RNA–Protein interactions for RNA: ENST00000531158.1

CHMP4A-205, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 4

Gene CHMP4A, Length 563 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-205ENST00000531158 FAM9AQ8IZU1 332 aaPredicted RBP15.57■□□□□ 0.08
CHMP4A-205ENST00000531158 ZFYVE16Q7Z3T8 1539 aa15.57■□□□□ 0.08
CHMP4A-205ENST00000531158 MYO5CQ9NQX4 1742 aa15.57■□□□□ 0.08
CHMP4A-205ENST00000531158 KIF14Q15058 1648 aa15.54■□□□□ 0.08
CHMP4A-205ENST00000531158 PLEKHD1A6NEE1 506 aa15.53■□□□□ 0.08
CHMP4A-205ENST00000531158 POGZQ7Z3K3 1410 aa15.51■□□□□ 0.07
CHMP4A-205ENST00000531158 MAGI2Q86UL8 1455 aa15.5■□□□□ 0.07
CHMP4A-205ENST00000531158 PLCH2O75038 1416 aa15.5■□□□□ 0.07
CHMP4A-205ENST00000531158 ARHGEF12Q9NZN5 1544 aa15.48■□□□□ 0.07
CHMP4A-205ENST00000531158 ARHGAP35Q9NRY4 1499 aa15.48■□□□□ 0.07
CHMP4A-205ENST00000531158 CDC42BPBQ9Y5S2 1711 aa15.48■□□□□ 0.07
CHMP4A-205ENST00000531158 PREX1Q8TCU6 1659 aa15.48■□□□□ 0.07
CHMP4A-205ENST00000531158 SCAPERQ9BY12 1400 aa15.47■□□□□ 0.07
CHMP4A-205ENST00000531158 KDM5CP41229 1560 aa15.45■□□□□ 0.06
CHMP4A-205ENST00000531158 STRCQ7RTU9 1775 aa15.44■□□□□ 0.06
CHMP4A-205ENST00000531158 DMRT2Q9Y5R5 561 aa15.43■□□□□ 0.06
CHMP4A-205ENST00000531158 ABCA6Q8N139 1617 aa15.43■□□□□ 0.06
CHMP4A-205ENST00000531158 DIP2CQ9Y2E4 1556 aa15.42■□□□□ 0.06
CHMP4A-205ENST00000531158 ATP10AO60312 1499 aa15.42■□□□□ 0.06
CHMP4A-205ENST00000531158 FMN1Q68DA7 1419 aa15.42■□□□□ 0.06
CHMP4A-205ENST00000531158 PREX2Q70Z35 1606 aa15.41■□□□□ 0.06
CHMP4A-205ENST00000531158 C9orf84Q5VXU9 1444 aa15.41■□□□□ 0.06
CHMP4A-205ENST00000531158 MLECQ14165 292 aa15.4■□□□□ 0.06
CHMP4A-205ENST00000531158 C3P01024 1663 aa15.39■□□□□ 0.05
CHMP4A-205ENST00000531158 ITSN2Q9NZM3 1697 aa15.39■□□□□ 0.05
CHMP4A-205ENST00000531158 EHMT2Q96KQ7 1210 aa15.39■□□□□ 0.05
CHMP4A-205ENST00000531158 CDC42BPAQ5VT25 1732 aa15.39■□□□□ 0.05
CHMP4A-205ENST00000531158 ARHGAP5Q13017 1502 aa15.38■□□□□ 0.05
CHMP4A-205ENST00000531158 REREQ9P2R6 1566 aa15.38■□□□□ 0.05
CHMP4A-205ENST00000531158 TROQ12816 1431 aaPredicted RBP15.38■□□□□ 0.05
CHMP4A-205ENST00000531158 ZNF518AQ6AHZ1 1483 aa15.38■□□□□ 0.05
CHMP4A-205ENST00000531158 ABCC1P33527 1531 aa15.36■□□□□ 0.05
CHMP4A-205ENST00000531158 KIDINS220Q9ULH0 1771 aa15.36■□□□□ 0.05
CHMP4A-205ENST00000531158 SETD1BQ9UPS6 1966 aaKnown RBP15.35■□□□□ 0.05
CHMP4A-205ENST00000531158 EFCAB2Q5VUJ9 269 aa15.34■□□□□ 0.05
CHMP4A-205ENST00000531158 UBTFP17480 764 aaKnown RBP15.33■□□□□ 0.04
CHMP4A-205ENST00000531158 CEBPAP49715 358 aaPredicted RBP15.33■□□□□ 0.04
CHMP4A-205ENST00000531158 AFAP1Q8N556 730 aa15.33■□□□□ 0.04
CHMP4A-205ENST00000531158 ATP1B4Q9UN42 357 aaPredicted RBP15.33■□□□□ 0.04
CHMP4A-205ENST00000531158 MLH3Q9UHC1 1453 aa15.32■□□□□ 0.04
CHMP4A-205ENST00000531158 TRAPPC8Q9Y2L5 1435 aa15.31■□□□□ 0.04
CHMP4A-205ENST00000531158 CLIP1P30622 1438 aa15.3■□□□□ 0.04
CHMP4A-205ENST00000531158 AGLP35573 1532 aa15.29■□□□□ 0.04
CHMP4A-205ENST00000531158 SAMD9LQ8IVG5 1584 aa15.28■□□□□ 0.04
CHMP4A-205ENST00000531158 CASKIN1Q8WXD9 1431 aa15.28■□□□□ 0.04
CHMP4A-205ENST00000531158 CHIC1Q5VXU3 224 aa15.28■□□□□ 0.04
CHMP4A-205ENST00000531158 CDK11AQ9UQ88 783 aaPredicted RBP15.27■□□□□ 0.04
CHMP4A-205ENST00000531158 CCDC18Q5T9S5 1454 aa15.27■□□□□ 0.03
CHMP4A-205ENST00000531158 MROH2AA6NES4 1674 aa15.25■□□□□ 0.03
CHMP4A-205ENST00000531158 SUPT6HQ7KZ85 1726 aaKnown RBP15.25■□□□□ 0.03
CHMP4A-205ENST00000531158 IQSEC2Q5JU85 1478 aa15.25■□□□□ 0.03
CHMP4A-205ENST00000531158 PTPRTO14522 1441 aa15.25■□□□□ 0.03
CHMP4A-205ENST00000531158 UHRF1BP1Q6BDS2 1440 aa15.25■□□□□ 0.03
CHMP4A-205ENST00000531158 LTBP4Q8N2S1 1624 aa15.24■□□□□ 0.03
CHMP4A-205ENST00000531158 SYCP2Q9BX26 1530 aa15.23■□□□□ 0.03
CHMP4A-205ENST00000531158 UBAP1LF5GYI3 381 aa15.23■□□□□ 0.03
CHMP4A-205ENST00000531158 FYCO1Q9BQS8 1478 aa15.22■□□□□ 0.03
CHMP4A-205ENST00000531158 INO80Q9ULG1 1556 aaPredicted RBP15.22■□□□□ 0.03
CHMP4A-205ENST00000531158 PLXNC1O60486 1568 aa15.21■□□□□ 0.03
CHMP4A-205ENST00000531158 CLTCQ00610 1675 aaKnown RBP15.21■□□□□ 0.03
CHMP4A-205ENST00000531158 GPATCH8Q9UKJ3 1502 aaKnown RBP15.19■□□□□ 0.02
CHMP4A-205ENST00000531158 ZNF142P52746 1687 aaPredicted RBP15.19■□□□□ 0.02
CHMP4A-205ENST00000531158 ATP7AQ04656 1500 aa15.17■□□□□ 0.02
CHMP4A-205ENST00000531158 MYO3AQ8NEV4 1616 aa15.17■□□□□ 0.02
CHMP4A-205ENST00000531158 NCOA1Q15788 1441 aa15.17■□□□□ 0.02
CHMP4A-205ENST00000531158 MYT1LQ9UL68 1186 aa15.16■□□□□ 0.02
CHMP4A-205ENST00000531158 CAMSAP1Q5T5Y3 1602 aa15.16■□□□□ 0.02
CHMP4A-205ENST00000531158 MED1Q15648 1581 aaPredicted RBP15.15■□□□□ 0.02
CHMP4A-205ENST00000531158 ADGBQ8N7X0 1667 aa15.14■□□□□ 0.01
CHMP4A-205ENST00000531158 PHF23Q9BUL5 403 aaPredicted RBP15.14■□□□□ 0.01
CHMP4A-205ENST00000531158 CNTLNQ9NXG0 1405 aa15.14■□□□□ 0.01
CHMP4A-205ENST00000531158 TIAM1Q13009 1591 aa15.12■□□□□ 0.01
CHMP4A-205ENST00000531158 NPATQ14207 1427 aa15.12■□□□□ 0.01
CHMP4A-205ENST00000531158 HSPA1LP34931 641 aa15.11■□□□□ 0.01
CHMP4A-205ENST00000531158 SCAF1Q9H7N4 1312 aaKnown RBP15.11■□□□□ 0.01
CHMP4A-205ENST00000531158 HNRNPMP52272 730 aaKnown RBP eCLIP15.1■□□□□ 0.01
CHMP4A-205ENST00000531158 ZNF777Q9ULD5 760 aaPredicted RBP15.1■□□□□ 0.01
CHMP4A-205ENST00000531158 CEP170BQ9Y4F5 1589 aaPredicted RBP15.1■□□□□ 0.01
CHMP4A-205ENST00000531158 KIAA1107Q9UPP5 1409 aa15.09■□□□□ 0.01
CHMP4A-205ENST00000531158 A2MP01023 1474 aa15.09■□□□□ 0.01
CHMP4A-205ENST00000531158 ZNF335Q9H4Z2 1342 aaPredicted RBP15.09■□□□□ 0.01
CHMP4A-205ENST00000531158 ZMYM3Q14202 1370 aa15.09■□□□□ 0.01
CHMP4A-205ENST00000531158 SPAG9O60271 1321 aaKnown RBP15.08■□□□□ 0
CHMP4A-205ENST00000531158 PTPRKQ15262 1439 aa15.07■□□□□ 0
CHMP4A-205ENST00000531158 PIP4K2BP78356 416 aa15.06■□□□□ 0
CHMP4A-205ENST00000531158 ESF1Q9H501 851 aaKnown RBP15.06■□□□□ 0
CHMP4A-205ENST00000531158 TCOF1Q13428 1488 aaKnown RBP15.06■□□□□ 0
CHMP4A-205ENST00000531158 PLEKHH2Q8IVE3 1493 aa15.06■□□□□ 0
CHMP4A-205ENST00000531158 MBD5Q9P267 1494 aa15.06■□□□□ 0
CHMP4A-205ENST00000531158 POLR1AO95602 1720 aaPredicted RBP15.06■□□□□ 0
CHMP4A-205ENST00000531158 DNMT1P26358 1616 aaKnown RBP15.04■□□□□ -0
CHMP4A-205ENST00000531158 EHBP1L1Q8N3D4 1523 aa15.04■□□□□ -0
CHMP4A-205ENST00000531158 PLA2R1Q13018 1463 aa15.04■□□□□ -0
CHMP4A-205ENST00000531158 ZNF644Q9H582 1327 aaPredicted RBP15.04■□□□□ -0
CHMP4A-205ENST00000531158 CCNB3Q8WWL7 1395 aa15.03■□□□□ -0
CHMP4A-205ENST00000531158 NCKAP5LQ9HCH0 1330 aa15.02■□□□□ -0
CHMP4A-205ENST00000531158 CFDP1Q9UEE9 299 aaPredicted RBP15.02■□□□□ -0
CHMP4A-205ENST00000531158 NEURL4Q96JN8 1562 aa15.02□□□□□ -0.01
CHMP4A-205ENST00000531158 MTUS2Q5JR59 1369 aa14.99□□□□□ -0.01
CHMP4A-205ENST00000531158 TOM1O60784 492 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms