RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 RTN4Q9NQC3 1192 aaKnown RBP11.97□□□□□ -0.49
SCAF11-213ENST00000550629 DOK7Q18PE1 504 aa11.96□□□□□ -0.49
SCAF11-213ENST00000550629 HOXB3P14651 431 aaPredicted RBP11.94□□□□□ -0.5
SCAF11-213ENST00000550629 PHF8Q9UPP1 1060 aa11.94□□□□□ -0.5
SCAF11-213ENST00000550629 RIMBP2O15034 1052 aa11.92□□□□□ -0.5
SCAF11-213ENST00000550629 CCDC180Q9P1Z9 1646 aa11.92□□□□□ -0.5
SCAF11-213ENST00000550629 MS4A4AQ96JQ5 239 aa11.91□□□□□ -0.5
SCAF11-213ENST00000550629 RNF166Q96A37 237 aaPredicted RBP11.9□□□□□ -0.5
SCAF11-213ENST00000550629 CHGAP10645 457 aaKnown RBP11.89□□□□□ -0.51
SCAF11-213ENST00000550629 NLRP6P59044 892 aa11.88□□□□□ -0.51
SCAF11-213ENST00000550629 HS6ST3Q8IZP7 471 aa11.88□□□□□ -0.51
SCAF11-213ENST00000550629 DCAF8L2P0C7V8 631 aa11.87□□□□□ -0.51
SCAF11-213ENST00000550629 HOXB1P14653 301 aaPredicted RBP11.87□□□□□ -0.51
SCAF11-213ENST00000550629 TMEM92Q6UXU6 159 aa11.85□□□□□ -0.51
SCAF11-213ENST00000550629 ERBB3P21860 1342 aa11.84□□□□□ -0.51
SCAF11-213ENST00000550629 MFRPQ9BY79 579 aa11.82□□□□□ -0.52
SCAF11-213ENST00000550629 FBXO22Q8NEZ5 403 aa11.81□□□□□ -0.52
SCAF11-213ENST00000550629 ZSWIM6Q9HCJ5 1215 aa11.8□□□□□ -0.52
SCAF11-213ENST00000550629 VARS2Q5ST30 1063 aaKnown RBP11.77□□□□□ -0.53
SCAF11-213ENST00000550629 MYT1LQ9UL68 1186 aa11.77□□□□□ -0.53
SCAF11-213ENST00000550629 DNAJC5Q9H3Z4 198 aa11.76□□□□□ -0.53
SCAF11-213ENST00000550629 NKX1-1Q15270 411 aaPredicted RBP11.73□□□□□ -0.53
SCAF11-213ENST00000550629 GPR153Q6NV75 609 aa11.7□□□□□ -0.54
SCAF11-213ENST00000550629 ARSIQ5FYB1 569 aa11.68□□□□□ -0.54
SCAF11-213ENST00000550629 PPP1R37O75864 691 aa11.67□□□□□ -0.54
SCAF11-213ENST00000550629 C2orf72A6NCS6 295 aa11.65□□□□□ -0.54
SCAF11-213ENST00000550629 ZNF687Q8N1G0 1237 aa11.63□□□□□ -0.55
SCAF11-213ENST00000550629 TMC2Q8TDI7 906 aa11.63□□□□□ -0.55
SCAF11-213ENST00000550629 KIF3CO14782 793 aa11.62□□□□□ -0.55
SCAF11-213ENST00000550629 KHSRPQ92945 711 aaKnown RBP eCLIP11.61□□□□□ -0.554e-7■■■■□ 25
SCAF11-213ENST00000550629 GTPBP6O43824 516 aaPredicted RBP11.6□□□□□ -0.55
SCAF11-213ENST00000550629 ZNF316A6NFI3 1004 aaPredicted RBP11.59□□□□□ -0.55
SCAF11-213ENST00000550629 RYDENQ9NUL5 291 aaKnown RBP11.59□□□□□ -0.55
SCAF11-213ENST00000550629 BBXQ8WY36 941 aaPredicted RBP11.58□□□□□ -0.56
SCAF11-213ENST00000550629 NUDT7P0C024 238 aa11.55□□□□□ -0.56
SCAF11-213ENST00000550629 PCDHGA4Q9Y5G9 962 aa11.53□□□□□ -0.56
SCAF11-213ENST00000550629 SLC34A2O95436 690 aa11.52□□□□□ -0.57
SCAF11-213ENST00000550629 PTGER2P43116 358 aa11.52□□□□□ -0.57
SCAF11-213ENST00000550629 ANKRD13DQ6ZTN6 518 aa11.52□□□□□ -0.57
SCAF11-213ENST00000550629 LSM11P83369 360 aaKnown RBP eCLIP11.48□□□□□ -0.57
SCAF11-213ENST00000550629 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.48□□□□□ -0.57
SCAF11-213ENST00000550629 LHX6Q9UPM6 363 aa11.48□□□□□ -0.57
SCAF11-213ENST00000550629 PBX2P40425 430 aa11.47□□□□□ -0.57
SCAF11-213ENST00000550629 PLA2G2EQ9NZK7 142 aa11.46□□□□□ -0.57
SCAF11-213ENST00000550629 SPRYD3Q8NCJ5 442 aa11.44□□□□□ -0.58
SCAF11-213ENST00000550629 PSDA5PKW4 1024 aaPredicted RBP11.41□□□□□ -0.58
SCAF11-213ENST00000550629 PAXIP1Q6ZW49 1069 aaPredicted RBP11.41□□□□□ -0.58
SCAF11-213ENST00000550629 FOXK1P85037 733 aa11.4□□□□□ -0.58
SCAF11-213ENST00000550629 PLPP6Q8IY26 295 aa11.4□□□□□ -0.58
SCAF11-213ENST00000550629 CFAP44Q96MT7 982 aa11.4□□□□□ -0.58
SCAF11-213ENST00000550629 GPHNQ9NQX3 736 aaPredicted RBP11.4□□□□□ -0.58
SCAF11-213ENST00000550629 AXIN2Q9Y2T1 843 aa11.4□□□□□ -0.58
SCAF11-213ENST00000550629 ABCC9O60706 1549 aa11.4□□□□□ -0.59
SCAF11-213ENST00000550629 PTCD2Q8WV60 388 aaKnown RBP11.38□□□□□ -0.59
SCAF11-213ENST00000550629 DSG2Q14126 1118 aa11.36□□□□□ -0.59
SCAF11-213ENST00000550629 CADPS2Q86UW7 1296 aa11.36□□□□□ -0.59
SCAF11-213ENST00000550629 CRISPLD2Q9H0B8 497 aa11.36□□□□□ -0.59
SCAF11-213ENST00000550629 NCKAP5LQ9HCH0 1330 aa11.35□□□□□ -0.59
SCAF11-213ENST00000550629 TBC1D12O60347 775 aa11.34□□□□□ -0.59
SCAF11-213ENST00000550629 POTEEQ6S8J3 1075 aa11.34□□□□□ -0.59
SCAF11-213ENST00000550629 ARHGAP33O14559 1287 aa11.33□□□□□ -0.6
SCAF11-213ENST00000550629 PDE4AP27815 886 aa11.33□□□□□ -0.6
SCAF11-213ENST00000550629 PPP4R3BQ5MIZ7 849 aa11.32□□□□□ -0.6
SCAF11-213ENST00000550629 KDM4FA0A1W2PPD8 638 aa11.3□□□□□ -0.6
SCAF11-213ENST00000550629 ADGRD1Q6QNK2 874 aa11.3□□□□□ -0.6
SCAF11-213ENST00000550629 LARP6Q9BRS8 491 aaKnown RBP11.29□□□□□ -0.6
SCAF11-213ENST00000550629 ZCCHC6Q5VYS8 1495 aaKnown RBP11.27□□□□□ -0.6
SCAF11-213ENST00000550629 PPP1R15BQ5SWA1 713 aa11.27□□□□□ -0.61
SCAF11-213ENST00000550629 UPF1Q92900 1129 aaKnown RBP eCLIP11.27□□□□□ -0.618e-6■□□□□ 8.3
SCAF11-213ENST00000550629 KCNH8Q96L42 1107 aa11.27□□□□□ -0.61
SCAF11-213ENST00000550629 PSEN2P49810 448 aa11.25□□□□□ -0.61
SCAF11-213ENST00000550629 MFSD10Q14728 455 aa11.24□□□□□ -0.61
SCAF11-213ENST00000550629 DDX27Q96GQ7 796 aaKnown RBP11.24□□□□□ -0.61
SCAF11-213ENST00000550629 HCSTQ9UBK5 93 aa11.24□□□□□ -0.61
SCAF11-213ENST00000550629 TK2O00142 265 aa11.23□□□□□ -0.61
SCAF11-213ENST00000550629 OXER1Q8TDS5 423 aa11.23□□□□□ -0.61
SCAF11-213ENST00000550629 KCNK17Q96T54 332 aa11.23□□□□□ -0.61
SCAF11-213ENST00000550629 DMRTA1Q5VZB9 504 aa11.22□□□□□ -0.61
SCAF11-213ENST00000550629 DCAF1Q9Y4B6 1507 aa11.22□□□□□ -0.61
SCAF11-213ENST00000550629 MYO15BQ96JP2 1530 aa11.21□□□□□ -0.61
SCAF11-213ENST00000550629 STAC3Q96MF2 364 aa11.21□□□□□ -0.61
SCAF11-213ENST00000550629 ZNF454Q8N9F8 522 aa11.2□□□□□ -0.62
SCAF11-213ENST00000550629 TSHZ2Q9NRE2 1034 aa11.19□□□□□ -0.62
SCAF11-213ENST00000550629 NACADO15069 1562 aa11.16□□□□□ -0.62
SCAF11-213ENST00000550629 PLCB2Q00722 1185 aa11.16□□□□□ -0.62
SCAF11-213ENST00000550629 HRO43593 1189 aa11.15□□□□□ -0.62
SCAF11-213ENST00000550629 KCTD12Q96CX2 325 aaKnown RBP11.13□□□□□ -0.63
SCAF11-213ENST00000550629 BCL2L12Q9HB09 334 aa11.12□□□□□ -0.63
SCAF11-213ENST00000550629 EMILIN3Q9NT22 766 aa11.12□□□□□ -0.63
SCAF11-213ENST00000550629 RB1CC1Q8TDY2 1594 aa11.11□□□□□ -0.63
SCAF11-213ENST00000550629 EVI5O60447 810 aa11.1□□□□□ -0.63
SCAF11-213ENST00000550629 FOSBP53539 338 aa11.1□□□□□ -0.63
SCAF11-213ENST00000550629 CAMK2BQ13554 666 aa11.1□□□□□ -0.63
SCAF11-213ENST00000550629 JPH4Q96JJ6 628 aa11.1□□□□□ -0.63
SCAF11-213ENST00000550629 IRX2Q9BZI1 471 aaPredicted RBP11.1□□□□□ -0.63
SCAF11-213ENST00000550629 VPS9D1Q9Y2B5 631 aa11.1□□□□□ -0.63
SCAF11-213ENST00000550629 PTPREP23469 700 aa11.09□□□□□ -0.63
SCAF11-213ENST00000550629 WDR70Q9NW82 654 aa11.08□□□□□ -0.64
SCAF11-213ENST00000550629 MAP3K9P80192 1104 aa11.07□□□□□ -0.64
SCAF11-213ENST00000550629 ZDHHC16Q969W1 377 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms