RNA–Protein interactions for RNA: ENST00000555535.1

SRP54-207, Transcript of signal recognition particle 54, humanhuman

TSL 4

Gene SRP54, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-207ENST00000555535 VGFO15240 615 aaPredicted RBP12.77□□□□□ -0.37
SRP54-207ENST00000555535 MS4A4AQ96JQ5 239 aa12.74□□□□□ -0.37
SRP54-207ENST00000555535 ZNF316A6NFI3 1004 aaPredicted RBP12.73□□□□□ -0.37
SRP54-207ENST00000555535 ARSIQ5FYB1 569 aa12.73□□□□□ -0.37
SRP54-207ENST00000555535 ANKRD13DQ6ZTN6 518 aa12.73□□□□□ -0.37
SRP54-207ENST00000555535 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.72□□□□□ -0.37
SRP54-207ENST00000555535 ZFP91Q96JP5 570 aaPredicted RBP12.72□□□□□ -0.37
SRP54-207ENST00000555535 TAOK2Q9UL54 1235 aa12.72□□□□□ -0.37
SRP54-207ENST00000555535 PHF8Q9UPP1 1060 aa12.72□□□□□ -0.37
SRP54-207ENST00000555535 NLRP6P59044 892 aa12.71□□□□□ -0.37
SRP54-207ENST00000555535 PBX2P40425 430 aa12.69□□□□□ -0.38
SRP54-207ENST00000555535 LSM11P83369 360 aaKnown RBP eCLIP12.69□□□□□ -0.38
SRP54-207ENST00000555535 RNF25Q96BH1 459 aaPredicted RBP12.64□□□□□ -0.39
SRP54-207ENST00000555535 FBXO22Q8NEZ5 403 aa12.58□□□□□ -0.4
SRP54-207ENST00000555535 KHSRPQ92945 711 aaKnown RBP eCLIP12.58□□□□□ -0.42e-7■□□□□ 9.6
SRP54-207ENST00000555535 SLC34A2O95436 690 aa12.56□□□□□ -0.4
SRP54-207ENST00000555535 KIF3CO14782 793 aa12.55□□□□□ -0.4
SRP54-207ENST00000555535 BCL11BQ9C0K0 894 aaPredicted RBP12.55□□□□□ -0.4
SRP54-207ENST00000555535 HCSTQ9UBK5 93 aa12.55□□□□□ -0.4
SRP54-207ENST00000555535 PSDA5PKW4 1024 aaPredicted RBP12.53□□□□□ -0.4
SRP54-207ENST00000555535 NUDT7P0C024 238 aa12.53□□□□□ -0.4
SRP54-207ENST00000555535 PLA2G2EQ9NZK7 142 aa12.52□□□□□ -0.41
SRP54-207ENST00000555535 C2orf72A6NCS6 295 aa12.51□□□□□ -0.41
SRP54-207ENST00000555535 STK24Q9Y6E0 443 aa12.51□□□□□ -0.41
SRP54-207ENST00000555535 LHX6Q9UPM6 363 aa12.5□□□□□ -0.41
SRP54-207ENST00000555535 PCDHGA4Q9Y5G9 962 aa12.49□□□□□ -0.41
SRP54-207ENST00000555535 MFRPQ9BY79 579 aa12.48□□□□□ -0.41
SRP54-207ENST00000555535 TMC2Q8TDI7 906 aa12.47□□□□□ -0.41
SRP54-207ENST00000555535 ARHGAP33O14559 1287 aa12.46□□□□□ -0.41
SRP54-207ENST00000555535 ADGRD1Q6QNK2 874 aa12.44□□□□□ -0.42
SRP54-207ENST00000555535 AXIN2Q9Y2T1 843 aa12.44□□□□□ -0.42
SRP54-207ENST00000555535 STK25O00506 426 aa12.43□□□□□ -0.42
SRP54-207ENST00000555535 TK2O00142 265 aa12.42□□□□□ -0.42
SRP54-207ENST00000555535 POTEEQ6S8J3 1075 aa12.42□□□□□ -0.42
SRP54-207ENST00000555535 STAC3Q96MF2 364 aa12.33□□□□□ -0.44
SRP54-207ENST00000555535 PTCD2Q8WV60 388 aaKnown RBP12.32□□□□□ -0.44
SRP54-207ENST00000555535 HRO43593 1189 aa12.3□□□□□ -0.44
SRP54-207ENST00000555535 PPP4R3BQ5MIZ7 849 aa12.3□□□□□ -0.44
SRP54-207ENST00000555535 KCNH8Q96L42 1107 aa12.3□□□□□ -0.44
SRP54-207ENST00000555535 ECM2O94769 699 aaPredicted RBP12.29□□□□□ -0.44
SRP54-207ENST00000555535 KDM4FA0A1W2PPD8 638 aa12.28□□□□□ -0.44
SRP54-207ENST00000555535 TBC1D12O60347 775 aa12.28□□□□□ -0.44
SRP54-207ENST00000555535 RGS20O76081 388 aa12.24□□□□□ -0.45
SRP54-207ENST00000555535 DMRTA1Q5VZB9 504 aa12.24□□□□□ -0.45
SRP54-207ENST00000555535 FOXK1P85037 733 aa12.23□□□□□ -0.45
SRP54-207ENST00000555535 KCTD12Q96CX2 325 aaKnown RBP12.23□□□□□ -0.45
SRP54-207ENST00000555535 PSEN2P49810 448 aa12.22□□□□□ -0.45
SRP54-207ENST00000555535 PLPP6Q8IY26 295 aa12.19□□□□□ -0.46
SRP54-207ENST00000555535 IFFO2Q5TF58 517 aa12.18□□□□□ -0.46
SRP54-207ENST00000555535 GPHNQ9NQX3 736 aaPredicted RBP12.18□□□□□ -0.46
SRP54-207ENST00000555535 PPP1R37O75864 691 aa12.17□□□□□ -0.46
SRP54-207ENST00000555535 KCNK17Q96T54 332 aa12.15□□□□□ -0.46
SRP54-207ENST00000555535 RGL2O15211 777 aa12.13□□□□□ -0.47
SRP54-207ENST00000555535 SLC4A5Q9BY07 1137 aa12.13□□□□□ -0.47
SRP54-207ENST00000555535 VPS9D1Q9Y2B5 631 aa12.12□□□□□ -0.47
SRP54-207ENST00000555535 PTPN5P54829 565 aa12.09□□□□□ -0.47
SRP54-207ENST00000555535 DSG2Q14126 1118 aa12.09□□□□□ -0.47
SRP54-207ENST00000555535 PKD2Q13563 968 aa12.07□□□□□ -0.48
SRP54-207ENST00000555535 IRX2Q9BZI1 471 aaPredicted RBP12.06□□□□□ -0.48
SRP54-207ENST00000555535 BCL2L12Q9HB09 334 aa12.06□□□□□ -0.48
SRP54-207ENST00000555535 GOLGA8CPA6NN73 597 aa12.05□□□□□ -0.48
SRP54-207ENST00000555535 OXER1Q8TDS5 423 aa12.04□□□□□ -0.48
SRP54-207ENST00000555535 THSD4Q6ZMP0 1018 aa12.03□□□□□ -0.48
SRP54-207ENST00000555535 ZNF454Q8N9F8 522 aa12.03□□□□□ -0.48
SRP54-207ENST00000555535 PTPREP23469 700 aa12.02□□□□□ -0.49
SRP54-207ENST00000555535 A0A0G2JS52 829 aa12.01□□□□□ -0.49
SRP54-207ENST00000555535 BHMG1C9JSJ3 638 aaPredicted RBP12□□□□□ -0.49
SRP54-207ENST00000555535 MRPL50Q8N5N7 158 aaKnown RBP12□□□□□ -0.49
SRP54-207ENST00000555535 HS6ST3Q8IZP7 471 aa11.99□□□□□ -0.49
SRP54-207ENST00000555535 WNT2BQ93097 391 aa11.99□□□□□ -0.49
SRP54-207ENST00000555535 RYDENQ9NUL5 291 aaKnown RBP11.99□□□□□ -0.49
SRP54-207ENST00000555535 NBPF3Q9H094 633 aa11.98□□□□□ -0.49
SRP54-207ENST00000555535 FOSBP53539 338 aa11.96□□□□□ -0.49
SRP54-207ENST00000555535 ZBED2Q9BTP6 218 aa11.95□□□□□ -0.5
SRP54-207ENST00000555535 UPF1Q92900 1129 aaKnown RBP eCLIP11.94□□□□□ -0.5
SRP54-207ENST00000555535 JPH4Q96JJ6 628 aa11.94□□□□□ -0.5
SRP54-207ENST00000555535 ANO8Q9HCE9 1232 aaPredicted RBP11.91□□□□□ -0.5
SRP54-207ENST00000555535 PPP1R15BQ5SWA1 713 aa11.9□□□□□ -0.5
SRP54-207ENST00000555535 ZDHHC16Q969W1 377 aa11.9□□□□□ -0.5
SRP54-207ENST00000555535 CRISPLD2Q9H0B8 497 aa11.9□□□□□ -0.5
SRP54-207ENST00000555535 PDE4AP27815 886 aa11.86□□□□□ -0.51
SRP54-207ENST00000555535 DNAJC5Q9H3Z4 198 aa11.86□□□□□ -0.51
SRP54-207ENST00000555535 ITGBL1O95965 494 aaPredicted RBP11.85□□□□□ -0.51
SRP54-207ENST00000555535 ANKK1Q8NFD2 765 aa11.85□□□□□ -0.51
SRP54-207ENST00000555535 NYAP1Q6ZVC0 841 aa11.84□□□□□ -0.51
SRP54-207ENST00000555535 EVI5O60447 810 aa11.83□□□□□ -0.52
SRP54-207ENST00000555535 RABGEF1Q9UJ41 708 aa11.83□□□□□ -0.52
SRP54-207ENST00000555535 ADAM33Q9BZ11 813 aa11.82□□□□□ -0.52
SRP54-207ENST00000555535 PPP1R3GB7ZBB8 358 aa11.81□□□□□ -0.52
SRP54-207ENST00000555535 CHGAP10645 457 aaKnown RBP11.81□□□□□ -0.52
SRP54-207ENST00000555535 LAPTM4BQ86VI4 370 aa11.8□□□□□ -0.52
SRP54-207ENST00000555535 MAP3K9P80192 1104 aa11.77□□□□□ -0.53
SRP54-207ENST00000555535 Q6ZNB5 142 aa11.75□□□□□ -0.53
SRP54-207ENST00000555535 FBXW7Q969H0 707 aa11.75□□□□□ -0.53
SRP54-207ENST00000555535 LAPTM4AQ15012 233 aa11.74□□□□□ -0.53
SRP54-207ENST00000555535 NCKAP5LQ9HCH0 1330 aa11.74□□□□□ -0.53
SRP54-207ENST00000555535 SOWAHBA6NEL2 793 aa11.73□□□□□ -0.53
SRP54-207ENST00000555535 DDX27Q96GQ7 796 aaKnown RBP11.73□□□□□ -0.53
SRP54-207ENST00000555535 ONECUT3O60422 494 aaPredicted RBP11.72□□□□□ -0.53
SRP54-207ENST00000555535 NKX1-1Q15270 411 aaPredicted RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms