RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 CFAP44Q96MT7 982 aa23.14■■□□□ 1.29
SFSWAP-203ENST00000535236 NOP58Q9Y2X3 529 aaKnown RBP23.11■■□□□ 1.29
SFSWAP-203ENST00000535236 GNL2Q13823 731 aaKnown RBP23.11■■□□□ 1.29
SFSWAP-203ENST00000535236 CARMIL1Q5VZK9 1371 aa23.11■■□□□ 1.29
SFSWAP-203ENST00000535236 NCBP3Q53F19 620 aaKnown RBP23.1■■□□□ 1.29
SFSWAP-203ENST00000535236 B4GALNT3Q6L9W6 998 aa23.1■■□□□ 1.29
SFSWAP-203ENST00000535236 NACADO15069 1562 aa23.1■■□□□ 1.29
SFSWAP-203ENST00000535236 ZNF330Q9Y3S2 320 aaPredicted RBP23.09■■□□□ 1.29
SFSWAP-203ENST00000535236 IPO8O15397 1037 aaKnown RBP23.08■■□□□ 1.29
SFSWAP-203ENST00000535236 APBB1O00213 710 aa23.07■■□□□ 1.28
SFSWAP-203ENST00000535236 CUX2O14529 1486 aa23.06■■□□□ 1.28
SFSWAP-203ENST00000535236 KIAA1211Q6ZU35 1233 aa23.06■■□□□ 1.28
SFSWAP-203ENST00000535236 CALD1Q05682 793 aaKnown RBP23.06■■□□□ 1.28
SFSWAP-203ENST00000535236 PKD2Q13563 968 aa23.05■■□□□ 1.28
SFSWAP-203ENST00000535236 KTN1Q86UP2 1357 aaKnown RBP23.05■■□□□ 1.28
SFSWAP-203ENST00000535236 CHAF1AQ13111 956 aaPredicted RBP23.04■■□□□ 1.28
SFSWAP-203ENST00000535236 TMX4Q9H1E5 349 aaPredicted RBP23.04■■□□□ 1.28
SFSWAP-203ENST00000535236 DRC7Q8IY82 874 aa23.03■■□□□ 1.28
SFSWAP-203ENST00000535236 MYO15BQ96JP2 1530 aa23.03■■□□□ 1.28
SFSWAP-203ENST00000535236 TIMELESSQ9UNS1 1208 aa23.03■■□□□ 1.28
SFSWAP-203ENST00000535236 SPRYD3Q8NCJ5 442 aa23.01■■□□□ 1.27
SFSWAP-203ENST00000535236 U2AF1L5P0DN76 240 aaPredicted RBP23.01■■□□□ 1.27
SFSWAP-203ENST00000535236 U2AF1Q01081 240 aaKnown RBP eCLIP23.01■■□□□ 1.275e-8■■■□□ 18.1
SFSWAP-203ENST00000535236 HSPA5P11021 654 aaKnown RBP23■■□□□ 1.27
SFSWAP-203ENST00000535236 CARMIL2Q6F5E8 1435 aa23■■□□□ 1.27
SFSWAP-203ENST00000535236 CCDC9Q9Y3X0 531 aaKnown RBP22.99■■□□□ 1.27
SFSWAP-203ENST00000535236 L1TD1Q5T7N2 865 aaKnown RBP22.99■■□□□ 1.27
SFSWAP-203ENST00000535236 ARHGAP35Q9NRY4 1499 aa22.97■■□□□ 1.27
SFSWAP-203ENST00000535236 CHMP4AQ9BY43 222 aa22.97■■□□□ 1.27
SFSWAP-203ENST00000535236 ITPRIPQ8IWB1 547 aa22.95■■□□□ 1.26
SFSWAP-203ENST00000535236 SETD5Q9C0A6 1442 aa22.95■■□□□ 1.26
SFSWAP-203ENST00000535236 ROCK2O75116 1388 aaKnown RBP22.95■■□□□ 1.26
SFSWAP-203ENST00000535236 MSNP26038 577 aaKnown RBP22.94■■□□□ 1.26
SFSWAP-203ENST00000535236 EFCAB2Q5VUJ9 269 aa22.94■■□□□ 1.26
SFSWAP-203ENST00000535236 GORABQ5T7V8 394 aa22.94■■□□□ 1.26
SFSWAP-203ENST00000535236 RTN4Q9NQC3 1192 aaKnown RBP22.94■■□□□ 1.26
SFSWAP-203ENST00000535236 SPAG9O60271 1321 aaKnown RBP22.94■■□□□ 1.26
SFSWAP-203ENST00000535236 STK31Q9BXU1 1019 aa22.93■■□□□ 1.26
SFSWAP-203ENST00000535236 CCER2I3L3R5 266 aa22.93■■□□□ 1.26
SFSWAP-203ENST00000535236 BAZ1AQ9NRL2 1556 aaPredicted RBP22.92■■□□□ 1.26
SFSWAP-203ENST00000535236 KIAA2012Q0VF49 1180 aa22.91■■□□□ 1.26
SFSWAP-203ENST00000535236 FOXD1Q16676 465 aa22.91■■□□□ 1.26
SFSWAP-203ENST00000535236 RWDD1Q9H446 243 aaPredicted RBP22.91■■□□□ 1.26
SFSWAP-203ENST00000535236 CHMP3Q9Y3E7 222 aa22.91■■□□□ 1.26
SFSWAP-203ENST00000535236 TAF7LQ5H9L4 462 aa22.9■■□□□ 1.26
SFSWAP-203ENST00000535236 EIF3AQ14152 1382 aaKnown RBP22.89■■□□□ 1.25
SFSWAP-203ENST00000535236 HTATSF1O43719 755 aaKnown RBP22.88■■□□□ 1.25
SFSWAP-203ENST00000535236 NUP155O75694 1391 aa22.88■■□□□ 1.25
SFSWAP-203ENST00000535236 EID1Q9Y6B2 187 aa22.88■■□□□ 1.25
SFSWAP-203ENST00000535236 RALBP1Q15311 655 aa22.87■■□□□ 1.25
SFSWAP-203ENST00000535236 GPATCH3Q96I76 525 aa22.87■■□□□ 1.25
SFSWAP-203ENST00000535236 HDAC5Q9UQL6 1122 aa22.87■■□□□ 1.25
SFSWAP-203ENST00000535236 TERF2IPQ9NYB0 399 aa22.85■■□□□ 1.25
SFSWAP-203ENST00000535236 G3V3G9 751 aa22.84■■□□□ 1.25
SFSWAP-203ENST00000535236 DCAF8Q5TAQ9 597 aa22.84■■□□□ 1.25
SFSWAP-203ENST00000535236 ANKRD30AQ9BXX3 1397 aa22.84■■□□□ 1.25
SFSWAP-203ENST00000535236 GBP4Q96PP9 640 aa22.84■■□□□ 1.25
SFSWAP-203ENST00000535236 KIF3BO15066 747 aa22.83■■□□□ 1.25
SFSWAP-203ENST00000535236 NGDNQ8NEJ9 315 aaKnown RBP22.83■■□□□ 1.25
SFSWAP-203ENST00000535236 RCAN3Q9UKA8 241 aa22.83■■□□□ 1.25
SFSWAP-203ENST00000535236 PTMSP20962 102 aa22.83■■□□□ 1.24
SFSWAP-203ENST00000535236 MPHOSPH9Q99550 1183 aa22.82■■□□□ 1.24
SFSWAP-203ENST00000535236 HMMRO75330 724 aa22.8■■□□□ 1.24
SFSWAP-203ENST00000535236 HSP90B1P14625 803 aaKnown RBP22.79■■□□□ 1.24
SFSWAP-203ENST00000535236 SMC4Q9NTJ3 1288 aa22.79■■□□□ 1.24
SFSWAP-203ENST00000535236 SOGA1O94964 1423 aa22.79■■□□□ 1.24
SFSWAP-203ENST00000535236 TRIM6-TRIM34B2RNG4 842 aa22.78■■□□□ 1.24
SFSWAP-203ENST00000535236 PMFBP1Q8TBY8 1022 aa22.78■■□□□ 1.24
SFSWAP-203ENST00000535236 AMPHP49418 695 aa22.78■■□□□ 1.24
SFSWAP-203ENST00000535236 CCDC34Q96HJ3 373 aa22.77■■□□□ 1.24
SFSWAP-203ENST00000535236 PDS5BQ9NTI5 1447 aa22.77■■□□□ 1.24
SFSWAP-203ENST00000535236 SLC4A10Q6U841 1118 aa22.76■■□□□ 1.23
SFSWAP-203ENST00000535236 TPM4P67936 248 aa22.76■■□□□ 1.23
SFSWAP-203ENST00000535236 NOC3LQ8WTT2 800 aaKnown RBP22.76■■□□□ 1.23
SFSWAP-203ENST00000535236 NUTM2DQ5VT03 806 aaPredicted RBP22.75■■□□□ 1.23
SFSWAP-203ENST00000535236 SYAP1Q96A49 352 aaPredicted RBP22.75■■□□□ 1.23
SFSWAP-203ENST00000535236 WASHC2CQ9Y4E1 1318 aa22.75■■□□□ 1.23
SFSWAP-203ENST00000535236 LMOD3Q0VAK6 560 aa22.74■■□□□ 1.23
SFSWAP-203ENST00000535236 GTF2E1P29083 439 aaPredicted RBP22.74■■□□□ 1.23
SFSWAP-203ENST00000535236 FMN1Q68DA7 1419 aa22.74■■□□□ 1.23
SFSWAP-203ENST00000535236 LTV1Q96GA3 475 aaPredicted RBP22.73■■□□□ 1.23
SFSWAP-203ENST00000535236 VPS8Q8N3P4 1428 aa22.73■■□□□ 1.23
SFSWAP-203ENST00000535236 RASSF8Q8NHQ8 419 aa22.73■■□□□ 1.23
SFSWAP-203ENST00000535236 FRAT2O75474 233 aaPredicted RBP22.71■■□□□ 1.23
SFSWAP-203ENST00000535236 MFAP1P55081 439 aaKnown RBP22.71■■□□□ 1.23
SFSWAP-203ENST00000535236 HNRNPMP52272 730 aaKnown RBP eCLIP22.71■■□□□ 1.23
SFSWAP-203ENST00000535236 KANK4Q5T7N3 995 aaPredicted RBP22.71■■□□□ 1.23
SFSWAP-203ENST00000535236 SLKQ9H2G2 1235 aaPredicted RBP22.7■■□□□ 1.22
SFSWAP-203ENST00000535236 TDRD9Q8NDG6 1382 aaKnown RBP22.7■■□□□ 1.22
SFSWAP-203ENST00000535236 TOMM22Q9NS69 142 aa22.69■■□□□ 1.22
SFSWAP-203ENST00000535236 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.68■■□□□ 1.22
SFSWAP-203ENST00000535236 TCERG1O14776 1098 aaKnown RBP22.67■■□□□ 1.22
SFSWAP-203ENST00000535236 CECR2Q9BXF3 1484 aa22.67■■□□□ 1.22
SFSWAP-203ENST00000535236 NUTM2FA1L443 756 aa22.67■■□□□ 1.22
SFSWAP-203ENST00000535236 CCDC146Q8IYE0 955 aa22.67■■□□□ 1.22
SFSWAP-203ENST00000535236 GZF1Q9H116 711 aaPredicted RBP22.67■■□□□ 1.22
SFSWAP-203ENST00000535236 PRM3Q9NNZ6 103 aa22.66■■□□□ 1.22
SFSWAP-203ENST00000535236 RAB3GAP2Q9H2M9 1393 aa22.65■■□□□ 1.22
SFSWAP-203ENST00000535236 CLUAP1Q96AJ1 413 aa22.65■■□□□ 1.22
SFSWAP-203ENST00000535236 CSPP1Q1MSJ5 1256 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms