RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 DAPK1P53355 1430 aa30.44■■■□□ 2.46
VPS28-209ENST00000528142 ABCC5O15440 1437 aa30.42■■■□□ 2.46
VPS28-209ENST00000528142 CHIC2Q9UKJ5 165 aa30.41■■■□□ 2.46
VPS28-209ENST00000528142 DNMT1P26358 1616 aaKnown RBP30.41■■■□□ 2.46
VPS28-209ENST00000528142 CAMSAP2Q08AD1 1489 aa30.39■■■□□ 2.46
VPS28-209ENST00000528142 RRP7BPQ9NSQ0 103 aa30.38■■■□□ 2.45
VPS28-209ENST00000528142 ROCK1Q13464 1354 aa30.37■■■□□ 2.45
VPS28-209ENST00000528142 GCC2Q8IWJ2 1684 aa30.35■■■□□ 2.45
VPS28-209ENST00000528142 CDC42BPAQ5VT25 1732 aa30.33■■■□□ 2.45
VPS28-209ENST00000528142 CYB5RLQ6IPT4 315 aa30.32■■■□□ 2.44
VPS28-209ENST00000528142 ZNF777Q9ULD5 760 aaPredicted RBP30.29■■■□□ 2.44
VPS28-209ENST00000528142 KDM6BO15054 1643 aa30.23■■■□□ 2.43
VPS28-209ENST00000528142 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.23■■■□□ 2.437e-7■■□□□ 14.3
VPS28-209ENST00000528142 TTC37Q6PGP7 1564 aa30.22■■■□□ 2.43
VPS28-209ENST00000528142 ZNF316A6NFI3 1004 aaPredicted RBP30.22■■■□□ 2.43
VPS28-209ENST00000528142 KCNH8Q96L42 1107 aa30.22■■■□□ 2.43
VPS28-209ENST00000528142 ASXL2Q76L83 1435 aa30.21■■■□□ 2.43
VPS28-209ENST00000528142 WDR7Q9Y4E6 1490 aa30.2■■■□□ 2.43
VPS28-209ENST00000528142 ADGRL2O95490 1459 aa30.19■■■□□ 2.42
VPS28-209ENST00000528142 SIN3AQ96ST3 1273 aa30.19■■■□□ 2.42
VPS28-209ENST00000528142 PREX2Q70Z35 1606 aa30.18■■■□□ 2.42
VPS28-209ENST00000528142 NCOA1Q15788 1441 aa30.17■■■□□ 2.42
VPS28-209ENST00000528142 CROCC2H7BZ55 1655 aa30.17■■■□□ 2.42
VPS28-209ENST00000528142 ACIN1Q9UKV3 1341 aaKnown RBP30.16■■■□□ 2.42
VPS28-209ENST00000528142 CDC42BPBQ9Y5S2 1711 aa30.15■■■□□ 2.42
VPS28-209ENST00000528142 SHANK2Q9UPX8 1470 aa30.13■■■□□ 2.41
VPS28-209ENST00000528142 TIMELESSQ9UNS1 1208 aa30.13■■■□□ 2.41
VPS28-209ENST00000528142 NPM1P06748 294 aaKnown RBP eCLIP30.12■■■□□ 2.41
VPS28-209ENST00000528142 MBD5Q9P267 1494 aa30.12■■■□□ 2.41
VPS28-209ENST00000528142 SAMD9LQ8IVG5 1584 aa30.11■■■□□ 2.41
VPS28-209ENST00000528142 ADGBQ8N7X0 1667 aa30.11■■■□□ 2.41
VPS28-209ENST00000528142 ARHGEF5Q12774 1597 aa30.1■■■□□ 2.41
VPS28-209ENST00000528142 DENND4BO75064 1496 aaPredicted RBP30.1■■■□□ 2.41
VPS28-209ENST00000528142 NEUROD1Q13562 356 aa30.1■■■□□ 2.41
VPS28-209ENST00000528142 ANKRD30AQ9BXX3 1397 aa30.09■■■□□ 2.41
VPS28-209ENST00000528142 TRIM52Q96A61 297 aa30.09■■■□□ 2.41
VPS28-209ENST00000528142 HNRNPMP52272 730 aaKnown RBP eCLIP30.07■■■□□ 2.4
VPS28-209ENST00000528142 C9orf84Q5VXU9 1444 aa30.06■■■□□ 2.4
VPS28-209ENST00000528142 ARHGAP5Q13017 1502 aa30.05■■■□□ 2.4
VPS28-209ENST00000528142 RSPH4AQ5TD94 716 aa30.04■■■□□ 2.4
VPS28-209ENST00000528142 MPHOSPH9Q99550 1183 aa30.04■■■□□ 2.4
VPS28-209ENST00000528142 MYO5CQ9NQX4 1742 aa30.04■■■□□ 2.4
VPS28-209ENST00000528142 PLCH2O75038 1416 aa30.03■■■□□ 2.4
VPS28-209ENST00000528142 ABCA9Q8IUA7 1624 aa30.02■■■□□ 2.4
VPS28-209ENST00000528142 TSPY4P0CV99 314 aa30.02■■■□□ 2.4
VPS28-209ENST00000528142 TSPY10P0CW01 314 aa30.02■■■□□ 2.4
VPS28-209ENST00000528142 CCDC141Q6ZP82 1450 aa30.01■■■□□ 2.39
VPS28-209ENST00000528142 DIEXFQ68CQ4 756 aaKnown RBP30.01■■■□□ 2.39
VPS28-209ENST00000528142 KIAA1107Q9UPP5 1409 aa29.99■■■□□ 2.39
VPS28-209ENST00000528142 PLEKHH2Q8IVE3 1493 aa29.97■■■□□ 2.39
VPS28-209ENST00000528142 ANKRD50Q9ULJ7 1429 aa29.96■■■□□ 2.39
VPS28-209ENST00000528142 SYCP2Q9BX26 1530 aa29.96■■■□□ 2.39
VPS28-209ENST00000528142 PPP1R15AO75807 674 aaPredicted RBP29.92■■■□□ 2.38
VPS28-209ENST00000528142 EFCAB2Q5VUJ9 269 aa29.92■■■□□ 2.38
VPS28-209ENST00000528142 ARAP3Q8WWN8 1544 aa29.9■■■□□ 2.38
VPS28-209ENST00000528142 PZPP20742 1482 aa29.9■■■□□ 2.38
VPS28-209ENST00000528142 TONSLQ96HA7 1378 aa29.89■■■□□ 2.38
VPS28-209ENST00000528142 KIF15Q9NS87 1388 aa29.89■■■□□ 2.38
VPS28-209ENST00000528142 MAST1Q9Y2H9 1570 aa29.89■■■□□ 2.38
VPS28-209ENST00000528142 ARHGEF12Q9NZN5 1544 aa29.89■■■□□ 2.38
VPS28-209ENST00000528142 SLC4A1APQ9BWU0 796 aaKnown RBP29.86■■■□□ 2.37
VPS28-209ENST00000528142 ANKRD30BQ9BXX2 1392 aa29.85■■■□□ 2.37
VPS28-209ENST00000528142 FOXD1Q16676 465 aa29.84■■■□□ 2.37
VPS28-209ENST00000528142 ABCC1P33527 1531 aa29.82■■■□□ 2.36
VPS28-209ENST00000528142 DNAJC5Q9H3Z4 198 aa29.81■■■□□ 2.36
VPS28-209ENST00000528142 CD109Q6YHK3 1445 aa29.8■■■□□ 2.36
VPS28-209ENST00000528142 DIP2BQ9P265 1576 aa29.79■■■□□ 2.36
VPS28-209ENST00000528142 FANCAO15360 1455 aa29.79■■■□□ 2.36
VPS28-209ENST00000528142 GLI2P10070 1586 aa29.78■■■□□ 2.36
VPS28-209ENST00000528142 KDM5DQ9BY66 1539 aa29.77■■■□□ 2.36
VPS28-209ENST00000528142 MAP3K4Q9Y6R4 1608 aa29.76■■■□□ 2.36
VPS28-209ENST00000528142 PLXNC1O60486 1568 aa29.75■■■□□ 2.35
VPS28-209ENST00000528142 TRAPPC8Q9Y2L5 1435 aa29.75■■■□□ 2.35
VPS28-209ENST00000528142 NUP155O75694 1391 aa29.74■■■□□ 2.35
VPS28-209ENST00000528142 RPRD2Q5VT52 1461 aaKnown RBP29.72■■■□□ 2.35
VPS28-209ENST00000528142 FAM69CQ0P6D2 419 aa29.7■■■□□ 2.34
VPS28-209ENST00000528142 PKD2Q13563 968 aa29.69■■■□□ 2.34
VPS28-209ENST00000528142 KIF13AQ9H1H9 1805 aa29.66■■■□□ 2.34
VPS28-209ENST00000528142 DUOX2Q9NRD8 1548 aa29.65■■■□□ 2.34
VPS28-209ENST00000528142 ADGRL1O94910 1474 aa29.65■■■□□ 2.34
VPS28-209ENST00000528142 RTEL1-TNFRSF6BF6WH68 1400 aa29.65■■■□□ 2.34
VPS28-209ENST00000528142 SCAPERQ9BY12 1400 aa29.64■■■□□ 2.33
VPS28-209ENST00000528142 AFAP1Q8N556 730 aa29.63■■■□□ 2.33
VPS28-209ENST00000528142 L3MBTL2Q969R5 705 aa29.63■■■□□ 2.33
VPS28-209ENST00000528142 PPRC1Q5VV67 1664 aaKnown RBP29.62■■■□□ 2.33
VPS28-209ENST00000528142 SPAG9O60271 1321 aaKnown RBP29.61■■■□□ 2.33
VPS28-209ENST00000528142 ERBINQ96RT1 1412 aa29.6■■■□□ 2.33
VPS28-209ENST00000528142 UNC13BO14795 1591 aa29.6■■■□□ 2.33
VPS28-209ENST00000528142 TEX14Q8IWB6 1497 aa29.59■■■□□ 2.33
VPS28-209ENST00000528142 CFAP74Q9C0B2 1584 aa29.59■■■□□ 2.33
VPS28-209ENST00000528142 FAM135AQ9P2D6 1515 aa29.58■■■□□ 2.33
VPS28-209ENST00000528142 ZFYVE16Q7Z3T8 1539 aa29.57■■■□□ 2.32
VPS28-209ENST00000528142 TSPOAP1O95153 1857 aa29.57■■■□□ 2.32
VPS28-209ENST00000528142 NEO1Q92859 1461 aa29.57■■■□□ 2.32
VPS28-209ENST00000528142 MAGI2Q86UL8 1455 aa29.52■■■□□ 2.32
VPS28-209ENST00000528142 MIER1Q8N108 512 aa29.52■■■□□ 2.32
VPS28-209ENST00000528142 INO80Q9ULG1 1556 aaPredicted RBP29.51■■■□□ 2.31
VPS28-209ENST00000528142 POGZQ7Z3K3 1410 aa29.49■■■□□ 2.31
VPS28-209ENST00000528142 ATP7AQ04656 1500 aa29.48■■■□□ 2.31
VPS28-209ENST00000528142 IQGAP3Q86VI3 1631 aa29.47■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms