RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 ZFP91Q96JP5 570 aaPredicted RBP4.4□□□□□ -1.7
PRPF39-208ENST00000554785 ECM2O94769 699 aaPredicted RBP4.39□□□□□ -1.71
PRPF39-208ENST00000554785 ZSWIM6Q9HCJ5 1215 aa4.39□□□□□ -1.71
PRPF39-208ENST00000554785 BOLA1Q9Y3E2 137 aa4.39□□□□□ -1.71
PRPF39-208ENST00000554785 HOXB1P14653 301 aaPredicted RBP4.39□□□□□ -1.71
PRPF39-208ENST00000554785 ZNF710Q8N1W2 664 aa4.39□□□□□ -1.71
PRPF39-208ENST00000554785 EFCAB3Q8N7B9 438 aa4.39□□□□□ -1.71
PRPF39-208ENST00000554785 VGFO15240 615 aaPredicted RBP4.37□□□□□ -1.71
PRPF39-208ENST00000554785 SUZ12Q15022 739 aaKnown RBP4.36□□□□□ -1.71
PRPF39-208ENST00000554785 ZNF775Q96BV0 537 aaPredicted RBP4.36□□□□□ -1.71
PRPF39-208ENST00000554785 BCL11BQ9C0K0 894 aaPredicted RBP4.36□□□□□ -1.71
PRPF39-208ENST00000554785 TRAF7Q6Q0C0 670 aa4.36□□□□□ -1.71
PRPF39-208ENST00000554785 ZNF687Q8N1G0 1237 aa4.36□□□□□ -1.71
PRPF39-208ENST00000554785 MS4A4AQ96JQ5 239 aa4.35□□□□□ -1.71
PRPF39-208ENST00000554785 PHF8Q9UPP1 1060 aa4.34□□□□□ -1.71
PRPF39-208ENST00000554785 STK25O00506 426 aa4.34□□□□□ -1.71
PRPF39-208ENST00000554785 HOXB3P14651 431 aaPredicted RBP4.34□□□□□ -1.71
PRPF39-208ENST00000554785 ANKRD13DQ6ZTN6 518 aa4.34□□□□□ -1.71
PRPF39-208ENST00000554785 STK24Q9Y6E0 443 aa4.34□□□□□ -1.71
PRPF39-208ENST00000554785 SOX12O15370 315 aa4.33□□□□□ -1.72
PRPF39-208ENST00000554785 LAPTM4AQ15012 233 aa4.32□□□□□ -1.72
PRPF39-208ENST00000554785 VARS2Q5ST30 1063 aaKnown RBP4.32□□□□□ -1.72
PRPF39-208ENST00000554785 IFFO2Q5TF58 517 aa4.32□□□□□ -1.72
PRPF39-208ENST00000554785 MFRPQ9BY79 579 aa4.32□□□□□ -1.72
PRPF39-208ENST00000554785 TAOK2Q9UL54 1235 aa4.32□□□□□ -1.72
PRPF39-208ENST00000554785 ZNF787Q6DD87 383 aa4.31□□□□□ -1.72
PRPF39-208ENST00000554785 FBXO22Q8NEZ5 403 aa4.31□□□□□ -1.72
PRPF39-208ENST00000554785 TMEM92Q6UXU6 159 aa4.3□□□□□ -1.72
PRPF39-208ENST00000554785 MICALL2Q8IY33 904 aa4.29□□□□□ -1.72
PRPF39-208ENST00000554785 LCE2BO14633 110 aa4.28□□□□□ -1.72
PRPF39-208ENST00000554785 PPP1R37O75864 691 aa4.28□□□□□ -1.72
PRPF39-208ENST00000554785 STK17AQ9UEE5 414 aa4.28□□□□□ -1.72
PRPF39-208ENST00000554785 CHGAP10645 457 aaKnown RBP4.27□□□□□ -1.73
PRPF39-208ENST00000554785 PBX2P40425 430 aa4.27□□□□□ -1.73
