RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 ATP10AO60312 1499 aa18.58■□□□□ 0.57
CLSTN3-206ENST00000535668 ARID4BQ4LE39 1312 aaPredicted RBP18.58■□□□□ 0.57
CLSTN3-206ENST00000535668 UBTFP17480 764 aaKnown RBP18.58■□□□□ 0.56
CLSTN3-206ENST00000535668 KDM5CP41229 1560 aa18.57■□□□□ 0.56
CLSTN3-206ENST00000535668 SIGLEC1Q9BZZ2 1709 aa18.57■□□□□ 0.56
CLSTN3-206ENST00000535668 ARHGEF12Q9NZN5 1544 aa18.56■□□□□ 0.56
CLSTN3-206ENST00000535668 MYO5CQ9NQX4 1742 aa18.56■□□□□ 0.56
CLSTN3-206ENST00000535668 ZNF518AQ6AHZ1 1483 aa18.56■□□□□ 0.56
CLSTN3-206ENST00000535668 FBXO41Q8TF61 875 aa18.55■□□□□ 0.56
CLSTN3-206ENST00000535668 REREQ9P2R6 1566 aa18.55■□□□□ 0.56
CLSTN3-206ENST00000535668 KIF14Q15058 1648 aa18.54■□□□□ 0.56
CLSTN3-206ENST00000535668 C9orf84Q5VXU9 1444 aa18.54■□□□□ 0.56
CLSTN3-206ENST00000535668 CASKIN1Q8WXD9 1431 aa18.54■□□□□ 0.56
CLSTN3-206ENST00000535668 CLIP1P30622 1438 aa18.53■□□□□ 0.56
CLSTN3-206ENST00000535668 RIMS1Q86UR5 1692 aaKnown RBP18.53■□□□□ 0.56
CLSTN3-206ENST00000535668 MLH3Q9UHC1 1453 aa18.52■□□□□ 0.56
CLSTN3-206ENST00000535668 CCDC18Q5T9S5 1454 aa18.52■□□□□ 0.55
CLSTN3-206ENST00000535668 LRRIQ1Q96JM4 1722 aa18.48■□□□□ 0.55
CLSTN3-206ENST00000535668 AGLP35573 1532 aa18.47■□□□□ 0.55
CLSTN3-206ENST00000535668 SETD1BQ9UPS6 1966 aaKnown RBP18.46■□□□□ 0.55
CLSTN3-206ENST00000535668 ARHGAP5Q13017 1502 aa18.45■□□□□ 0.54
CLSTN3-206ENST00000535668 CDC42BPBQ9Y5S2 1711 aa18.45■□□□□ 0.54
CLSTN3-206ENST00000535668 FER1L4A9Z1Z3 1794 aa18.45■□□□□ 0.54
CLSTN3-206ENST00000535668 AFAP1Q8N556 730 aa18.44■□□□□ 0.54
CLSTN3-206ENST00000535668 PREX2Q70Z35 1606 aa18.44■□□□□ 0.54
CLSTN3-206ENST00000535668 FYCO1Q9BQS8 1478 aa18.44■□□□□ 0.54
CLSTN3-206ENST00000535668 ABCC1P33527 1531 aa18.43■□□□□ 0.54
CLSTN3-206ENST00000535668 DIP2CQ9Y2E4 1556 aa18.42■□□□□ 0.54
CLSTN3-206ENST00000535668 ATP1B4Q9UN42 357 aaPredicted RBP18.39■□□□□ 0.53
CLSTN3-206ENST00000535668 TRAPPC8Q9Y2L5 1435 aa18.38■□□□□ 0.53
CLSTN3-206ENST00000535668 PREX1Q8TCU6 1659 aa18.38■□□□□ 0.53
CLSTN3-206ENST00000535668 KIAA1107Q9UPP5 1409 aa18.37■□□□□ 0.53
CLSTN3-206ENST00000535668 HSPA2P54652 639 aa18.36■□□□□ 0.53
CLSTN3-206ENST00000535668 ABCA6Q8N139 1617 aa18.35■□□□□ 0.53
CLSTN3-206ENST00000535668 CDC42BPAQ5VT25 1732 aa18.35■□□□□ 0.53
CLSTN3-206ENST00000535668 ITSN2Q9NZM3 1697 aa18.34■□□□□ 0.53
CLSTN3-206ENST00000535668 GPATCH8Q9UKJ3 1502 aaKnown RBP18.34■□□□□ 0.53
CLSTN3-206ENST00000535668 CNTLNQ9NXG0 1405 aa18.34■□□□□ 0.53
CLSTN3-206ENST00000535668 MLECQ14165 292 aa18.34■□□□□ 0.53
CLSTN3-206ENST00000535668 KIDINS220Q9ULH0 1771 aa18.34■□□□□ 0.53
CLSTN3-206ENST00000535668 DMRT2Q9Y5R5 561 aa18.33■□□□□ 0.52
CLSTN3-206ENST00000535668 PLEKHH2Q8IVE3 1493 aa18.31■□□□□ 0.52
CLSTN3-206ENST00000535668 SAMD9LQ8IVG5 1584 aa18.3■□□□□ 0.52
CLSTN3-206ENST00000535668 UHRF1BP1Q6BDS2 1440 aa18.3■□□□□ 0.52
CLSTN3-206ENST00000535668 CERKQ8TCT0 537 aa18.29■□□□□ 0.52
CLSTN3-206ENST00000535668 NPATQ14207 1427 aa18.29■□□□□ 0.52
CLSTN3-206ENST00000535668 CEBPAP49715 358 aaPredicted RBP18.28■□□□□ 0.52
CLSTN3-206ENST00000535668 PTPRTO14522 1441 aa18.28■□□□□ 0.52
CLSTN3-206ENST00000535668 STRCQ7RTU9 1775 aa18.27■□□□□ 0.52
CLSTN3-206ENST00000535668 EHMT2Q96KQ7 1210 aa18.27■□□□□ 0.52
CLSTN3-206ENST00000535668 PPP6R1Q9UPN7 881 aa18.27■□□□□ 0.52
CLSTN3-206ENST00000535668 C3P01024 1663 aa18.26■□□□□ 0.51
CLSTN3-206ENST00000535668 PLXNC1O60486 1568 aa18.25■□□□□ 0.51
CLSTN3-206ENST00000535668 MROH2AA6NES4 1674 aa18.25■□□□□ 0.51
CLSTN3-206ENST00000535668 INO80Q9ULG1 1556 aaPredicted RBP18.23■□□□□ 0.51
CLSTN3-206ENST00000535668 SYCP2Q9BX26 1530 aa18.23■□□□□ 0.51
CLSTN3-206ENST00000535668 SPAG9O60271 1321 aaKnown RBP18.22■□□□□ 0.51
CLSTN3-206ENST00000535668 CFDP1Q9UEE9 299 aaPredicted RBP18.21■□□□□ 0.51
CLSTN3-206ENST00000535668 RTEL1-TNFRSF6BF6WH68 1400 aa18.21■□□□□ 0.51
CLSTN3-206ENST00000535668 MBD5Q9P267 1494 aa18.2■□□□□ 0.5
CLSTN3-206ENST00000535668 ATP7AQ04656 1500 aa18.2■□□□□ 0.5
CLSTN3-206ENST00000535668 CEP162Q5TB80 1403 aa18.2■□□□□ 0.5
CLSTN3-206ENST00000535668 CCNB3Q8WWL7 1395 aa18.19■□□□□ 0.5
CLSTN3-206ENST00000535668 NCOA1Q15788 1441 aa18.19■□□□□ 0.5
CLSTN3-206ENST00000535668 IQSEC2Q5JU85 1478 aa18.19■□□□□ 0.5
CLSTN3-206ENST00000535668 ZMYM3Q14202 1370 aa18.18■□□□□ 0.5
CLSTN3-206ENST00000535668 ESF1Q9H501 851 aaKnown RBP18.18■□□□□ 0.5
CLSTN3-206ENST00000535668 A2MP01023 1474 aa18.18■□□□□ 0.5
CLSTN3-206ENST00000535668 HNRNPMP52272 730 aaKnown RBP eCLIP18.17■□□□□ 0.5
CLSTN3-206ENST00000535668 MYT1LQ9UL68 1186 aa18.17■□□□□ 0.5
CLSTN3-206ENST00000535668 MTUS2Q5JR59 1369 aa18.17■□□□□ 0.5
CLSTN3-206ENST00000535668 PLPPR3Q6T4P5 718 aa18.16■□□□□ 0.5
CLSTN3-206ENST00000535668 EHBP1L1Q8N3D4 1523 aa18.15■□□□□ 0.5
CLSTN3-206ENST00000535668 RSPH4AQ5TD94 716 aa18.15■□□□□ 0.5
CLSTN3-206ENST00000535668 FAM135AQ9P2D6 1515 aa18.14■□□□□ 0.49
CLSTN3-206ENST00000535668 TIAM1Q13009 1591 aa18.14■□□□□ 0.49
CLSTN3-206ENST00000535668 LTBP4Q8N2S1 1624 aa18.14■□□□□ 0.49
CLSTN3-206ENST00000535668 PLA2R1Q13018 1463 aa18.14■□□□□ 0.49
CLSTN3-206ENST00000535668 PTPRKQ15262 1439 aa18.13■□□□□ 0.49
CLSTN3-206ENST00000535668 ADGBQ8N7X0 1667 aa18.12■□□□□ 0.49
CLSTN3-206ENST00000535668 ZNF777Q9ULD5 760 aaPredicted RBP18.12■□□□□ 0.49
CLSTN3-206ENST00000535668 DHX29Q7Z478 1369 aaKnown RBP18.11■□□□□ 0.49
CLSTN3-206ENST00000535668 ZNF142P52746 1687 aaPredicted RBP18.1■□□□□ 0.49
CLSTN3-206ENST00000535668 TCOF1Q13428 1488 aaKnown RBP18.09■□□□□ 0.49
CLSTN3-206ENST00000535668 PKD2Q13563 968 aa18.08■□□□□ 0.48
CLSTN3-206ENST00000535668 SUPT6HQ7KZ85 1726 aaKnown RBP18.07■□□□□ 0.48
CLSTN3-206ENST00000535668 ZNF644Q9H582 1327 aaPredicted RBP18.06■□□□□ 0.48
CLSTN3-206ENST00000535668 CAMSAP1Q5T5Y3 1602 aa18.05■□□□□ 0.48
CLSTN3-206ENST00000535668 CCDC141Q6ZP82 1450 aa18.04■□□□□ 0.48
CLSTN3-206ENST00000535668 CEP170BQ9Y4F5 1589 aaPredicted RBP18.04■□□□□ 0.48
CLSTN3-206ENST00000535668 CLTCQ00610 1675 aaKnown RBP18.03■□□□□ 0.48
CLSTN3-206ENST00000535668 NCOA2Q15596 1464 aa18.03■□□□□ 0.48
CLSTN3-206ENST00000535668 ARHGEF5Q12774 1597 aa18.03■□□□□ 0.48
CLSTN3-206ENST00000535668 MAP3K1Q13233 1512 aa18.03■□□□□ 0.48
CLSTN3-206ENST00000535668 MYO3AQ8NEV4 1616 aa18.02■□□□□ 0.48
CLSTN3-206ENST00000535668 A2ML1A8K2U0 1454 aa18.01■□□□□ 0.47
CLSTN3-206ENST00000535668 GGT6Q6P531 493 aa18■□□□□ 0.47
CLSTN3-206ENST00000535668 PZPP20742 1482 aa17.99■□□□□ 0.47
CLSTN3-206ENST00000535668 CAMSAP2Q08AD1 1489 aa17.99■□□□□ 0.47
CLSTN3-206ENST00000535668 KDM5DQ9BY66 1539 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms