RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ABCC2Q92887 1545 aa38.55■■■■□ 3.76
CCDC88C-205ENST00000553403 CFDP1Q9UEE9 299 aaPredicted RBP38.52■■■■□ 3.76
CCDC88C-205ENST00000553403 ROCK1Q13464 1354 aa38.52■■■■□ 3.76
CCDC88C-205ENST00000553403 ABCC5O15440 1437 aa38.51■■■■□ 3.75
CCDC88C-205ENST00000553403 CAMSAP2Q08AD1 1489 aa38.51■■■■□ 3.75
CCDC88C-205ENST00000553403 ZNF316A6NFI3 1004 aaPredicted RBP38.49■■■■□ 3.75
CCDC88C-205ENST00000553403 CHIC2Q9UKJ5 165 aa38.46■■■■□ 3.75
CCDC88C-205ENST00000553403 ZNF644Q9H582 1327 aaPredicted RBP38.46■■■■□ 3.75
CCDC88C-205ENST00000553403 CDC42BPAQ5VT25 1732 aa38.46■■■■□ 3.75
CCDC88C-205ENST00000553403 UHRF1BP1LA0JNW5 1464 aa38.45■■■■□ 3.75
CCDC88C-205ENST00000553403 RRP7BPQ9NSQ0 103 aa38.44■■■■□ 3.74
CCDC88C-205ENST00000553403 ACIN1Q9UKV3 1341 aaKnown RBP38.41■■■■□ 3.74
CCDC88C-205ENST00000553403 TIMELESSQ9UNS1 1208 aa38.33■■■■□ 3.73
CCDC88C-205ENST00000553403 CROCC2H7BZ55 1655 aa38.31■■■■□ 3.72
CCDC88C-205ENST00000553403 KDM5BQ9UGL1 1544 aa38.29■■■■□ 3.72
CCDC88C-205ENST00000553403 ZNF777Q9ULD5 760 aaPredicted RBP38.29■■■■□ 3.72
CCDC88C-205ENST00000553403 ADGBQ8N7X0 1667 aa38.29■■■■□ 3.72
CCDC88C-205ENST00000553403 KDM6BO15054 1643 aa38.28■■■■□ 3.72
CCDC88C-205ENST00000553403 ADGRL2O95490 1459 aa38.28■■■■□ 3.72
CCDC88C-205ENST00000553403 PREX2Q70Z35 1606 aa38.26■■■■□ 3.72
CCDC88C-205ENST00000553403 ZCCHC11Q5TAX3 1644 aaKnown RBP38.25■■■■□ 3.71
CCDC88C-205ENST00000553403 NPM1P06748 294 aaKnown RBP eCLIP38.23■■■■□ 3.71
CCDC88C-205ENST00000553403 DIEXFQ68CQ4 756 aaKnown RBP38.23■■■■□ 3.71
CCDC88C-205ENST00000553403 SIN3AQ96ST3 1273 aa38.23■■■■□ 3.71
CCDC88C-205ENST00000553403 SHANK2Q9UPX8 1470 aa38.22■■■■□ 3.71
CCDC88C-205ENST00000553403 NCOA1Q15788 1441 aa38.2■■■■□ 3.71
CCDC88C-205ENST00000553403 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP38.19■■■■□ 3.7
CCDC88C-205ENST00000553403 ARHGEF5Q12774 1597 aa38.19■■■■□ 3.7
CCDC88C-205ENST00000553403 CDC42BPBQ9Y5S2 1711 aa38.19■■■■□ 3.7
CCDC88C-205ENST00000553403 NEUROD1Q13562 356 aa38.17■■■■□ 3.7
CCDC88C-205ENST00000553403 ANKRD30AQ9BXX3 1397 aa38.15■■■■□ 3.7
CCDC88C-205ENST00000553403 TTC37Q6PGP7 1564 aa38.15■■■■□ 3.7
CCDC88C-205ENST00000553403 TRIM52Q96A61 297 aa38.14■■■■□ 3.7
CCDC88C-205ENST00000553403 SAMD9LQ8IVG5 1584 aa38.11■■■■□ 3.69
CCDC88C-205ENST00000553403 DENND4BO75064 1496 aaPredicted RBP38.09■■■■□ 3.69
CCDC88C-205ENST00000553403 MBD5Q9P267 1494 aa38.09■■■■□ 3.69
CCDC88C-205ENST00000553403 MYO5CQ9NQX4 1742 aa38.08■■■■□ 3.69
CCDC88C-205ENST00000553403 RSPH4AQ5TD94 716 aa38.07■■■■□ 3.69
CCDC88C-205ENST00000553403 C9orf84Q5VXU9 1444 aa38.07■■■■□ 3.69
CCDC88C-205ENST00000553403 MPHOSPH9Q99550 1183 aa38.06■■■■□ 3.68
CCDC88C-205ENST00000553403 ARHGAP5Q13017 1502 aa38.04■■■■□ 3.68
CCDC88C-205ENST00000553403 TSPY4P0CV99 314 aa38.02■■■■□ 3.68
CCDC88C-205ENST00000553403 TSPY10P0CW01 314 aa38.02■■■■□ 3.68
CCDC88C-205ENST00000553403 CCDC141Q6ZP82 1450 aa38.02■■■■□ 3.68
CCDC88C-205ENST00000553403 PLEKHH2Q8IVE3 1493 aa38.01■■■■□ 3.68
CCDC88C-205ENST00000553403 HNRNPMP52272 730 aaKnown RBP eCLIP37.99■■■■□ 3.67
CCDC88C-205ENST00000553403 TONSLQ96HA7 1378 aa37.98■■■■□ 3.67
CCDC88C-205ENST00000553403 KCNH8Q96L42 1107 aa37.98■■■■□ 3.67
CCDC88C-205ENST00000553403 PLCH2O75038 1416 aa37.97■■■■□ 3.67
CCDC88C-205ENST00000553403 KIAA1107Q9UPP5 1409 aa37.97■■■■□ 3.67
CCDC88C-205ENST00000553403 PPP1R15AO75807 674 aaPredicted RBP37.97■■■■□ 3.67
CCDC88C-205ENST00000553403 ANKRD50Q9ULJ7 1429 aa37.94■■■■□ 3.66
CCDC88C-205ENST00000553403 MAST1Q9Y2H9 1570 aa37.92■■■■□ 3.66
CCDC88C-205ENST00000553403 SYCP2Q9BX26 1530 aa37.91■■■■□ 3.66
CCDC88C-205ENST00000553403 WDR7Q9Y4E6 1490 aa37.91■■■■□ 3.66
CCDC88C-205ENST00000553403 ARAP3Q8WWN8 1544 aa37.89■■■■□ 3.66
CCDC88C-205ENST00000553403 PZPP20742 1482 aa37.88■■■■□ 3.65
CCDC88C-205ENST00000553403 FAM69CQ0P6D2 419 aa37.87■■■■□ 3.65
CCDC88C-205ENST00000553403 KIF15Q9NS87 1388 aa37.85■■■■□ 3.65
CCDC88C-205ENST00000553403 EFCAB2Q5VUJ9 269 aa37.85■■■■□ 3.65
CCDC88C-205ENST00000553403 KIF13AQ9H1H9 1805 aa37.84■■■■□ 3.65
CCDC88C-205ENST00000553403 SLC4A1APQ9BWU0 796 aaKnown RBP37.84■■■■□ 3.65
CCDC88C-205ENST00000553403 ANKRD30BQ9BXX2 1392 aa37.83■■■■□ 3.65
CCDC88C-205ENST00000553403 KDM5DQ9BY66 1539 aa37.78■■■■□ 3.64
CCDC88C-205ENST00000553403 ABCC1P33527 1531 aa37.76■■■■□ 3.63
CCDC88C-205ENST00000553403 ABCA9Q8IUA7 1624 aa37.75■■■■□ 3.63
CCDC88C-205ENST00000553403 ARHGEF12Q9NZN5 1544 aa37.75■■■■□ 3.63
CCDC88C-205ENST00000553403 PLXNC1O60486 1568 aa37.74■■■■□ 3.63
CCDC88C-205ENST00000553403 ASXL2Q76L83 1435 aa37.72■■■■□ 3.63
CCDC88C-205ENST00000553403 RPRD2Q5VT52 1461 aaKnown RBP37.72■■■■□ 3.63
CCDC88C-205ENST00000553403 FOXD1Q16676 465 aa37.71■■■■□ 3.63
CCDC88C-205ENST00000553403 DIP2BQ9P265 1576 aa37.71■■■■□ 3.63
CCDC88C-205ENST00000553403 NUP155O75694 1391 aa37.66■■■■□ 3.62
CCDC88C-205ENST00000553403 PKD2Q13563 968 aa37.6■■■■□ 3.61
CCDC88C-205ENST00000553403 DUOX2Q9NRD8 1548 aa37.59■■■■□ 3.61
CCDC88C-205ENST00000553403 TRAPPC8Q9Y2L5 1435 aa37.58■■■■□ 3.61
CCDC88C-205ENST00000553403 FANCAO15360 1455 aa37.56■■■■□ 3.6
CCDC88C-205ENST00000553403 UNC13BO14795 1591 aa37.55■■■■□ 3.6
CCDC88C-205ENST00000553403 RTEL1-TNFRSF6BF6WH68 1400 aa37.55■■■■□ 3.6
CCDC88C-205ENST00000553403 L3MBTL2Q969R5 705 aa37.53■■■■□ 3.6
CCDC88C-205ENST00000553403 TEX14Q8IWB6 1497 aa37.53■■■■□ 3.6
CCDC88C-205ENST00000553403 MIER1Q8N108 512 aa37.53■■■■□ 3.6
CCDC88C-205ENST00000553403 ERBINQ96RT1 1412 aa37.52■■■■□ 3.6
CCDC88C-205ENST00000553403 TSPOAP1O95153 1857 aa37.51■■■■□ 3.59
CCDC88C-205ENST00000553403 FAM135AQ9P2D6 1515 aa37.48■■■■□ 3.59
CCDC88C-205ENST00000553403 SPAG9O60271 1321 aaKnown RBP37.45■■■■□ 3.59
CCDC88C-205ENST00000553403 ZFYVE16Q7Z3T8 1539 aa37.43■■■■□ 3.58
CCDC88C-205ENST00000553403 ADGRL1O94910 1474 aa37.41■■■■□ 3.58
CCDC88C-205ENST00000553403 MAGI2Q86UL8 1455 aa37.41■■■■□ 3.58
CCDC88C-205ENST00000553403 GLI2P10070 1586 aa37.4■■■■□ 3.58
CCDC88C-205ENST00000553403 IQGAP3Q86VI3 1631 aa37.4■■■■□ 3.58
CCDC88C-205ENST00000553403 SCAPERQ9BY12 1400 aa37.37■■■■□ 3.57
CCDC88C-205ENST00000553403 AFAP1Q8N556 730 aa37.37■■■■□ 3.57
CCDC88C-205ENST00000553403 INO80Q9ULG1 1556 aaPredicted RBP37.36■■■■□ 3.57
CCDC88C-205ENST00000553403 CFAP74Q9C0B2 1584 aa37.35■■■■□ 3.57
CCDC88C-205ENST00000553403 ATP7AQ04656 1500 aa37.33■■■■□ 3.57
CCDC88C-205ENST00000553403 CD109Q6YHK3 1445 aa37.32■■■■□ 3.57
CCDC88C-205ENST00000553403 NBPF8Q3BBV2 869 aa37.26■■■■□ 3.56
CCDC88C-205ENST00000553403 AEBP2Q6ZN18 517 aaPredicted RBP37.25■■■■□ 3.55
CCDC88C-205ENST00000553403 GRWD1Q9BQ67 446 aaKnown RBP eCLIP37.25■■■■□ 3.55
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms