RNA–Protein interactions for RNA: ENST00000525878.5

CSDE1-210, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 626 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-210ENST00000525878 POTEBQ6S5H4 581 aa13.55□□□□□ -0.24
CSDE1-210ENST00000525878 ZNF710Q8N1W2 664 aa13.53□□□□□ -0.24
CSDE1-210ENST00000525878 HS3ST6Q96QI5 342 aa13.52□□□□□ -0.25
CSDE1-210ENST00000525878 KIF3CO14782 793 aa13.51□□□□□ -0.25
CSDE1-210ENST00000525878 FAM205CA6NFA0 338 aa13.5□□□□□ -0.25
CSDE1-210ENST00000525878 ZSWIM6Q9HCJ5 1215 aa13.5□□□□□ -0.25
CSDE1-210ENST00000525878 RIMBP2O15034 1052 aa13.49□□□□□ -0.25
CSDE1-210ENST00000525878 PPP1R37O75864 691 aa13.49□□□□□ -0.25
CSDE1-210ENST00000525878 DNAJC5Q9H3Z4 198 aa13.47□□□□□ -0.25
CSDE1-210ENST00000525878 GPR153Q6NV75 609 aa13.46□□□□□ -0.25
CSDE1-210ENST00000525878 C2orf72A6NCS6 295 aa13.44□□□□□ -0.26
CSDE1-210ENST00000525878 CHGAP10645 457 aaKnown RBP13.44□□□□□ -0.26
CSDE1-210ENST00000525878 KRTAP3-3Q9BYR6 98 aa13.43□□□□□ -0.26
CSDE1-210ENST00000525878 KRTAP3-2Q9BYR7 98 aa13.43□□□□□ -0.26
CSDE1-210ENST00000525878 NKX1-1Q15270 411 aaPredicted RBP13.39□□□□□ -0.27
CSDE1-210ENST00000525878 SPNS2Q8IVW8 549 aa13.39□□□□□ -0.27
CSDE1-210ENST00000525878 ERBB3P21860 1342 aa13.39□□□□□ -0.27
CSDE1-210ENST00000525878 ARSIQ5FYB1 569 aa13.35□□□□□ -0.27
CSDE1-210ENST00000525878 TMC2Q8TDI7 906 aa13.34□□□□□ -0.27
CSDE1-210ENST00000525878 SLC34A2O95436 690 aa13.33□□□□□ -0.28
CSDE1-210ENST00000525878 VARS2Q5ST30 1063 aaKnown RBP13.33□□□□□ -0.28
CSDE1-210ENST00000525878 MMRN1Q13201 1228 aa13.32□□□□□ -0.28
CSDE1-210ENST00000525878 KHSRPQ92945 711 aaKnown RBP eCLIP13.3□□□□□ -0.283e-7■■■□□ 18.8
CSDE1-210ENST00000525878 ZNF687Q8N1G0 1237 aa13.28□□□□□ -0.28
CSDE1-210ENST00000525878 RYDENQ9NUL5 291 aaKnown RBP13.27□□□□□ -0.29
CSDE1-210ENST00000525878 ZNF316A6NFI3 1004 aaPredicted RBP13.25□□□□□ -0.29
CSDE1-210ENST00000525878 FOXK1P85037 733 aa13.25□□□□□ -0.29
CSDE1-210ENST00000525878 GPHNQ9NQX3 736 aaPredicted RBP13.25□□□□□ -0.29
CSDE1-210ENST00000525878 PCDHGA4Q9Y5G9 962 aa13.25□□□□□ -0.29
CSDE1-210ENST00000525878 NUDT7P0C024 238 aa13.21□□□□□ -0.29
CSDE1-210ENST00000525878 GTPBP6O43824 516 aaPredicted RBP13.2□□□□□ -0.3
CSDE1-210ENST00000525878 PLPP6Q8IY26 295 aa13.19□□□□□ -0.3
CSDE1-210ENST00000525878 PTCD2Q8WV60 388 aaKnown RBP13.19□□□□□ -0.3
CSDE1-210ENST00000525878 KDM4FA0A1W2PPD8 638 aa13.18□□□□□ -0.3
CSDE1-210ENST00000525878 DSG2Q14126 1118 aa13.18□□□□□ -0.3
CSDE1-210ENST00000525878 CRISPLD2Q9H0B8 497 aa13.16□□□□□ -0.3
CSDE1-210ENST00000525878 LHX6Q9UPM6 363 aa13.16□□□□□ -0.3
CSDE1-210ENST00000525878 NCKAP5LQ9HCH0 1330 aa13.1□□□□□ -0.31
CSDE1-210ENST00000525878 DCAF8L2P0C7V8 631 aa13.09□□□□□ -0.31
CSDE1-210ENST00000525878 POTEEQ6S8J3 1075 aa13.08□□□□□ -0.32
CSDE1-210ENST00000525878 PBX2P40425 430 aa13.07□□□□□ -0.32
CSDE1-210ENST00000525878 OXER1Q8TDS5 423 aa13.05□□□□□ -0.32
CSDE1-210ENST00000525878 PSDA5PKW4 1024 aaPredicted RBP13.04□□□□□ -0.32
CSDE1-210ENST00000525878 PDE4AP27815 886 aa13.04□□□□□ -0.32
CSDE1-210ENST00000525878 LSM11P83369 360 aaKnown RBP eCLIP13.04□□□□□ -0.32
CSDE1-210ENST00000525878 PPP1R15BQ5SWA1 713 aa13.04□□□□□ -0.32
CSDE1-210ENST00000525878 TBC1D12O60347 775 aa13.03□□□□□ -0.32
CSDE1-210ENST00000525878 PTGER2P43116 358 aa13□□□□□ -0.33
CSDE1-210ENST00000525878 ANKRD13DQ6ZTN6 518 aa13□□□□□ -0.33
CSDE1-210ENST00000525878 MYT1LQ9UL68 1186 aa12.99□□□□□ -0.33
CSDE1-210ENST00000525878 MFSD10Q14728 455 aa12.98□□□□□ -0.33
CSDE1-210ENST00000525878 RNF166Q96A37 237 aaPredicted RBP12.98□□□□□ -0.33
CSDE1-210ENST00000525878 AXIN2Q9Y2T1 843 aa12.98□□□□□ -0.33
CSDE1-210ENST00000525878 ARHGAP33O14559 1287 aa12.95□□□□□ -0.34
CSDE1-210ENST00000525878 LARP6Q9BRS8 491 aaKnown RBP12.95□□□□□ -0.34
CSDE1-210ENST00000525878 AMER1Q5JTC6 1135 aaPredicted RBP12.94□□□□□ -0.34
CSDE1-210ENST00000525878 CADPS2Q86UW7 1296 aa12.94□□□□□ -0.34
CSDE1-210ENST00000525878 UPF1Q92900 1129 aaKnown RBP eCLIP12.94□□□□□ -0.34
CSDE1-210ENST00000525878 DDX27Q96GQ7 796 aaKnown RBP12.94□□□□□ -0.34
CSDE1-210ENST00000525878 BBXQ8WY36 941 aaPredicted RBP12.92□□□□□ -0.34
CSDE1-210ENST00000525878 PPP4R3BQ5MIZ7 849 aa12.91□□□□□ -0.34
CSDE1-210ENST00000525878 ANO8Q9HCE9 1232 aaPredicted RBP12.9□□□□□ -0.34
CSDE1-210ENST00000525878 RTN4Q9NQC3 1192 aaKnown RBP12.88□□□□□ -0.35
CSDE1-210ENST00000525878 TK2O00142 265 aa12.86□□□□□ -0.35
CSDE1-210ENST00000525878 PSEN2P49810 448 aa12.86□□□□□ -0.35
CSDE1-210ENST00000525878 DMRTA1Q5VZB9 504 aa12.86□□□□□ -0.35
CSDE1-210ENST00000525878 ADGRD1Q6QNK2 874 aa12.86□□□□□ -0.35
CSDE1-210ENST00000525878 EMILIN3Q9NT22 766 aa12.86□□□□□ -0.35
CSDE1-210ENST00000525878 EVI5O60447 810 aa12.83□□□□□ -0.36
CSDE1-210ENST00000525878 FOSBP53539 338 aa12.83□□□□□ -0.36
CSDE1-210ENST00000525878 HRO43593 1189 aa12.82□□□□□ -0.36
CSDE1-210ENST00000525878 ZNF454Q8N9F8 522 aa12.82□□□□□ -0.36
CSDE1-210ENST00000525878 BCL2L12Q9HB09 334 aa12.8□□□□□ -0.36
CSDE1-210ENST00000525878 CAMK2BQ13554 666 aa12.79□□□□□ -0.36
CSDE1-210ENST00000525878 JPH4Q96JJ6 628 aa12.79□□□□□ -0.36
CSDE1-210ENST00000525878 MAP3K9P80192 1104 aa12.78□□□□□ -0.36
CSDE1-210ENST00000525878 KCNK17Q96T54 332 aa12.78□□□□□ -0.36
CSDE1-210ENST00000525878 SPRYD3Q8NCJ5 442 aa12.75□□□□□ -0.37
CSDE1-210ENST00000525878 KCNH8Q96L42 1107 aa12.74□□□□□ -0.37
CSDE1-210ENST00000525878 SLC4A5Q9BY07 1137 aa12.74□□□□□ -0.37
CSDE1-210ENST00000525878 ZDHHC16Q969W1 377 aa12.73□□□□□ -0.37
CSDE1-210ENST00000525878 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.72□□□□□ -0.37
CSDE1-210ENST00000525878 VPS9D1Q9Y2B5 631 aa12.72□□□□□ -0.37
CSDE1-210ENST00000525878 ADAM33Q9BZ11 813 aa12.71□□□□□ -0.37
CSDE1-210ENST00000525878 PTPREP23469 700 aa12.7□□□□□ -0.38
CSDE1-210ENST00000525878 PCDHGA10Q9Y5H3 936 aa12.7□□□□□ -0.38
CSDE1-210ENST00000525878 ZBED2Q9BTP6 218 aa12.67□□□□□ -0.38
CSDE1-210ENST00000525878 BHMG1C9JSJ3 638 aaPredicted RBP12.65□□□□□ -0.38
CSDE1-210ENST00000525878 DPYSL4O14531 572 aa12.65□□□□□ -0.38
CSDE1-210ENST00000525878 HCSTQ9UBK5 93 aa12.65□□□□□ -0.38
CSDE1-210ENST00000525878 PHF14O94880 888 aa12.64□□□□□ -0.39
CSDE1-210ENST00000525878 PAXIP1Q6ZW49 1069 aaPredicted RBP12.62□□□□□ -0.39
CSDE1-210ENST00000525878 TYW1BQ6NUM6 668 aa12.61□□□□□ -0.39
CSDE1-210ENST00000525878 FBXW7Q969H0 707 aa12.61□□□□□ -0.39
CSDE1-210ENST00000525878 STAC3Q96MF2 364 aa12.59□□□□□ -0.39
CSDE1-210ENST00000525878 CFAP44Q96MT7 982 aa12.59□□□□□ -0.39
CSDE1-210ENST00000525878 PPP1R3GB7ZBB8 358 aa12.58□□□□□ -0.4
CSDE1-210ENST00000525878 KCTD12Q96CX2 325 aaKnown RBP12.58□□□□□ -0.4
CSDE1-210ENST00000525878 EPAS1Q99814 870 aa12.57□□□□□ -0.4
CSDE1-210ENST00000525878 COL9A1P20849 921 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms