RNA–Protein interactions for RNA: ENST00000539197.5

CCDC7-209, Transcript of coiled-coil domain containing 7, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC7, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC7-209ENST00000539197 ZNF710Q8N1W2 664 aa16.61■□□□□ 0.25
CCDC7-209ENST00000539197 CHGAP10645 457 aaKnown RBP16.59■□□□□ 0.25
CCDC7-209ENST00000539197 HS6ST3Q8IZP7 471 aa16.59■□□□□ 0.25
CCDC7-209ENST00000539197 FAM205CA6NFA0 338 aa16.58■□□□□ 0.24
CCDC7-209ENST00000539197 RIMBP2O15034 1052 aa16.55■□□□□ 0.24
CCDC7-209ENST00000539197 HS3ST6Q96QI5 342 aa16.54■□□□□ 0.24
CCDC7-209ENST00000539197 HOXB1P14653 301 aaPredicted RBP16.52■□□□□ 0.24
CCDC7-209ENST00000539197 C2orf72A6NCS6 295 aa16.5■□□□□ 0.23
CCDC7-209ENST00000539197 KIF3CO14782 793 aa16.49■□□□□ 0.23
CCDC7-209ENST00000539197 NKX1-1Q15270 411 aaPredicted RBP16.48■□□□□ 0.23
CCDC7-209ENST00000539197 ZSWIM6Q9HCJ5 1215 aa16.46■□□□□ 0.23
CCDC7-209ENST00000539197 GPR153Q6NV75 609 aa16.44■□□□□ 0.22
CCDC7-209ENST00000539197 KHSRPQ92945 711 aaKnown RBP eCLIP16.43■□□□□ 0.22
CCDC7-209ENST00000539197 KRTAP3-3Q9BYR6 98 aa16.42■□□□□ 0.22
CCDC7-209ENST00000539197 KRTAP3-2Q9BYR7 98 aa16.42■□□□□ 0.22
CCDC7-209ENST00000539197 ARSIQ5FYB1 569 aa16.41■□□□□ 0.22
CCDC7-209ENST00000539197 ERBB3P21860 1342 aa16.4■□□□□ 0.22
CCDC7-209ENST00000539197 TMC2Q8TDI7 906 aa16.36■□□□□ 0.21
CCDC7-209ENST00000539197 VARS2Q5ST30 1063 aaKnown RBP16.35■□□□□ 0.21
CCDC7-209ENST00000539197 SPNS2Q8IVW8 549 aa16.35■□□□□ 0.21
CCDC7-209ENST00000539197 DNAJC5Q9H3Z4 198 aa16.35■□□□□ 0.21
CCDC7-209ENST00000539197 DCAF8L2P0C7V8 631 aa16.32■□□□□ 0.2
CCDC7-209ENST00000539197 MMRN1Q13201 1228 aa16.26■□□□□ 0.19
CCDC7-209ENST00000539197 RYDENQ9NUL5 291 aaKnown RBP16.26■□□□□ 0.19
CCDC7-209ENST00000539197 NUDT7P0C024 238 aa16.24■□□□□ 0.19
CCDC7-209ENST00000539197 PCDHGA4Q9Y5G9 962 aa16.22■□□□□ 0.19
CCDC7-209ENST00000539197 GTPBP6O43824 516 aaPredicted RBP16.2■□□□□ 0.18
CCDC7-209ENST00000539197 SLC34A2O95436 690 aa16.2■□□□□ 0.18
CCDC7-209ENST00000539197 GPHNQ9NQX3 736 aaPredicted RBP16.2■□□□□ 0.18
CCDC7-209ENST00000539197 ZNF316A6NFI3 1004 aaPredicted RBP16.19■□□□□ 0.18
CCDC7-209ENST00000539197 DSG2Q14126 1118 aa16.19■□□□□ 0.18
CCDC7-209ENST00000539197 PLPP6Q8IY26 295 aa16.18■□□□□ 0.18
CCDC7-209ENST00000539197 FOXK1P85037 733 aa16.17■□□□□ 0.18
CCDC7-209ENST00000539197 ZNF687Q8N1G0 1237 aa16.17■□□□□ 0.18
CCDC7-209ENST00000539197 LHX6Q9UPM6 363 aa16.14■□□□□ 0.17
CCDC7-209ENST00000539197 CRISPLD2Q9H0B8 497 aa16.08■□□□□ 0.16
CCDC7-209ENST00000539197 NCKAP5LQ9HCH0 1330 aa16.08■□□□□ 0.16
CCDC7-209ENST00000539197 PTCD2Q8WV60 388 aaKnown RBP16.07■□□□□ 0.16
CCDC7-209ENST00000539197 KDM4FA0A1W2PPD8 638 aa16.05■□□□□ 0.16
CCDC7-209ENST00000539197 POTEEQ6S8J3 1075 aa16.03■□□□□ 0.16
CCDC7-209ENST00000539197 AXIN2Q9Y2T1 843 aa16.01■□□□□ 0.15
CCDC7-209ENST00000539197 PPP1R15BQ5SWA1 713 aa16■□□□□ 0.15
CCDC7-209ENST00000539197 UPF1Q92900 1129 aaKnown RBP eCLIP16■□□□□ 0.15
CCDC7-209ENST00000539197 RTN4Q9NQC3 1192 aaKnown RBP15.99■□□□□ 0.15
CCDC7-209ENST00000539197 TBC1D12O60347 775 aa15.98■□□□□ 0.15
CCDC7-209ENST00000539197 ANKRD13DQ6ZTN6 518 aa15.98■□□□□ 0.15
CCDC7-209ENST00000539197 CADPS2Q86UW7 1296 aa15.97■□□□□ 0.15
CCDC7-209ENST00000539197 PDE4AP27815 886 aa15.95■□□□□ 0.14
CCDC7-209ENST00000539197 OXER1Q8TDS5 423 aa15.95■□□□□ 0.14
CCDC7-209ENST00000539197 LARP6Q9BRS8 491 aaKnown RBP15.95■□□□□ 0.14
CCDC7-209ENST00000539197 PSDA5PKW4 1024 aaPredicted RBP15.94■□□□□ 0.14
CCDC7-209ENST00000539197 PBX2P40425 430 aa15.94■□□□□ 0.14
CCDC7-209ENST00000539197 LSM11P83369 360 aaKnown RBP eCLIP15.93■□□□□ 0.14
CCDC7-209ENST00000539197 AMER1Q5JTC6 1135 aaPredicted RBP15.9■□□□□ 0.14
CCDC7-209ENST00000539197 PTGER2P43116 358 aa15.88■□□□□ 0.13
CCDC7-209ENST00000539197 MYT1LQ9UL68 1186 aa15.88■□□□□ 0.13
CCDC7-209ENST00000539197 RNF166Q96A37 237 aaPredicted RBP15.87■□□□□ 0.13
CCDC7-209ENST00000539197 DDX27Q96GQ7 796 aaKnown RBP15.87■□□□□ 0.13
CCDC7-209ENST00000539197 BBXQ8WY36 941 aaPredicted RBP15.85■□□□□ 0.13
CCDC7-209ENST00000539197 PSEN2P49810 448 aa15.84■□□□□ 0.13
CCDC7-209ENST00000539197 MFSD10Q14728 455 aa15.84■□□□□ 0.13
CCDC7-209ENST00000539197 ARHGAP33O14559 1287 aa15.81■□□□□ 0.12
CCDC7-209ENST00000539197 PPP4R3BQ5MIZ7 849 aa15.81■□□□□ 0.12
CCDC7-209ENST00000539197 DMRTA1Q5VZB9 504 aa15.8■□□□□ 0.12
CCDC7-209ENST00000539197 EMILIN3Q9NT22 766 aa15.8■□□□□ 0.12
CCDC7-209ENST00000539197 EVI5O60447 810 aa15.75■□□□□ 0.11
CCDC7-209ENST00000539197 ZNF454Q8N9F8 522 aa15.75■□□□□ 0.11
CCDC7-209ENST00000539197 ADGRD1Q6QNK2 874 aa15.73■□□□□ 0.11
CCDC7-209ENST00000539197 KCNK17Q96T54 332 aa15.72■□□□□ 0.11
CCDC7-209ENST00000539197 ANO8Q9HCE9 1232 aaPredicted RBP15.71■□□□□ 0.11
CCDC7-209ENST00000539197 MAP3K9P80192 1104 aa15.7■□□□□ 0.1
CCDC7-209ENST00000539197 FOSBP53539 338 aa15.69■□□□□ 0.1
CCDC7-209ENST00000539197 SPRYD3Q8NCJ5 442 aa15.69■□□□□ 0.1
CCDC7-209ENST00000539197 KCNH8Q96L42 1107 aa15.69■□□□□ 0.1
CCDC7-209ENST00000539197 TK2O00142 265 aa15.66■□□□□ 0.1
CCDC7-209ENST00000539197 PAXIP1Q6ZW49 1069 aaPredicted RBP15.64■□□□□ 0.09
CCDC7-209ENST00000539197 CFAP44Q96MT7 982 aa15.64■□□□□ 0.09
CCDC7-209ENST00000539197 HRO43593 1189 aa15.63■□□□□ 0.09
CCDC7-209ENST00000539197 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.63■□□□□ 0.09
CCDC7-209ENST00000539197 JPH4Q96JJ6 628 aa15.62■□□□□ 0.09
CCDC7-209ENST00000539197 BCL2L12Q9HB09 334 aa15.62■□□□□ 0.09
CCDC7-209ENST00000539197 CAMK2BQ13554 666 aa15.61■□□□□ 0.09
CCDC7-209ENST00000539197 ADAM33Q9BZ11 813 aa15.61■□□□□ 0.09
CCDC7-209ENST00000539197 DPYSL4O14531 572 aa15.59■□□□□ 0.09
CCDC7-209ENST00000539197 ZDHHC16Q969W1 377 aa15.57■□□□□ 0.08
CCDC7-209ENST00000539197 VPS9D1Q9Y2B5 631 aa15.56■□□□□ 0.08
CCDC7-209ENST00000539197 PCDHGA10Q9Y5H3 936 aa15.56■□□□□ 0.08
CCDC7-209ENST00000539197 PTPREP23469 700 aa15.55■□□□□ 0.08
CCDC7-209ENST00000539197 STAC3Q96MF2 364 aa15.55■□□□□ 0.08
CCDC7-209ENST00000539197 ZBED2Q9BTP6 218 aa15.5■□□□□ 0.07
CCDC7-209ENST00000539197 SLC4A5Q9BY07 1137 aa15.49■□□□□ 0.07
CCDC7-209ENST00000539197 HCSTQ9UBK5 93 aa15.48■□□□□ 0.07
CCDC7-209ENST00000539197 KCTD12Q96CX2 325 aaKnown RBP15.47■□□□□ 0.07
CCDC7-209ENST00000539197 COL9A1P20849 921 aa15.46■□□□□ 0.07
CCDC7-209ENST00000539197 PHF14O94880 888 aa15.44■□□□□ 0.06
CCDC7-209ENST00000539197 DDX12PQ92771 950 aa15.44■□□□□ 0.06
CCDC7-209ENST00000539197 BHMG1C9JSJ3 638 aaPredicted RBP15.43■□□□□ 0.06
CCDC7-209ENST00000539197 TYW1BQ6NUM6 668 aa15.43■□□□□ 0.06
CCDC7-209ENST00000539197 FBXW7Q969H0 707 aa15.42■□□□□ 0.06
CCDC7-209ENST00000539197 PROX2Q3B8N5 592 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms