RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 DISP3Q9P2K9 1392 aa19.65■□□□□ 0.74
SDCBP-211ENST00000523441 CEBPAP49715 358 aaPredicted RBP19.64■□□□□ 0.73
SDCBP-211ENST00000523441 CDK13Q14004 1512 aaKnown RBP19.64■□□□□ 0.73
SDCBP-211ENST00000523441 ZMYM4Q5VZL5 1548 aa19.64■□□□□ 0.73
SDCBP-211ENST00000523441 PREX1Q8TCU6 1659 aa19.62■□□□□ 0.73
SDCBP-211ENST00000523441 SCAPERQ9BY12 1400 aa19.61■□□□□ 0.73
SDCBP-211ENST00000523441 ILDR2Q71H61 639 aa19.61■□□□□ 0.73
SDCBP-211ENST00000523441 MYT1LQ9UL68 1186 aa19.61■□□□□ 0.73
SDCBP-211ENST00000523441 MAGI2Q86UL8 1455 aa19.55■□□□□ 0.72
SDCBP-211ENST00000523441 MYO5CQ9NQX4 1742 aa19.55■□□□□ 0.72
SDCBP-211ENST00000523441 STRCQ7RTU9 1775 aa19.55■□□□□ 0.72
SDCBP-211ENST00000523441 ATP10AO60312 1499 aa19.54■□□□□ 0.72
SDCBP-211ENST00000523441 ARHGEF12Q9NZN5 1544 aa19.53■□□□□ 0.72
SDCBP-211ENST00000523441 C9orf84Q5VXU9 1444 aa19.52■□□□□ 0.72
SDCBP-211ENST00000523441 PLCH2O75038 1416 aa19.51■□□□□ 0.71
SDCBP-211ENST00000523441 KIF14Q15058 1648 aa19.49■□□□□ 0.71
SDCBP-211ENST00000523441 EFCAB2Q5VUJ9 269 aa19.48■□□□□ 0.71
SDCBP-211ENST00000523441 UHRF1BP1Q6BDS2 1440 aa19.48■□□□□ 0.71
SDCBP-211ENST00000523441 SOCS7O14512 581 aa19.47■□□□□ 0.71
SDCBP-211ENST00000523441 SPATA31D1Q6ZQQ2 1576 aa19.47■□□□□ 0.71
SDCBP-211ENST00000523441 ARHGAP5Q13017 1502 aa19.46■□□□□ 0.71
SDCBP-211ENST00000523441 AFAP1Q8N556 730 aa19.46■□□□□ 0.71
SDCBP-211ENST00000523441 DMRT2Q9Y5R5 561 aa19.46■□□□□ 0.71
SDCBP-211ENST00000523441 C3P01024 1663 aa19.44■□□□□ 0.7
SDCBP-211ENST00000523441 ESF1Q9H501 851 aaKnown RBP19.43■□□□□ 0.7
SDCBP-211ENST00000523441 EEA1Q15075 1411 aa19.42■□□□□ 0.7
SDCBP-211ENST00000523441 DIP2CQ9Y2E4 1556 aa19.41■□□□□ 0.7
SDCBP-211ENST00000523441 UBTFP17480 764 aaKnown RBP19.41■□□□□ 0.7
SDCBP-211ENST00000523441 ZNF518AQ6AHZ1 1483 aa19.41■□□□□ 0.7
SDCBP-211ENST00000523441 SETD1BQ9UPS6 1966 aaKnown RBP19.4■□□□□ 0.7
SDCBP-211ENST00000523441 ABCA6Q8N139 1617 aa19.4■□□□□ 0.7
SDCBP-211ENST00000523441 LRRIQ1Q96JM4 1722 aa19.38■□□□□ 0.69
SDCBP-211ENST00000523441 CDK11AQ9UQ88 783 aaPredicted RBP19.38■□□□□ 0.69
SDCBP-211ENST00000523441 CDC42BPBQ9Y5S2 1711 aa19.37■□□□□ 0.69
SDCBP-211ENST00000523441 KDM5CP41229 1560 aa19.36■□□□□ 0.69
SDCBP-211ENST00000523441 CLIP1P30622 1438 aa19.34■□□□□ 0.69
SDCBP-211ENST00000523441 FMN1Q68DA7 1419 aa19.34■□□□□ 0.69
SDCBP-211ENST00000523441 TROQ12816 1431 aaPredicted RBP19.33■□□□□ 0.68
SDCBP-211ENST00000523441 PTPRTO14522 1441 aa19.32■□□□□ 0.68
SDCBP-211ENST00000523441 ARHGAP35Q9NRY4 1499 aa19.31■□□□□ 0.68
SDCBP-211ENST00000523441 LTBP4Q8N2S1 1624 aa19.31■□□□□ 0.68
SDCBP-211ENST00000523441 ITSN2Q9NZM3 1697 aa19.3■□□□□ 0.68
SDCBP-211ENST00000523441 TRAPPC8Q9Y2L5 1435 aa19.3■□□□□ 0.68
SDCBP-211ENST00000523441 CAMSAP1Q5T5Y3 1602 aa19.28■□□□□ 0.68
SDCBP-211ENST00000523441 PREX2Q70Z35 1606 aa19.28■□□□□ 0.68
SDCBP-211ENST00000523441 SUPT6HQ7KZ85 1726 aaKnown RBP19.28■□□□□ 0.68
SDCBP-211ENST00000523441 REREQ9P2R6 1566 aa19.27■□□□□ 0.68
SDCBP-211ENST00000523441 ZNF777Q9ULD5 760 aaPredicted RBP19.27■□□□□ 0.68
SDCBP-211ENST00000523441 KIDINS220Q9ULH0 1771 aa19.27■□□□□ 0.67
SDCBP-211ENST00000523441 NCKAP5LQ9HCH0 1330 aa19.26■□□□□ 0.67
SDCBP-211ENST00000523441 ABCC1P33527 1531 aa19.26■□□□□ 0.67
SDCBP-211ENST00000523441 NCOA1Q15788 1441 aa19.25■□□□□ 0.67
SDCBP-211ENST00000523441 MLH3Q9UHC1 1453 aa19.25■□□□□ 0.67
SDCBP-211ENST00000523441 UBAP1LF5GYI3 381 aa19.25■□□□□ 0.67
SDCBP-211ENST00000523441 CDC42BPAQ5VT25 1732 aa19.23■□□□□ 0.67
SDCBP-211ENST00000523441 ZNF335Q9H4Z2 1342 aaPredicted RBP19.23■□□□□ 0.67
SDCBP-211ENST00000523441 AGLP35573 1532 aa19.22■□□□□ 0.67
SDCBP-211ENST00000523441 CLTCQ00610 1675 aaKnown RBP19.22■□□□□ 0.67
SDCBP-211ENST00000523441 SCAF1Q9H7N4 1312 aaKnown RBP19.21■□□□□ 0.67
SDCBP-211ENST00000523441 CNTLNQ9NXG0 1405 aa19.19■□□□□ 0.66
SDCBP-211ENST00000523441 MROH2AA6NES4 1674 aa19.18■□□□□ 0.66
SDCBP-211ENST00000523441 IQSEC2Q5JU85 1478 aa19.17■□□□□ 0.66
SDCBP-211ENST00000523441 SAMD9LQ8IVG5 1584 aa19.17■□□□□ 0.66
SDCBP-211ENST00000523441 ZMYM3Q14202 1370 aa19.17■□□□□ 0.66
SDCBP-211ENST00000523441 MYO3AQ8NEV4 1616 aa19.16■□□□□ 0.66
SDCBP-211ENST00000523441 HNRNPMP52272 730 aaKnown RBP eCLIP19.16■□□□□ 0.66
SDCBP-211ENST00000523441 SYCP2Q9BX26 1530 aa19.15■□□□□ 0.66
SDCBP-211ENST00000523441 SPAG9O60271 1321 aaKnown RBP19.14■□□□□ 0.65
SDCBP-211ENST00000523441 PIP4K2BP78356 416 aa19.13■□□□□ 0.65
SDCBP-211ENST00000523441 GGT6Q6P531 493 aa19.13■□□□□ 0.65
SDCBP-211ENST00000523441 CCDC18Q5T9S5 1454 aa19.12■□□□□ 0.65
SDCBP-211ENST00000523441 NPATQ14207 1427 aa19.12■□□□□ 0.65
SDCBP-211ENST00000523441 ZNF142P52746 1687 aaPredicted RBP19.11■□□□□ 0.65
SDCBP-211ENST00000523441 CEP170BQ9Y4F5 1589 aaPredicted RBP19.1■□□□□ 0.65
SDCBP-211ENST00000523441 SENP3Q9H4L4 574 aaPredicted RBP19.09■□□□□ 0.65
SDCBP-211ENST00000523441 ATP7AQ04656 1500 aa19.09■□□□□ 0.65
SDCBP-211ENST00000523441 CASKIN1Q8WXD9 1431 aa19.08■□□□□ 0.65
SDCBP-211ENST00000523441 PPP6R1Q9UPN7 881 aa19.07■□□□□ 0.64
SDCBP-211ENST00000523441 A2MP01023 1474 aa19.05■□□□□ 0.64
SDCBP-211ENST00000523441 HSPA1LP34931 641 aa19.05■□□□□ 0.64
SDCBP-211ENST00000523441 PKD2Q13563 968 aa19.05■□□□□ 0.64
SDCBP-211ENST00000523441 PTPRKQ15262 1439 aa19.05■□□□□ 0.64
SDCBP-211ENST00000523441 INO80Q9ULG1 1556 aaPredicted RBP19.04■□□□□ 0.64
SDCBP-211ENST00000523441 GPATCH8Q9UKJ3 1502 aaKnown RBP19.04■□□□□ 0.64
SDCBP-211ENST00000523441 MED1Q15648 1581 aaPredicted RBP19.03■□□□□ 0.64
SDCBP-211ENST00000523441 CFDP1Q9UEE9 299 aaPredicted RBP19.03■□□□□ 0.64
SDCBP-211ENST00000523441 PLA2R1Q13018 1463 aa19.03■□□□□ 0.64
SDCBP-211ENST00000523441 TCOF1Q13428 1488 aaKnown RBP19.02■□□□□ 0.63
SDCBP-211ENST00000523441 PLXNC1O60486 1568 aa19.02■□□□□ 0.63
SDCBP-211ENST00000523441 POLR1AO95602 1720 aaPredicted RBP19.01■□□□□ 0.63
SDCBP-211ENST00000523441 ADGBQ8N7X0 1667 aa19■□□□□ 0.63
SDCBP-211ENST00000523441 DNMT1P26358 1616 aaKnown RBP19■□□□□ 0.63
SDCBP-211ENST00000523441 FYCO1Q9BQS8 1478 aa18.99■□□□□ 0.63
SDCBP-211ENST00000523441 CCNB3Q8WWL7 1395 aa18.99■□□□□ 0.63
SDCBP-211ENST00000523441 PHF23Q9BUL5 403 aaPredicted RBP18.97■□□□□ 0.63
SDCBP-211ENST00000523441 ZNF644Q9H582 1327 aaPredicted RBP18.97■□□□□ 0.63
SDCBP-211ENST00000523441 A2ML1A8K2U0 1454 aa18.97■□□□□ 0.63
SDCBP-211ENST00000523441 FBXO31Q5XUX0 539 aaPredicted RBP18.96■□□□□ 0.63
SDCBP-211ENST00000523441 TOM1O60784 492 aa18.95■□□□□ 0.62
SDCBP-211ENST00000523441 PLEKHH2Q8IVE3 1493 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 150.3 ms