PRPF39-208ENST00000554785 NLRP6P59044 892 aa4.27□□□□□ -1.73
PRPF39-208ENST00000554785 NKX1-1Q15270 411 aaPredicted RBP4.27□□□□□ -1.73
PRPF39-208ENST00000554785 A0A0G2JS52 829 aa4.27□□□□□ -1.73
PRPF39-208ENST00000554785 HS6ST3Q8IZP7 471 aa4.27□□□□□ -1.73
PRPF39-208ENST00000554785 GPR153Q6NV75 609 aa4.25□□□□□ -1.73
PRPF39-208ENST00000554785 PSDA5PKW4 1024 aaPredicted RBP4.24□□□□□ -1.73
PRPF39-208ENST00000554785 ZNF316A6NFI3 1004 aaPredicted RBP4.23□□□□□ -1.73
PRPF39-208ENST00000554785 KRTAP4-8Q9BYQ9 185 aa4.23□□□□□ -1.73
PRPF39-208ENST00000554785 RTN4Q9NQC3 1192 aaKnown RBP4.23□□□□□ -1.73
PRPF39-208ENST00000554785 LSM11P83369 360 aaKnown RBP eCLIP4.22□□□□□ -1.736e-6■□□□□ 8.3
PRPF39-208ENST00000554785 KIF3CO14782 793 aa4.21□□□□□ -1.74
PRPF39-208ENST00000554785 DNAJC5Q9H3Z4 198 aa4.21□□□□□ -1.74
PRPF39-208ENST00000554785 C2orf72A6NCS6 295 aa4.21□□□□□ -1.74
PRPF39-208ENST00000554785 SLC34A2O95436 690 aa4.21□□□□□ -1.74
PRPF39-208ENST00000554785 DCAF8L2P0C7V8 631 aa4.21□□□□□ -1.74
PRPF39-208ENST00000554785 GTPBP6O43824 516 aaPredicted RBP4.19□□□□□ -1.74
PRPF39-208ENST00000554785 ARSIQ5FYB1 569 aa4.19□□□□□ -1.74
PRPF39-208ENST00000554785 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.18□□□□□ -1.74
PRPF39-208ENST00000554785 KHSRPQ92945 711 aaKnown RBP eCLIP4.18□□□□□ -1.745e-10■■■□□ 17.8
PRPF39-208ENST00000554785 TK2O00142 265 aa4.17□□□□□ -1.74
PRPF39-208ENST00000554785 KRTAP1-3Q8IUG1 177 aa4.17□□□□□ -1.74
PRPF39-208ENST00000554785 AMER1Q5JTC6 1135 aaPredicted RBP4.16□□□□□ -1.74
PRPF39-208ENST00000554785 TMC2Q8TDI7 906 aa4.15□□□□□ -1.74
PRPF39-208ENST00000554785 KCNH8Q96L42 1107 aa4.15□□□□□ -1.74
PRPF39-208ENST00000554785 ARHGAP33O14559 1287 aa4.15□□□□□ -1.75
PRPF39-208ENST00000554785 DSG2Q14126 1118 aa4.15□□□□□ -1.75
PRPF39-208ENST00000554785 TREML4Q6UXN2 200 aa4.15□□□□□ -1.75
PRPF39-208ENST00000554785 KRTAP9-2Q9BYQ4 174 aa4.15□□□□□ -1.75
PRPF39-208ENST00000554785 KRTAP9-6A0A140TA67 174 aa4.14□□□□□ -1.75
PRPF39-208ENST00000554785 GPHNQ9NQX3 736 aaPredicted RBP4.14□□□□□ -1.75
PRPF39-208ENST00000554785 PCDHGA4Q9Y5G9 962 aa4.14□□□□□ -1.75
PRPF39-208ENST00000554785 NCKAP5LQ9HCH0 1330 aa4.14□□□□□ -1.75
PRPF39-208ENST00000554785 GFRA3O60609 400 aa4.13□□□□□ -1.75
PRPF39-208ENST00000554785 STAC3Q96MF2 364 aa4.13□□□□□ -1.75
PRPF39-208ENST00000554785 TBC1D12O60347 775 aa4.13□□□□□ -1.75
PRPF39-208ENST00000554785 FOXK1P85037 733 aa4.13□□□□□ -1.75
PRPF39-208ENST00000554785 CADPS2Q86UW7 1296 aa4.13□□□□□ -1.75
PRPF39-208ENST00000554785 PLPP6Q8IY26 295 aa4.13□□□□□ -1.75
PRPF39-208ENST00000554785 CRISPLD2Q9H0B8 497 aa4.13□□□□□ -1.75
PRPF39-208ENST00000554785 NUDT7P0C024 238 aa4.12□□□□□ -1.75
PRPF39-208ENST00000554785 ADGRD1Q6QNK2 874 aa4.12□□□□□ -1.75
PRPF39-208ENST00000554785 LHX6Q9UPM6 363 aa4.12□□□□□ -1.75
PRPF39-208ENST00000554785 LCE2AQ5TA79 106 aaPredicted RBP4.11□□□□□ -1.75
PRPF39-208ENST00000554785 RYDENQ9NUL5 291 aaKnown RBP4.11□□□□□ -1.75
PRPF39-208ENST00000554785 KDM4FA0A1W2PPD8 638 aa4.1□□□□□ -1.75
PRPF39-208ENST00000554785 PPP4R3BQ5MIZ7 849 aa4.1□□□□□ -1.75
PRPF39-208ENST00000554785 PTCD2Q8WV60 388 aaKnown RBP4.1□□□□□ -1.75
PRPF39-208ENST00000554785 BBXQ8WY36 941 aaPredicted RBP4.1□□□□□ -1.75
PRPF39-208ENST00000554785 ANO8Q9HCE9 1232 aaPredicted RBP4.09□□□□□ -1.75
PRPF39-208ENST00000554785 INSM1Q01101 510 aaPredicted RBP4.09□□□□□ -1.76
PRPF39-208ENST00000554785 POTEEQ6S8J3 1075 aa4.09□□□□□ -1.76
PRPF39-208ENST00000554785 LARP6Q9BRS8 491 aaKnown RBP4.09□□□□□ -1.76
PRPF39-208ENST00000554785 HRO43593 1189 aa4.08□□□□□ -1.76
PRPF39-208ENST00000554785 PPP1R15BQ5SWA1 713 aa4.08□□□□□ -1.76
PRPF39-208ENST00000554785 UPF1Q92900 1129 aaKnown RBP eCLIP4.08□□□□□ -1.76
PRPF39-208ENST00000554785 SLC4A5Q9BY07 1137 aa4.08□□□□□ -1.76
PRPF39-208ENST00000554785 NRG2O14511 850 aaPredicted RBP4.07□□□□□ -1.76
PRPF39-208ENST00000554785 PDE4AP27815 886 aa4.07□□□□□ -1.76
PRPF39-208ENST00000554785 OXER1Q8TDS5 423 aa4.07□□□□□ -1.76
PRPF39-208ENST00000554785 MFSD10Q14728 455 aa4.06□□□□□ -1.76
PRPF39-208ENST00000554785 PAXIP1Q6ZW49 1069 aaPredicted RBP4.06□□□□□ -1.76
PRPF39-208ENST00000554785 DDX27Q96GQ7 796 aaKnown RBP4.06□□□□□ -1.76
PRPF39-208ENST00000554785 EMILIN3Q9NT22 766 aa4.06□□□□□ -1.76
PRPF39-208ENST00000554785 AXIN2Q9Y2T1 843 aa4.06□□□□□ -1.76
PRPF39-208ENST00000554785 SPRYD3Q8NCJ5 442 aa4.06□□□□□ -1.76
PRPF39-208ENST00000554785 CFAP44Q96MT7 982 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms