RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 PHLDB1Q86UU1 1377 aa10.26□□□□□ -0.77
MSH6-209ENST00000538136 MYT1Q01538 1121 aa10.26□□□□□ -0.77
MSH6-209ENST00000538136 CCDC18Q5T9S5 1454 aa10.26□□□□□ -0.77
MSH6-209ENST00000538136 ARHGAP5Q13017 1502 aa10.25□□□□□ -0.77
MSH6-209ENST00000538136 POGKQ9P215 609 aa10.24□□□□□ -0.77
MSH6-209ENST00000538136 TARBP1Q13395 1621 aaKnown RBP10.22□□□□□ -0.77
MSH6-209ENST00000538136 TONSLQ96HA7 1378 aa10.22□□□□□ -0.77
MSH6-209ENST00000538136 KIF21BO75037 1637 aa10.22□□□□□ -0.77
MSH6-209ENST00000538136 ATP10BO94823 1461 aa10.21□□□□□ -0.77
MSH6-209ENST00000538136 KANK1Q14678 1352 aa10.2□□□□□ -0.78
MSH6-209ENST00000538136 PPM1GO15355 546 aaPredicted RBP10.2□□□□□ -0.78
MSH6-209ENST00000538136 TNNT2P45379 298 aaPredicted RBP10.2□□□□□ -0.78
MSH6-209ENST00000538136 NUP160Q12769 1436 aa10.2□□□□□ -0.78
MSH6-209ENST00000538136 MPHOSPH9Q99550 1183 aa10.2□□□□□ -0.78
MSH6-209ENST00000538136 CEP170Q5SW79 1584 aa10.2□□□□□ -0.78
MSH6-209ENST00000538136 EID1Q9Y6B2 187 aa10.2□□□□□ -0.78
MSH6-209ENST00000538136 ANKRD30AQ9BXX3 1397 aa10.19□□□□□ -0.78
MSH6-209ENST00000538136 PAK3O75914 559 aaPredicted RBP10.19□□□□□ -0.78
MSH6-209ENST00000538136 TMEM132EQ6IEE7 984 aa10.19□□□□□ -0.78
MSH6-209ENST00000538136 TRAK1Q9UPV9 953 aa10.18□□□□□ -0.78
MSH6-209ENST00000538136 ADAMTS12P58397 1594 aa10.18□□□□□ -0.78
MSH6-209ENST00000538136 TXNDC2Q86VQ3 553 aa10.18□□□□□ -0.78
MSH6-209ENST00000538136 KIF15Q9NS87 1388 aa10.18□□□□□ -0.78
MSH6-209ENST00000538136 EPRSP07814 1512 aaKnown RBP10.17□□□□□ -0.78
MSH6-209ENST00000538136 BIVM-ERCC5R4GMW8 1640 aa10.17□□□□□ -0.78
MSH6-209ENST00000538136 TROQ12816 1431 aaPredicted RBP10.17□□□□□ -0.78
MSH6-209ENST00000538136 NCOA2Q15596 1464 aa10.16□□□□□ -0.78
MSH6-209ENST00000538136 SALL2Q9Y467 1007 aaPredicted RBP10.16□□□□□ -0.78
MSH6-209ENST00000538136 CHD1O14646 1710 aa10.15□□□□□ -0.78
MSH6-209ENST00000538136 CASKIN1Q8WXD9 1431 aa10.15□□□□□ -0.78
MSH6-209ENST00000538136 BCL11AQ9H165 835 aa10.14□□□□□ -0.79
MSH6-209ENST00000538136 DISP1Q96F81 1524 aa10.14□□□□□ -0.79
MSH6-209ENST00000538136 ADGRL1O94910 1474 aa10.14□□□□□ -0.79
MSH6-209ENST00000538136 SRPK2P78362 688 aaKnown RBP10.13□□□□□ -0.79
MSH6-209ENST00000538136 FANCAO15360 1455 aa10.13□□□□□ -0.79
MSH6-209ENST00000538136 CARD11Q9BXL7 1154 aa10.13□□□□□ -0.79
MSH6-209ENST00000538136 XPCQ01831 940 aaPredicted RBP10.13□□□□□ -0.79
MSH6-209ENST00000538136 TSPOAP1O95153 1857 aa10.13□□□□□ -0.79
MSH6-209ENST00000538136 HRCP23327 699 aa10.12□□□□□ -0.79
MSH6-209ENST00000538136 RSPH4AQ5TD94 716 aa10.12□□□□□ -0.79
MSH6-209ENST00000538136 RAB3GAP2Q9H2M9 1393 aa10.12□□□□□ -0.79
MSH6-209ENST00000538136 CCDC9Q9Y3X0 531 aaKnown RBP10.12□□□□□ -0.79
MSH6-209ENST00000538136 NUP153P49790 1475 aaKnown RBP10.12□□□□□ -0.79
MSH6-209ENST00000538136 DDX10Q13206 875 aaKnown RBP10.11□□□□□ -0.79
MSH6-209ENST00000538136 NUTM2GQ5VZR2 741 aa10.11□□□□□ -0.79
MSH6-209ENST00000538136 AKNAQ7Z591 1439 aa10.1□□□□□ -0.79
MSH6-209ENST00000538136 LRRC9Q6ZRR7 1453 aa10.1□□□□□ -0.79
MSH6-209ENST00000538136 MINK1Q8N4C8 1332 aaPredicted RBP10.1□□□□□ -0.79
MSH6-209ENST00000538136 ABCA5Q8WWZ7 1642 aa10.09□□□□□ -0.79
MSH6-209ENST00000538136 NUTM2BA6NNL0 878 aaPredicted RBP10.09□□□□□ -0.79
MSH6-209ENST00000538136 NUTM2EB1AL46 878 aaPredicted RBP10.09□□□□□ -0.79
MSH6-209ENST00000538136 PROSER2Q86WR7 435 aaPredicted RBP10.09□□□□□ -0.79
MSH6-209ENST00000538136 NUTM2AQ8IVF1 878 aaPredicted RBP10.09□□□□□ -0.79
MSH6-209ENST00000538136 CUL7Q14999 1698 aa10.09□□□□□ -0.79
MSH6-209ENST00000538136 ABCC2Q92887 1545 aa10.08□□□□□ -0.8
MSH6-209ENST00000538136 TRAPPC8Q9Y2L5 1435 aa10.08□□□□□ -0.8
MSH6-209ENST00000538136 WDR7Q9Y4E6 1490 aa10.08□□□□□ -0.8
MSH6-209ENST00000538136 PBRM1Q86U86 1689 aa10.08□□□□□ -0.8
MSH6-209ENST00000538136 FGD6Q6ZV73 1430 aa10.08□□□□□ -0.8
MSH6-209ENST00000538136 L3MBTL2Q969R5 705 aa10.08□□□□□ -0.8
MSH6-209ENST00000538136 MYOM3Q5VTT5 1437 aa10.08□□□□□ -0.8
MSH6-209ENST00000538136 IDI1Q13907 227 aa10.07□□□□□ -0.8
MSH6-209ENST00000538136 NCKAP5LQ9HCH0 1330 aa10.07□□□□□ -0.8
MSH6-209ENST00000538136 DENND4BO75064 1496 aaPredicted RBP10.07□□□□□ -0.8
MSH6-209ENST00000538136 HDGFP51858 240 aaKnown RBP10.07□□□□□ -0.8
MSH6-209ENST00000538136 PHF23Q9BUL5 403 aaPredicted RBP10.06□□□□□ -0.8
MSH6-209ENST00000538136 PCF11O94913 1555 aaKnown RBP10.05□□□□□ -0.8
MSH6-209ENST00000538136 USP35Q9P2H5 1018 aa10.05□□□□□ -0.8
MSH6-209ENST00000538136 ANKRD50Q9ULJ7 1429 aa10.05□□□□□ -0.8
MSH6-209ENST00000538136 CFAP70Q5T0N1 1121 aa10.05□□□□□ -0.8
MSH6-209ENST00000538136 ANKLE2Q86XL3 938 aa10.04□□□□□ -0.8
MSH6-209ENST00000538136 PMFBP1Q8TBY8 1022 aa10.04□□□□□ -0.8
MSH6-209ENST00000538136 RIMBP3CA6NJZ7 1639 aa10.04□□□□□ -0.8
MSH6-209ENST00000538136 RIMBP3BA6NNM3 1639 aa10.04□□□□□ -0.8
MSH6-209ENST00000538136 RIMBP3Q9UFD9 1639 aa10.04□□□□□ -0.8
MSH6-209ENST00000538136 THEMISQ8N1K5 641 aaPredicted RBP10.04□□□□□ -0.8
MSH6-209ENST00000538136 SETD5Q9C0A6 1442 aa10.04□□□□□ -0.8
MSH6-209ENST00000538136 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.03□□□□□ -0.8
MSH6-209ENST00000538136 NGDNQ8NEJ9 315 aaKnown RBP10.03□□□□□ -0.8
MSH6-209ENST00000538136 LTV1Q96GA3 475 aaPredicted RBP10.03□□□□□ -0.8
MSH6-209ENST00000538136 C9orf84Q5VXU9 1444 aa10.03□□□□□ -0.8
MSH6-209ENST00000538136 YEATS2Q9ULM3 1422 aa10.03□□□□□ -0.8
MSH6-209ENST00000538136 ZEB1P37275 1124 aaPredicted RBP10.03□□□□□ -0.8
MSH6-209ENST00000538136 UBAP1LF5GYI3 381 aa10.02□□□□□ -0.81
MSH6-209ENST00000538136 KIAA0556O60303 1618 aa10.02□□□□□ -0.81
MSH6-209ENST00000538136 FYCO1Q9BQS8 1478 aa10.02□□□□□ -0.81
MSH6-209ENST00000538136 WAPLQ7Z5K2 1190 aa10.01□□□□□ -0.81
MSH6-209ENST00000538136 ARXQ96QS3 562 aa10□□□□□ -0.81
MSH6-209ENST00000538136 PLEKHH2Q8IVE3 1493 aa10□□□□□ -0.81
MSH6-209ENST00000538136 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10□□□□□ -0.814e-9■■□□□ 12.3
MSH6-209ENST00000538136 ATF3P18847 181 aa9.99□□□□□ -0.81
MSH6-209ENST00000538136 POGZQ7Z3K3 1410 aa9.99□□□□□ -0.81
MSH6-209ENST00000538136 GPATCH8Q9UKJ3 1502 aaKnown RBP9.99□□□□□ -0.81
MSH6-209ENST00000538136 NBPF1Q3BBV0 1214 aa9.99□□□□□ -0.81
MSH6-209ENST00000538136 ESCO1Q5FWF5 840 aa9.99□□□□□ -0.81
MSH6-209ENST00000538136 CC2D1BQ5T0F9 858 aaKnown RBP9.99□□□□□ -0.81
MSH6-209ENST00000538136 PLCH2O75038 1416 aa9.99□□□□□ -0.81
MSH6-209ENST00000538136 EFCAB5A4FU69 1503 aa9.98□□□□□ -0.81
MSH6-209ENST00000538136 UGGT2Q9NYU1 1516 aa9.98□□□□□ -0.81
MSH6-209ENST00000538136 VGFO15240 615 aaPredicted RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms