -0.34
VRK1-207ENST00000557352 HOXB1P14653 301 aaPredicted RBP12.9□□□□□ -0.34
VRK1-207ENST00000557352 ZNF710Q8N1W2 664 aa12.9□□□□□ -0.34
VRK1-207ENST00000557352 DNAJC5Q9H3Z4 198 aa12.88□□□□□ -0.35
VRK1-207ENST00000557352 FAM205CA6NFA0 338 aa12.87□□□□□ -0.35
VRK1-207ENST00000557352 HS3ST6Q96QI5 342 aa12.87□□□□□ -0.35
VRK1-207ENST00000557352 PPP1R37O75864 691 aa12.86□□□□□ -0.35
VRK1-207ENST00000557352 DCAF8L2P0C7V8 631 aa12.85□□□□□ -0.35
VRK1-207ENST00000557352 NKX1-1Q15270 411 aaPredicted RBP12.85□□□□□ -0.35
VRK1-207ENST00000557352 KIF3CO14782 793 aa12.84□□□□□ -0.35
VRK1-207ENST00000557352 RIMBP2O15034 1052 aa12.83□□□□□ -0.36
VRK1-207ENST00000557352 ZSWIM6Q9HCJ5 1215 aa12.82□□□□□ -0.36
VRK1-207ENST00000557352 C2orf72A6NCS6 295 aa12.81□□□□□ -0.36
VRK1-207ENST00000557352 AMER1Q5JTC6 1135 aaPredicted RBP12.81□□□□□ -0.36
VRK1-207ENST00000557352 GPR153Q6NV75 609 aa12.81□□□□□ -0.36
VRK1-207ENST00000557352 KRTAP3-3Q9BYR6 98 aa12.78□□□□□ -0.36
VRK1-207ENST00000557352 KRTAP3-2Q9BYR7 98 aa12.78□□□□□ -0.36
VRK1-207ENST00000557352 RTN4Q9NQC3 1192 aaKnown RBP12.78□□□□□ -0.36
VRK1-207ENST00000557352 ERBB3P21860 1342 aa12.75□□□□□ -0.37
VRK1-207ENST00000557352 SPNS2Q8IVW8 549 aa12.75□□□□□ -0.37
VRK1-207ENST00000557352 ARSIQ5FYB1 569 aa12.74□□□□□ -0.37
VRK1-207ENST00000557352 RYDENQ9NUL5 291 aaKnown RBP12.73□□□□□ -0.37
VRK1-207ENST00000557352 VARS2Q5ST30 1063 aaKnown RBP12.71□□□□□ -0.37
VRK1-207ENST00000557352 TMC2Q8TDI7 906 aa12.71□□□□□ -0.37
VRK1-207ENST00000557352 KHSRPQ92945 711 aaKnown RBP eCLIP12.71□□□□□ -0.37
VRK1-207ENST00000557352 GTPBP6O43824 516 aaPredicted RBP12.69□□□□□ -0.38
VRK1-207ENST00000557352 MMRN1Q13201 1228 aa12.68□□□□□ -0.38
VRK1-207ENST00000557352 SLC34A2O95436 690 aa12.66□□□□□ -0.38
VRK1-207ENST00000557352 ZNF687Q8N1G0 1237 aa12.62□□□□□ -0.39
VRK1-207ENST00000557352 PCDHGA4Q9Y5G9 962 aa12.62□□□□□ -0.39
VRK1-207ENST00000557352 ZNF316A6NFI3 1004 aaPredicted RBP12.61□□□□□ -0.39
VRK1-207ENST00000557352 GPHNQ9NQX3 736 aaPredicted RBP12.61□□□□□ -0.39
VRK1-207ENST00000557352 NUDT7P0C024 238 aa12.6□□□□□ -0.39
VRK1-207ENST00000557352 FOXK1P85037 733 aa12.6□□□□□ -0.39
VRK1-207ENST00000557352 DSG2Q14126 1118 aa12.57□□□□□ -0.4
VRK1-207ENST00000557352 BBXQ8WY36 941 aaPredicted RBP12.57□□□□□ -0.4
VRK1-207ENST00000557352 PLPP6Q8IY26 295 aa12.56□□□□□ -0.4
VRK1-207ENST00000557352 PTCD2Q8WV60 388 aaKnown RBP12.54□□□□□ -0.4
VRK1-207ENST00000557352 LHX6Q9UPM6 363 aa12.54□□□□□ -0.4
VRK1-207ENST00000557352 KDM4FA0A1W2PPD8 638 aa12.52□□□□□ -0.41
VRK1-207ENST00000557352 CRISPLD2Q9H0B8 497 aa12.52□□□□□ -0.41
VRK1-207ENST00000557352 NCKAP5LQ9HCH0 1330 aa12.5□□□□□ -0.41
VRK1-207ENST00000557352 PDE4AP27815 886 aa12.47□□□□□ -0.41
VRK1-207ENST00000557352 POTEEQ6S8J3 1075 aa12.45□□□□□ -0.42
VRK1-207ENST00000557352 PPP1R15BQ5SWA1 713 aa12.43□□□□□ -0.42
VRK1-207ENST00000557352 CADPS2Q86UW7 1296 aa12.43□□□□□ -0.42
VRK1-207ENST00000557352 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.43□□□□□ -0.42
VRK1-207ENST00000557352 SPRYD3Q8NCJ5 442 aa12.42□□□□□ -0.42
VRK1-207ENST00000557352 LARP6Q9BRS8 491 aaKnown RBP12.42□□□□□ -0.42
VRK1-207ENST00000557352 PBX2P40425 430 aa12.41□□□□□ -0.42
VRK1-207ENST00000557352 LSM11P83369 360 aaKnown RBP eCLIP12.41□□□□□ -0.42
VRK1-207ENST00000557352 ANKRD13DQ6ZTN6 518 aa12.41□□□□□ -0.42
VRK1-207ENST00000557352 OXER1Q8TDS5 423 aa12.41□□□□□ -0.42
VRK1-207ENST00000557352 TBC1D12O60347 775 aa12.4□□□□□ -0.42
VRK1-207ENST00000557352 AXIN2Q9Y2T1 843 aa12.4□□□□□ -0.42
VRK1-207ENST00000557352 MFSD10Q14728 455 aa12.38□□□□□ -0.43
VRK1-207ENST00000557352 DDX27Q96GQ7 796 aaKnown RBP12.38□□□□□ -0.43
VRK1-207ENST00000557352 PSDA5PKW4 1024 aaPredicted RBP12.37□□□□□ -0.43
VRK1-207ENST00000557352 UPF1Q92900 1129 aaKnown RBP eCLIP12.37□□□□□ -0.43
VRK1-207ENST00000557352 MYT1LQ9UL68 1186 aa12.37□□□□□ -0.43
VRK1-207ENST00000557352 RNF166Q96A37 237 aaPredicted RBP12.36□□□□□ -0.43
VRK1-207ENST00000557352 PAXIP1Q6ZW49 1069 aaPredicted RBP12.34□□□□□ -0.43
VRK1-207ENST00000557352 CFAP44Q96MT7 982 aa12.34□□□□□ -0.43
VRK1-207ENST00000557352 PTGER2P43116 358 aa12.33□□□□□ -0.44
VRK1-207ENST00000557352 ARHGAP33O14559 1287 aa12.32□□□□□ -0.44
VRK1-207ENST00000557352 PPP4R3BQ5MIZ7 849 aa12.29□□□□□ -0.44
VRK1-207ENST00000557352 PSEN2P49810 448 aa12.28□□□□□ -0.44
VRK1-207ENST00000557352 DMRTA1Q5VZB9 504 aa12.26□□□□□ -0.45
VRK1-207ENST00000557352 ANO8Q9HCE9 1232 aaPredicted RBP12.26□□□□□ -0.45
VRK1-207ENST00000557352 EMILIN3Q9NT22 766 aa12.26□□□□□ -0.45
VRK1-207ENST00000557352 ADGRD1Q6QNK2 874 aa12.25□□□□□ -0.45
VRK1-207ENST00000557352 EVI5O60447 810 aa12.23□□□□□ -0.45
VRK1-207ENST00000557352 ZNF454Q8N9F8 522 aa12.23□□□□□ -0.45
VRK1-207ENST00000557352 FOSBP53539 338 aa12.22□□□□□ -0.45
VRK1-207ENST00000557352 TK2O00142 265 aa12.21□□□□□ -0.45
VRK1-207ENST00000557352 MAP3K9P80192 1104 aa12.21□□□□□ -0.45
VRK1-207ENST00000557352 CAMK2BQ13554 666 aa12.21□□□□□ -0.45
VRK1-207ENST00000557352 KCNK17Q96T54 332 aa12.2□□□□□ -0.46
VRK1-207ENST00000557352 HRO43593 1189 aa12.19□□□□□ -0.46
VRK1-207ENST00000557352 BCL2L12Q9HB09 334 aa12.18□□□□□ -0.46
VRK1-207ENST00000557352 JPH4Q96JJ6 628 aa12.17□□□□□ -0.46
VRK1-207ENST00000557352 KCNH8Q96L42 1107 aa12.12□□□□□ -0.47
VRK1-207ENST00000557352 DPYSL4O14531 572 aa12.11□□□□□ -0.47
VRK1-207ENST00000557352 ZDHHC16Q969W1 377 aa12.11□□□□□ -0.47
VRK1-207ENST00000557352 ADAM33Q9BZ11 813 aa12.11□□□□□ -0.47
VRK1-207ENST00000557352 VPS9D1Q9Y2B5 631 aa12.11□□□□□ -0.47
VRK1-207ENST00000557352 PCDHGA10Q9Y5H3 936 aa12.1□□□□□ -0.47
VRK1-207ENST00000557352 PTPREP23469 700 aa12.09□□□□□ -0.47
VRK1-207ENST00000557352 SLC4A5Q9BY07 1137 aa12.09□□□□□ -0.47
VRK1-207ENST00000557352 TSHZ2Q9NRE2 1034 aa12.09□□□□□ -0.47
VRK1-207ENST00000557352 WDR70Q9NW82 654 aa12.09□□□□□ -0.47
VRK1-207ENST00000557352 E2F4Q16254 413 aa12.07□□□□□ -0.48
VRK1-207ENST00000557352 ZBED2Q9BTP6 218 aa12.06□□□□□ -0.48
VRK1-207ENST00000557352 BHMG1C9JSJ3 638 aaPredicted RBP12.03□□□□□ -0.48
VRK1-207ENST00000557352 HCSTQ9UBK5 93 aa12.03□□□□□ -0.48
VRK1-207ENST00000557352 PHF14O94880 888 aa12.02□□□□□ -0.49
VRK1-207ENST00000557352 STAC3Q96MF2 364 aa12.01□□□□□ -0.49
VRK1-207ENST00000557352 TYW1BQ6NUM6 668 aa12□□□□□ -0.49
VRK1-207ENST00000557352 FBXW7Q969H0 707 aa12□□□□□ -0.49
VRK1-207ENST00000557352 KCTD12Q96CX2 325 aaKnown RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms