RNA–Protein interactions for RNA: ENST00000551642.1

DEPDC4-210, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,033 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-210ENST00000551642 CHGAP10645 457 aaKnown RBP13.78□□□□□ -0.2
DEPDC4-210ENST00000551642 MICALL2Q8IY33 904 aa13.78□□□□□ -0.2
DEPDC4-210ENST00000551642 AMER1Q5JTC6 1135 aaPredicted RBP13.77□□□□□ -0.21
DEPDC4-210ENST00000551642 SNPHO15079 494 aa13.73□□□□□ -0.21
DEPDC4-210ENST00000551642 LCE2DQ5TA82 110 aaPredicted RBP13.71□□□□□ -0.21
DEPDC4-210ENST00000551642 THOC2Q8NI27 1593 aaKnown RBP13.71□□□□□ -0.22
DEPDC4-210ENST00000551642 FAM163AQ96GL9 167 aaPredicted RBP13.7□□□□□ -0.22
DEPDC4-210ENST00000551642 NKX1-1Q15270 411 aaPredicted RBP13.64□□□□□ -0.23
DEPDC4-210ENST00000551642 RYDENQ9NUL5 291 aaKnown RBP13.64□□□□□ -0.23
DEPDC4-210ENST00000551642 NESP48681 1621 aa13.64□□□□□ -0.23
DEPDC4-210ENST00000551642 TMEM92Q6UXU6 159 aa13.63□□□□□ -0.23
DEPDC4-210ENST00000551642 RTN4Q9NQC3 1192 aaKnown RBP13.62□□□□□ -0.23
DEPDC4-210ENST00000551642 POTEMA6NI47 508 aa13.61□□□□□ -0.23
DEPDC4-210ENST00000551642 ST18O60284 1047 aa13.61□□□□□ -0.23
DEPDC4-210ENST00000551642 PPP1R37O75864 691 aa13.6□□□□□ -0.23
DEPDC4-210ENST00000551642 POTEGQ6S5H5 508 aa13.6□□□□□ -0.23
DEPDC4-210ENST00000551642 DCAF1Q9Y4B6 1507 aa13.55□□□□□ -0.24
DEPDC4-210ENST00000551642 KIF3CO14782 793 aa13.54□□□□□ -0.24
DEPDC4-210ENST00000551642 HOXB3P14651 431 aaPredicted RBP13.54□□□□□ -0.24
DEPDC4-210ENST00000551642 DOK7Q18PE1 504 aa13.52□□□□□ -0.25
DEPDC4-210ENST00000551642 GTPBP6O43824 516 aaPredicted RBP13.5□□□□□ -0.25
DEPDC4-210ENST00000551642 PCDH10Q9P2E7 1040 aa13.5□□□□□ -0.25
DEPDC4-210ENST00000551642 ZCCHC6Q5VYS8 1495 aaKnown RBP13.49□□□□□ -0.25
DEPDC4-210ENST00000551642 KIF21AQ7Z4S6 1674 aa13.49□□□□□ -0.25
DEPDC4-210ENST00000551642 BAZ1AQ9NRL2 1556 aaPredicted RBP13.48□□□□□ -0.25
DEPDC4-210ENST00000551642 C2orf72A6NCS6 295 aa13.47□□□□□ -0.25
DEPDC4-210ENST00000551642 NCAPD3P42695 1498 aa13.47□□□□□ -0.25
DEPDC4-210ENST00000551642 SMARCA2P51531 1590 aa13.46□□□□□ -0.25
DEPDC4-210ENST00000551642 RIMBP2O15034 1052 aa13.45□□□□□ -0.26
DEPDC4-210ENST00000551642 ZSWIM6Q9HCJ5 1215 aa13.45□□□□□ -0.26
DEPDC4-210ENST00000551642 RIMBP3CA6NJZ7 1639 aa13.44□□□□□ -0.26
DEPDC4-210ENST00000551642 RIMBP3BA6NNM3 1639 aa13.44□□□□□ -0.26
DEPDC4-210ENST00000551642 RIMBP3Q9UFD9 1639 aa13.44□□□□□ -0.26
DEPDC4-210ENST00000551642 ZNF710Q8N1W2 664 aa13.44□□□□□ -0.26
DEPDC4-210ENST00000551642 TMC2Q8TDI7 906 aa13.44□□□□□ -0.26
DEPDC4-210ENST00000551642 BBXQ8WY36 941 aaPredicted RBP13.44□□□□□ -0.26
DEPDC4-210ENST00000551642 HOXB1P14653 301 aaPredicted RBP13.42□□□□□ -0.26
DEPDC4-210ENST00000551642 MARVELD3Q96A59 401 aa13.38□□□□□ -0.27
DEPDC4-210ENST00000551642 GPHNQ9NQX3 736 aaPredicted RBP13.38□□□□□ -0.27
DEPDC4-210ENST00000551642 SLC34A2O95436 690 aa13.37□□□□□ -0.27
DEPDC4-210ENST00000551642 EMP3P54852 163 aa13.36□□□□□ -0.27
DEPDC4-210ENST00000551642 FOXK1P85037 733 aa13.36□□□□□ -0.27
DEPDC4-210ENST00000551642 GPR153Q6NV75 609 aa13.36□□□□□ -0.27
DEPDC4-210ENST00000551642 CRISPLD2Q9H0B8 497 aa13.33□□□□□ -0.28
DEPDC4-210ENST00000551642 LAMC3Q9Y6N6 1575 aa13.32□□□□□ -0.28
DEPDC4-210ENST00000551642 ATAD2BQ9ULI0 1458 aa13.31□□□□□ -0.28
DEPDC4-210ENST00000551642 CDAN1Q8IWY9 1227 aa13.31□□□□□ -0.28
DEPDC4-210ENST00000551642 HMGXB3Q12766 1538 aa13.29□□□□□ -0.28
DEPDC4-210ENST00000551642 PDE4AP27815 886 aa13.28□□□□□ -0.28
DEPDC4-210ENST00000551642 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.28□□□□□ -0.28
DEPDC4-210ENST00000551642 DSG2Q14126 1118 aa13.27□□□□□ -0.29
DEPDC4-210ENST00000551642 PLPP6Q8IY26 295 aa13.27□□□□□ -0.29
DEPDC4-210ENST00000551642 HS3ST6Q96QI5 342 aa13.27□□□□□ -0.29
DEPDC4-210ENST00000551642 FAM205CA6NFA0 338 aa13.26□□□□□ -0.29
DEPDC4-210ENST00000551642 ARSIQ5FYB1 569 aa13.26□□□□□ -0.29
DEPDC4-210ENST00000551642 ARHGEF11O15085 1522 aa13.25□□□□□ -0.29
DEPDC4-210ENST00000551642 NCKAP5LQ9HCH0 1330 aa13.25□□□□□ -0.29
DEPDC4-210ENST00000551642 SPRYD3Q8NCJ5 442 aa13.25□□□□□ -0.29
DEPDC4-210ENST00000551642 WDR62O43379 1518 aa13.24□□□□□ -0.29
DEPDC4-210ENST00000551642 POTEB3A0JP26 581 aa13.24□□□□□ -0.29
DEPDC4-210ENST00000551642 POTEBQ6S5H4 581 aa13.24□□□□□ -0.29
DEPDC4-210ENST00000551642 PTCD2Q8WV60 388 aaKnown RBP13.24□□□□□ -0.29
DEPDC4-210ENST00000551642 PCDHGA4Q9Y5G9 962 aa13.23□□□□□ -0.29
DEPDC4-210ENST00000551642 ERBB3P21860 1342 aa13.22□□□□□ -0.29
DEPDC4-210ENST00000551642 PPP1R15BQ5SWA1 713 aa13.2□□□□□ -0.3
DEPDC4-210ENST00000551642 MRC2Q9UBG0 1479 aa13.19□□□□□ -0.3
DEPDC4-210ENST00000551642 MFSD10Q14728 455 aa13.19□□□□□ -0.3
DEPDC4-210ENST00000551642 KHSRPQ92945 711 aaKnown RBP eCLIP13.19□□□□□ -0.3
DEPDC4-210ENST00000551642 PDS5BQ9NTI5 1447 aa13.19□□□□□ -0.3
DEPDC4-210ENST00000551642 ZNF316A6NFI3 1004 aaPredicted RBP13.16□□□□□ -0.3
DEPDC4-210ENST00000551642 CADPS2Q86UW7 1296 aa13.16□□□□□ -0.3
DEPDC4-210ENST00000551642 DDX27Q96GQ7 796 aaKnown RBP13.16□□□□□ -0.3
DEPDC4-210ENST00000551642 LARP6Q9BRS8 491 aaKnown RBP13.16□□□□□ -0.3
DEPDC4-210ENST00000551642 KDM4FA0A1W2PPD8 638 aa13.15□□□□□ -0.3
DEPDC4-210ENST00000551642 TBC1D12O60347 775 aa13.15□□□□□ -0.3
DEPDC4-210ENST00000551642 NUDT7P0C024 238 aa13.15□□□□□ -0.3
DEPDC4-210ENST00000551642 VARS2Q5ST30 1063 aaKnown RBP13.15□□□□□ -0.3
DEPDC4-210ENST00000551642 CYB5RLQ6IPT4 315 aa13.14□□□□□ -0.31
DEPDC4-210ENST00000551642 PAXIP1Q6ZW49 1069 aaPredicted RBP13.13□□□□□ -0.31
DEPDC4-210ENST00000551642 ZNF687Q8N1G0 1237 aa13.13□□□□□ -0.31
DEPDC4-210ENST00000551642 OXER1Q8TDS5 423 aa13.13□□□□□ -0.31
DEPDC4-210ENST00000551642 SMARCA4P51532 1647 aa13.11□□□□□ -0.31
DEPDC4-210ENST00000551642 KRTAP3-3Q9BYR6 98 aa13.11□□□□□ -0.31
DEPDC4-210ENST00000551642 KRTAP3-2Q9BYR7 98 aa13.11□□□□□ -0.31
DEPDC4-210ENST00000551642 CFAP44Q96MT7 982 aa13.09□□□□□ -0.31
DEPDC4-210ENST00000551642 LHX6Q9UPM6 363 aa13.09□□□□□ -0.31
DEPDC4-210ENST00000551642 BAZ1BQ9UIG0 1483 aaKnown RBP13.09□□□□□ -0.31
DEPDC4-210ENST00000551642 ARAP1Q96P48 1450 aa13.08□□□□□ -0.32
DEPDC4-210ENST00000551642 PSDA5PKW4 1024 aaPredicted RBP13.07□□□□□ -0.32
DEPDC4-210ENST00000551642 PLSCR2Q9NRY7 297 aa13.07□□□□□ -0.32
DEPDC4-210ENST00000551642 UPF1Q92900 1129 aaKnown RBP eCLIP13.02□□□□□ -0.33
DEPDC4-210ENST00000551642 CAMK2BQ13554 666 aa13.01□□□□□ -0.33
DEPDC4-210ENST00000551642 SPNS2Q8IVW8 549 aa13□□□□□ -0.33
DEPDC4-210ENST00000551642 ANO8Q9HCE9 1232 aaPredicted RBP12.99□□□□□ -0.33
DEPDC4-210ENST00000551642 EMILIN3Q9NT22 766 aa12.99□□□□□ -0.33
DEPDC4-210ENST00000551642 PEG3Q9GZU2 1588 aa12.98□□□□□ -0.33
DEPDC4-210ENST00000551642 CADPSQ9ULU8 1353 aa12.98□□□□□ -0.33
DEPDC4-210ENST00000551642 PBX2P40425 430 aa12.98□□□□□ -0.33
DEPDC4-210ENST00000551642 MAP3K9P80192 1104 aa12.95□□□□□ -0.34
DEPDC4-210ENST00000551642 CEP164Q9UPV0 1460 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms