RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 MLECQ14165 292 aa21.12■□□□□ 0.97
CLSTN3-208ENST00000538933 ARHGEF12Q9NZN5 1544 aa21.11■□□□□ 0.97
CLSTN3-208ENST00000538933 PLEKHD1A6NEE1 506 aa21.1■□□□□ 0.97
CLSTN3-208ENST00000538933 SETD1BQ9UPS6 1966 aaKnown RBP21.06■□□□□ 0.96
CLSTN3-208ENST00000538933 SPATA31D1Q6ZQQ2 1576 aa21.06■□□□□ 0.96
CLSTN3-208ENST00000538933 CEBPAP49715 358 aaPredicted RBP21.06■□□□□ 0.96
CLSTN3-208ENST00000538933 DMRT2Q9Y5R5 561 aa21.06■□□□□ 0.96
CLSTN3-208ENST00000538933 ATP10AO60312 1499 aa21.04■□□□□ 0.96
CLSTN3-208ENST00000538933 SCAPERQ9BY12 1400 aa21.02■□□□□ 0.96
CLSTN3-208ENST00000538933 PLCH2O75038 1416 aa20.99■□□□□ 0.95
CLSTN3-208ENST00000538933 PTPRTO14522 1441 aa20.98■□□□□ 0.95
CLSTN3-208ENST00000538933 C9orf84Q5VXU9 1444 aa20.98■□□□□ 0.95
CLSTN3-208ENST00000538933 LTBP4Q8N2S1 1624 aa20.98■□□□□ 0.95
CLSTN3-208ENST00000538933 CSRNP3Q8WYN3 585 aa20.96■□□□□ 0.95
CLSTN3-208ENST00000538933 UHRF1BP1Q6BDS2 1440 aa20.95■□□□□ 0.95
CLSTN3-208ENST00000538933 RANGAP1P46060 587 aaPredicted RBP20.91■□□□□ 0.94
CLSTN3-208ENST00000538933 CDK13Q14004 1512 aaKnown RBP20.91■□□□□ 0.94
CLSTN3-208ENST00000538933 C3P01024 1663 aa20.9■□□□□ 0.94
CLSTN3-208ENST00000538933 IQSEC2Q5JU85 1478 aa20.9■□□□□ 0.94
CLSTN3-208ENST00000538933 MYO5CQ9NQX4 1742 aa20.88■□□□□ 0.93
CLSTN3-208ENST00000538933 EFCAB2Q5VUJ9 269 aa20.87■□□□□ 0.93
CLSTN3-208ENST00000538933 KDM5CP41229 1560 aa20.86■□□□□ 0.93
CLSTN3-208ENST00000538933 REREQ9P2R6 1566 aa20.85■□□□□ 0.93
CLSTN3-208ENST00000538933 AFAP1Q8N556 730 aa20.85■□□□□ 0.93
CLSTN3-208ENST00000538933 DIP2CQ9Y2E4 1556 aa20.85■□□□□ 0.93
CLSTN3-208ENST00000538933 ZNF518AQ6AHZ1 1483 aa20.84■□□□□ 0.93
CLSTN3-208ENST00000538933 NCOA1Q15788 1441 aa20.82■□□□□ 0.92
CLSTN3-208ENST00000538933 TRAPPC8Q9Y2L5 1435 aa20.81■□□□□ 0.92
CLSTN3-208ENST00000538933 KIF14Q15058 1648 aa20.79■□□□□ 0.92
CLSTN3-208ENST00000538933 ABCA6Q8N139 1617 aa20.79■□□□□ 0.92
CLSTN3-208ENST00000538933 AGLP35573 1532 aa20.78■□□□□ 0.92
CLSTN3-208ENST00000538933 MLH3Q9UHC1 1453 aa20.76■□□□□ 0.91
CLSTN3-208ENST00000538933 CDC42BPBQ9Y5S2 1711 aa20.73■□□□□ 0.91
CLSTN3-208ENST00000538933 CAMSAP1Q5T5Y3 1602 aa20.73■□□□□ 0.91
CLSTN3-208ENST00000538933 ARHGAP5Q13017 1502 aa20.73■□□□□ 0.91
CLSTN3-208ENST00000538933 ZNF335Q9H4Z2 1342 aaPredicted RBP20.7■□□□□ 0.9
CLSTN3-208ENST00000538933 EEA1Q15075 1411 aa20.7■□□□□ 0.9
CLSTN3-208ENST00000538933 UBAP1LF5GYI3 381 aa20.69■□□□□ 0.9
CLSTN3-208ENST00000538933 KIDINS220Q9ULH0 1771 aa20.69■□□□□ 0.9
CLSTN3-208ENST00000538933 TROQ12816 1431 aaPredicted RBP20.69■□□□□ 0.9
CLSTN3-208ENST00000538933 MYT1LQ9UL68 1186 aa20.68■□□□□ 0.9
CLSTN3-208ENST00000538933 NCKAP5LQ9HCH0 1330 aa20.68■□□□□ 0.9
CLSTN3-208ENST00000538933 CNTLNQ9NXG0 1405 aa20.68■□□□□ 0.9
CLSTN3-208ENST00000538933 ESF1Q9H501 851 aaKnown RBP20.67■□□□□ 0.9
CLSTN3-208ENST00000538933 CDK11AQ9UQ88 783 aaPredicted RBP20.67■□□□□ 0.9
CLSTN3-208ENST00000538933 NPATQ14207 1427 aa20.67■□□□□ 0.9
CLSTN3-208ENST00000538933 MROH2AA6NES4 1674 aa20.67■□□□□ 0.9
CLSTN3-208ENST00000538933 LRRIQ1Q96JM4 1722 aa20.67■□□□□ 0.9
CLSTN3-208ENST00000538933 ATP1B4Q9UN42 357 aaPredicted RBP20.65■□□□□ 0.9
CLSTN3-208ENST00000538933 ITSN2Q9NZM3 1697 aa20.64■□□□□ 0.9
CLSTN3-208ENST00000538933 FMN1Q68DA7 1419 aa20.64■□□□□ 0.89
CLSTN3-208ENST00000538933 ABCC1P33527 1531 aa20.63■□□□□ 0.89
CLSTN3-208ENST00000538933 ZMYM3Q14202 1370 aa20.62■□□□□ 0.89
CLSTN3-208ENST00000538933 PREX2Q70Z35 1606 aa20.61■□□□□ 0.89
CLSTN3-208ENST00000538933 CHIC1Q5VXU3 224 aa20.6■□□□□ 0.89
CLSTN3-208ENST00000538933 PLA2R1Q13018 1463 aa20.6■□□□□ 0.89
CLSTN3-208ENST00000538933 TCOF1Q13428 1488 aaKnown RBP20.6■□□□□ 0.89
CLSTN3-208ENST00000538933 ARHGAP35Q9NRY4 1499 aa20.6■□□□□ 0.89
CLSTN3-208ENST00000538933 ZNF142P52746 1687 aaPredicted RBP20.6■□□□□ 0.89
CLSTN3-208ENST00000538933 MED1Q15648 1581 aaPredicted RBP20.59■□□□□ 0.89
CLSTN3-208ENST00000538933 PKD2Q13563 968 aa20.58■□□□□ 0.89
CLSTN3-208ENST00000538933 CLIP1P30622 1438 aa20.58■□□□□ 0.88
CLSTN3-208ENST00000538933 SUPT6HQ7KZ85 1726 aaKnown RBP20.57■□□□□ 0.88
CLSTN3-208ENST00000538933 MYO3AQ8NEV4 1616 aa20.56■□□□□ 0.88
CLSTN3-208ENST00000538933 HSPA1LP34931 641 aa20.56■□□□□ 0.88
CLSTN3-208ENST00000538933 CDC42BPAQ5VT25 1732 aa20.55■□□□□ 0.88
CLSTN3-208ENST00000538933 CLTCQ00610 1675 aaKnown RBP20.54■□□□□ 0.88
CLSTN3-208ENST00000538933 SAMD9LQ8IVG5 1584 aa20.54■□□□□ 0.88
CLSTN3-208ENST00000538933 CEP170BQ9Y4F5 1589 aaPredicted RBP20.54■□□□□ 0.88
CLSTN3-208ENST00000538933 PTPRKQ15262 1439 aa20.53■□□□□ 0.88
CLSTN3-208ENST00000538933 PPP6R1Q9UPN7 881 aa20.49■□□□□ 0.87
CLSTN3-208ENST00000538933 PLXNC1O60486 1568 aa20.47■□□□□ 0.87
CLSTN3-208ENST00000538933 PIP4K2BP78356 416 aa20.45■□□□□ 0.86
CLSTN3-208ENST00000538933 DNMT1P26358 1616 aaKnown RBP20.45■□□□□ 0.86
CLSTN3-208ENST00000538933 UBTFP17480 764 aaKnown RBP20.44■□□□□ 0.86
CLSTN3-208ENST00000538933 SPAG9O60271 1321 aaKnown RBP20.44■□□□□ 0.86
CLSTN3-208ENST00000538933 ALKQ9UM73 1620 aa20.43■□□□□ 0.86
CLSTN3-208ENST00000538933 TOM1O60784 492 aa20.43■□□□□ 0.86
CLSTN3-208ENST00000538933 CPS1P31327 1500 aa20.43■□□□□ 0.86
CLSTN3-208ENST00000538933 SYCP2Q9BX26 1530 aa20.43■□□□□ 0.86
CLSTN3-208ENST00000538933 SCAF1Q9H7N4 1312 aaKnown RBP20.42■□□□□ 0.86
CLSTN3-208ENST00000538933 A2ML1A8K2U0 1454 aa20.42■□□□□ 0.86
CLSTN3-208ENST00000538933 ATP7AQ04656 1500 aa20.42■□□□□ 0.86
CLSTN3-208ENST00000538933 NEURL4Q96JN8 1562 aa20.42■□□□□ 0.86
CLSTN3-208ENST00000538933 INO80Q9ULG1 1556 aaPredicted RBP20.42■□□□□ 0.86
CLSTN3-208ENST00000538933 POLR1AO95602 1720 aaPredicted RBP20.41■□□□□ 0.86
CLSTN3-208ENST00000538933 HNRNPMP52272 730 aaKnown RBP eCLIP20.41■□□□□ 0.86
CLSTN3-208ENST00000538933 A2MP01023 1474 aa20.41■□□□□ 0.86
CLSTN3-208ENST00000538933 SHANK2Q9UPX8 1470 aa20.41■□□□□ 0.86
CLSTN3-208ENST00000538933 EHMT2Q96KQ7 1210 aa20.4■□□□□ 0.86
CLSTN3-208ENST00000538933 GPATCH8Q9UKJ3 1502 aaKnown RBP20.39■□□□□ 0.85
CLSTN3-208ENST00000538933 CCDC18Q5T9S5 1454 aa20.38■□□□□ 0.85
CLSTN3-208ENST00000538933 CASKIN1Q8WXD9 1431 aa20.38■□□□□ 0.85
CLSTN3-208ENST00000538933 GGT6Q6P531 493 aa20.38■□□□□ 0.85
CLSTN3-208ENST00000538933 ZNF777Q9ULD5 760 aaPredicted RBP20.38■□□□□ 0.85
CLSTN3-208ENST00000538933 KIAA1107Q9UPP5 1409 aa20.36■□□□□ 0.85
CLSTN3-208ENST00000538933 VWDEQ8N2E2 1590 aa20.36■□□□□ 0.85
CLSTN3-208ENST00000538933 ADGBQ8N7X0 1667 aa20.33■□□□□ 0.85
CLSTN3-208ENST00000538933 PHF23Q9BUL5 403 aaPredicted RBP20.33■□□□□ 0.85
CLSTN3-208ENST00000538933 FBXO31Q5XUX0 539 aaPredicted RBP20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms