RNA–Protein interactions for RNA: ENST00000527154.5

CHMP4A-203, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-203ENST00000527154 ILDR2Q71H61 639 aa27.7■■■□□ 2.02
CHMP4A-203ENST00000527154 PREX1Q8TCU6 1659 aa27.7■■■□□ 2.02
CHMP4A-203ENST00000527154 C9orf84Q5VXU9 1444 aa27.68■■■□□ 2.02
CHMP4A-203ENST00000527154 SOCS7O14512 581 aa27.67■■■□□ 2.02
CHMP4A-203ENST00000527154 STRCQ7RTU9 1775 aa27.66■■■□□ 2.02
CHMP4A-203ENST00000527154 MLECQ14165 292 aa27.65■■■□□ 2.02
CHMP4A-203ENST00000527154 PLPPR3Q6T4P5 718 aa27.64■■■□□ 2.02
CHMP4A-203ENST00000527154 EEA1Q15075 1411 aa27.62■■■□□ 2.01
CHMP4A-203ENST00000527154 DMRT2Q9Y5R5 561 aa27.62■■■□□ 2.01
CHMP4A-203ENST00000527154 DISP3Q9P2K9 1392 aa27.61■■■□□ 2.01
CHMP4A-203ENST00000527154 CDK13Q14004 1512 aaKnown RBP27.61■■■□□ 2.01
CHMP4A-203ENST00000527154 KDM5CP41229 1560 aa27.57■■■□□ 2
CHMP4A-203ENST00000527154 PTPRTO14522 1441 aa27.57■■■□□ 2
CHMP4A-203ENST00000527154 CEBPAP49715 358 aaPredicted RBP27.56■■■□□ 2
CHMP4A-203ENST00000527154 SETD1BQ9UPS6 1966 aaKnown RBP27.56■■■□□ 2
CHMP4A-203ENST00000527154 UHRF1BP1Q6BDS2 1440 aa27.55■■■□□ 2
CHMP4A-203ENST00000527154 REREQ9P2R6 1566 aa27.55■■■□□ 2
CHMP4A-203ENST00000527154 ZNF518AQ6AHZ1 1483 aa27.54■■■□□ 2
CHMP4A-203ENST00000527154 EFCAB2Q5VUJ9 269 aa27.53■■■□□ 2
CHMP4A-203ENST00000527154 LTBP4Q8N2S1 1624 aa27.49■■□□□ 1.99
CHMP4A-203ENST00000527154 RANGAP1P46060 587 aaPredicted RBP27.49■■□□□ 1.99
CHMP4A-203ENST00000527154 MYO5CQ9NQX4 1742 aa27.49■■□□□ 1.99
CHMP4A-203ENST00000527154 IQSEC2Q5JU85 1478 aa27.49■■□□□ 1.99
CHMP4A-203ENST00000527154 DIP2CQ9Y2E4 1556 aa27.47■■□□□ 1.99
CHMP4A-203ENST00000527154 SPATA31D1Q6ZQQ2 1576 aa27.46■■□□□ 1.99
CHMP4A-203ENST00000527154 AGLP35573 1532 aa27.45■■□□□ 1.98
CHMP4A-203ENST00000527154 MLH3Q9UHC1 1453 aa27.44■■□□□ 1.98
CHMP4A-203ENST00000527154 AFAP1Q8N556 730 aa27.43■■□□□ 1.98
CHMP4A-203ENST00000527154 KIF14Q15058 1648 aa27.41■■□□□ 1.98
CHMP4A-203ENST00000527154 C3P01024 1663 aa27.41■■□□□ 1.98
CHMP4A-203ENST00000527154 FMN1Q68DA7 1419 aa27.41■■□□□ 1.98
CHMP4A-203ENST00000527154 TROQ12816 1431 aaPredicted RBP27.4■■□□□ 1.98
CHMP4A-203ENST00000527154 TRAPPC8Q9Y2L5 1435 aa27.39■■□□□ 1.97
CHMP4A-203ENST00000527154 NCOA1Q15788 1441 aa27.38■■□□□ 1.97
CHMP4A-203ENST00000527154 ABCA6Q8N139 1617 aa27.38■■□□□ 1.97
CHMP4A-203ENST00000527154 CDK11AQ9UQ88 783 aaPredicted RBP27.36■■□□□ 1.97
CHMP4A-203ENST00000527154 ARHGAP5Q13017 1502 aa27.35■■□□□ 1.97
CHMP4A-203ENST00000527154 ARHGAP35Q9NRY4 1499 aa27.32■■□□□ 1.96
CHMP4A-203ENST00000527154 CNTLNQ9NXG0 1405 aa27.31■■□□□ 1.96
CHMP4A-203ENST00000527154 ABCC1P33527 1531 aa27.29■■□□□ 1.96
CHMP4A-203ENST00000527154 CDC42BPBQ9Y5S2 1711 aa27.29■■□□□ 1.96
CHMP4A-203ENST00000527154 NPATQ14207 1427 aa27.27■■□□□ 1.96
CHMP4A-203ENST00000527154 CLIP1P30622 1438 aa27.26■■□□□ 1.95
CHMP4A-203ENST00000527154 KIDINS220Q9ULH0 1771 aa27.23■■□□□ 1.95
CHMP4A-203ENST00000527154 PREX2Q70Z35 1606 aa27.23■■□□□ 1.95
CHMP4A-203ENST00000527154 LRRIQ1Q96JM4 1722 aa27.21■■□□□ 1.95
CHMP4A-203ENST00000527154 MROH2AA6NES4 1674 aa27.21■■□□□ 1.95
CHMP4A-203ENST00000527154 ITSN2Q9NZM3 1697 aa27.21■■□□□ 1.95
CHMP4A-203ENST00000527154 CAMSAP1Q5T5Y3 1602 aa27.19■■□□□ 1.94
CHMP4A-203ENST00000527154 PLA2R1Q13018 1463 aa27.17■■□□□ 1.94
CHMP4A-203ENST00000527154 ESF1Q9H501 851 aaKnown RBP27.16■■□□□ 1.94
CHMP4A-203ENST00000527154 ATP1B4Q9UN42 357 aaPredicted RBP27.16■■□□□ 1.94
CHMP4A-203ENST00000527154 ZMYM3Q14202 1370 aa27.14■■□□□ 1.94
CHMP4A-203ENST00000527154 MYT1LQ9UL68 1186 aa27.14■■□□□ 1.94
CHMP4A-203ENST00000527154 TCOF1Q13428 1488 aaKnown RBP27.13■■□□□ 1.93
CHMP4A-203ENST00000527154 SAMD9LQ8IVG5 1584 aa27.12■■□□□ 1.93
CHMP4A-203ENST00000527154 ZNF335Q9H4Z2 1342 aaPredicted RBP27.11■■□□□ 1.93
CHMP4A-203ENST00000527154 ZNF142P52746 1687 aaPredicted RBP27.11■■□□□ 1.93
CHMP4A-203ENST00000527154 PKD2Q13563 968 aa27.08■■□□□ 1.93
CHMP4A-203ENST00000527154 CCDC18Q5T9S5 1454 aa27.07■■□□□ 1.92
CHMP4A-203ENST00000527154 PLXNC1O60486 1568 aa27.07■■□□□ 1.92
CHMP4A-203ENST00000527154 NCKAP5LQ9HCH0 1330 aa27.07■■□□□ 1.92
CHMP4A-203ENST00000527154 CDC42BPAQ5VT25 1732 aa27.07■■□□□ 1.92
CHMP4A-203ENST00000527154 UBTFP17480 764 aaKnown RBP27.06■■□□□ 1.92
CHMP4A-203ENST00000527154 PTPRKQ15262 1439 aa27.06■■□□□ 1.92
CHMP4A-203ENST00000527154 CASKIN1Q8WXD9 1431 aa27.06■■□□□ 1.92
CHMP4A-203ENST00000527154 MYO3AQ8NEV4 1616 aa27.04■■□□□ 1.92
CHMP4A-203ENST00000527154 UBAP1LF5GYI3 381 aa27.03■■□□□ 1.92
CHMP4A-203ENST00000527154 CEP170BQ9Y4F5 1589 aaPredicted RBP27.02■■□□□ 1.92
CHMP4A-203ENST00000527154 KIAA1107Q9UPP5 1409 aa26.99■■□□□ 1.91
CHMP4A-203ENST00000527154 SYCP2Q9BX26 1530 aa26.99■■□□□ 1.91
CHMP4A-203ENST00000527154 GPATCH8Q9UKJ3 1502 aaKnown RBP26.98■■□□□ 1.91
CHMP4A-203ENST00000527154 INO80Q9ULG1 1556 aaPredicted RBP26.97■■□□□ 1.91
CHMP4A-203ENST00000527154 ATP7AQ04656 1500 aa26.96■■□□□ 1.91
CHMP4A-203ENST00000527154 SPAG9O60271 1321 aaKnown RBP26.96■■□□□ 1.91
CHMP4A-203ENST00000527154 CLTCQ00610 1675 aaKnown RBP26.95■■□□□ 1.91
CHMP4A-203ENST00000527154 PPP6R1Q9UPN7 881 aa26.95■■□□□ 1.9
CHMP4A-203ENST00000527154 A2MP01023 1474 aa26.94■■□□□ 1.9
CHMP4A-203ENST00000527154 SUPT6HQ7KZ85 1726 aaKnown RBP26.93■■□□□ 1.9
CHMP4A-203ENST00000527154 MED1Q15648 1581 aaPredicted RBP26.9■■□□□ 1.9
CHMP4A-203ENST00000527154 A2ML1A8K2U0 1454 aa26.9■■□□□ 1.9
CHMP4A-203ENST00000527154 PLEKHH2Q8IVE3 1493 aa26.9■■□□□ 1.9
CHMP4A-203ENST00000527154 FYCO1Q9BQS8 1478 aa26.89■■□□□ 1.9
CHMP4A-203ENST00000527154 HNRNPMP52272 730 aaKnown RBP eCLIP26.88■■□□□ 1.89
CHMP4A-203ENST00000527154 DNMT1P26358 1616 aaKnown RBP26.87■■□□□ 1.89
CHMP4A-203ENST00000527154 CPS1P31327 1500 aa26.86■■□□□ 1.89
CHMP4A-203ENST00000527154 EHMT2Q96KQ7 1210 aa26.85■■□□□ 1.89
CHMP4A-203ENST00000527154 NEURL4Q96JN8 1562 aa26.84■■□□□ 1.89
CHMP4A-203ENST00000527154 HSPA1LP34931 641 aa26.84■■□□□ 1.89
CHMP4A-203ENST00000527154 ZNF777Q9ULD5 760 aaPredicted RBP26.84■■□□□ 1.89
CHMP4A-203ENST00000527154 GGT6Q6P531 493 aa26.8■■□□□ 1.88
CHMP4A-203ENST00000527154 SHANK2Q9UPX8 1470 aa26.8■■□□□ 1.88
CHMP4A-203ENST00000527154 ADGBQ8N7X0 1667 aa26.79■■□□□ 1.88
CHMP4A-203ENST00000527154 ALKQ9UM73 1620 aa26.79■■□□□ 1.88
CHMP4A-203ENST00000527154 MBD5Q9P267 1494 aa26.78■■□□□ 1.88
CHMP4A-203ENST00000527154 TOM1O60784 492 aa26.77■■□□□ 1.88
CHMP4A-203ENST00000527154 CFDP1Q9UEE9 299 aaPredicted RBP26.77■■□□□ 1.88
CHMP4A-203ENST00000527154 FAM135AQ9P2D6 1515 aa26.76■■□□□ 1.87
CHMP4A-203ENST00000527154 RTEL1-TNFRSF6BF6WH68 1400 aa26.76■■□□□ 1.87
CHMP4A-203ENST00000527154 POLR1AO95602 1720 aaPredicted RBP26.76■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms