RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ERBB3P21860 1342 aa1.35□□□□□ -2.19
RNU4-54P-201ENST00000516428 PBX2P40425 430 aa1.34□□□□□ -2.19
RNU4-54P-201ENST00000516428 NECTIN2Q92692 538 aa1.34□□□□□ -2.19
RNU4-54P-201ENST00000516428 KRTAP4-8Q9BYQ9 185 aa1.34□□□□□ -2.19
RNU4-54P-201ENST00000516428 CABP2Q9NPB3 220 aa1.34□□□□□ -2.19
RNU4-54P-201ENST00000516428 GOLGA8CPA6NN73 597 aa1.33□□□□□ -2.2
RNU4-54P-201ENST00000516428 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.33□□□□□ -2.2
RNU4-54P-201ENST00000516428 STK25O00506 426 aa1.33□□□□□ -2.2
RNU4-54P-201ENST00000516428 ECM2O94769 699 aaPredicted RBP1.33□□□□□ -2.2
RNU4-54P-201ENST00000516428 IRX5P78411 483 aaPredicted RBP1.33□□□□□ -2.2
RNU4-54P-201ENST00000516428 PCDHB8Q9UN66 801 aa1.33□□□□□ -2.2
RNU4-54P-201ENST00000516428 HDGFP51858 240 aaKnown RBP1.32□□□□□ -2.2
RNU4-54P-201ENST00000516428 HCSTQ9UBK5 93 aa1.32□□□□□ -2.2
RNU4-54P-201ENST00000516428 STK24Q9Y6E0 443 aa1.32□□□□□ -2.2
RNU4-54P-201ENST00000516428 SUZ12Q15022 739 aaKnown RBP1.31□□□□□ -2.2
RNU4-54P-201ENST00000516428 PPP4R3BQ5MIZ7 849 aa1.31□□□□□ -2.2
RNU4-54P-201ENST00000516428 IFFO2Q5TF58 517 aa1.31□□□□□ -2.2
RNU4-54P-201ENST00000516428 Q6ZNB5 142 aa1.31□□□□□ -2.2
RNU4-54P-201ENST00000516428 KRTAP9-2Q9BYQ4 174 aa1.31□□□□□ -2.2
RNU4-54P-201ENST00000516428 NBPF3Q9H094 633 aa1.31□□□□□ -2.2
RNU4-54P-201ENST00000516428 TRPC6Q9Y210 931 aa1.31□□□□□ -2.2
RNU4-54P-201ENST00000516428 KRTAP9-6A0A140TA67 174 aa1.3□□□□□ -2.2
RNU4-54P-201ENST00000516428 DCAF8L2P0C7V8 631 aa1.3□□□□□ -2.2
RNU4-54P-201ENST00000516428 HOXB1P14653 301 aaPredicted RBP1.3□□□□□ -2.2
RNU4-54P-201ENST00000516428 PDE4AP27815 886 aa1.3□□□□□ -2.2
RNU4-54P-201ENST00000516428 NYAP1Q6ZVC0 841 aa1.3□□□□□ -2.2
RNU4-54P-201ENST00000516428 KRTAP1-3Q8IUG1 177 aa1.3□□□□□ -2.2
RNU4-54P-201ENST00000516428 ZNF687Q8N1G0 1237 aa1.3□□□□□ -2.2
RNU4-54P-201ENST00000516428 ZNF775Q96BV0 537 aaPredicted RBP1.3□□□□□ -2.2
RNU4-54P-201ENST00000516428 KRTAP17-1Q9BYP8 105 aa1.3□□□□□ -2.2
RNU4-54P-201ENST00000516428 BCL11BQ9C0K0 894 aaPredicted RBP1.3□□□□□ -2.2
RNU4-54P-201ENST00000516428 ZBTB4Q9P1Z0 1013 aaPredicted RBP1.3□□□□□ -2.2
RNU4-54P-201ENST00000516428 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP1.29□□□□□ -2.2
RNU4-54P-201ENST00000516428 TK2O00142 265 aa1.29□□□□□ -2.2
RNU4-54P-201ENST00000516428 SLC34A2O95436 690 aa1.29□□□□□ -2.2
RNU4-54P-201ENST00000516428 LAPTM4AQ15012 233 aa1.29□□□□□ -2.2
RNU4-54P-201ENST00000516428 VARS2Q5ST30 1063 aaKnown RBP1.29□□□□□ -2.2
RNU4-54P-201ENST00000516428 LCE2AQ5TA79 106 aaPredicted RBP1.29□□□□□ -2.2
RNU4-54P-201ENST00000516428 RSPH4AQ5TD94 716 aa1.29□□□□□ -2.2
RNU4-54P-201ENST00000516428 ANKRD13DQ6ZTN6 518 aa1.29□□□□□ -2.2
RNU4-54P-201ENST00000516428 IFNLR1Q8IU57 520 aaPredicted RBP1.29□□□□□ -2.2
RNU4-54P-201ENST00000516428 MICALL2Q8IY33 904 aa1.29□□□□□ -2.2
RNU4-54P-201ENST00000516428 EFCAB3Q8N7B9 438 aa1.29□□□□□ -2.2
RNU4-54P-201ENST00000516428 ZFP91Q96JP5 570 aaPredicted RBP1.29□□□□□ -2.2
RNU4-54P-201ENST00000516428 WDR70Q9NW82 654 aa1.29□□□□□ -2.2
RNU4-54P-201ENST00000516428 TULP1O00294 542 aaPredicted RBP1.28□□□□□ -2.2
RNU4-54P-201ENST00000516428 ARHGAP33O14559 1287 aa1.28□□□□□ -2.2
RNU4-54P-201ENST00000516428 SLC24A1O60721 1099 aa1.28□□□□□ -2.2
RNU4-54P-201ENST00000516428 PTPREP23469 700 aa1.28□□□□□ -2.2
RNU4-54P-201ENST00000516428 GGCXP38435 758 aa1.28□□□□□ -2.2
RNU4-54P-201ENST00000516428 MAP3K9P80192 1104 aa1.28□□□□□ -2.2
RNU4-54P-201ENST00000516428 PDCD7Q8N8D1 485 aaKnown RBP1.28□□□□□ -2.2
RNU4-54P-201ENST00000516428 FBXW7Q969H0 707 aa1.28□□□□□ -2.2
RNU4-54P-201ENST00000516428 PRR14Q9BWN1 585 aa1.28□□□□□ -2.2
RNU4-54P-201ENST00000516428 CHGAP10645 457 aaKnown RBP1.27□□□□□ -2.21
RNU4-54P-201ENST00000516428 LSM11P83369 360 aaKnown RBP eCLIP1.27□□□□□ -2.21
RNU4-54P-201ENST00000516428 TRAF7Q6Q0C0 670 aa1.27□□□□□ -2.21
RNU4-54P-201ENST00000516428 ILDR1Q86SU0 546 aaPredicted RBP1.27□□□□□ -2.21
RNU4-54P-201ENST00000516428 MRPL50Q8N5N7 158 aaKnown RBP1.27□□□□□ -2.21
RNU4-54P-201ENST00000516428 ANKK1Q8NFD2 765 aa1.27□□□□□ -2.21
RNU4-54P-201ENST00000516428 CERKQ8TCT0 537 aa1.27□□□□□ -2.21
RNU4-54P-201ENST00000516428 EPAS1Q99814 870 aa1.27□□□□□ -2.21
RNU4-54P-201ENST00000516428 KRTAP4-8A0A0G2JLE6 195 aa1.26□□□□□ -2.21
RNU4-54P-201ENST00000516428 A0A0G2JS52 829 aa1.26□□□□□ -2.21
RNU4-54P-201ENST00000516428 ONECUT3O60422 494 aaPredicted RBP1.26□□□□□ -2.21
RNU4-54P-201ENST00000516428 HOXB3P14651 431 aaPredicted RBP1.26□□□□□ -2.21
RNU4-54P-201ENST00000516428 FOXK1P85037 733 aa1.26□□□□□ -2.21
RNU4-54P-201ENST00000516428 ARSIQ5FYB1 569 aa1.26□□□□□ -2.21
RNU4-54P-201ENST00000516428 LAPTM4BQ86VI4 370 aa1.26□□□□□ -2.21
RNU4-54P-201ENST00000516428 PACS2Q86VP3 889 aa1.26□□□□□ -2.21
RNU4-54P-201ENST00000516428 HS6ST3Q8IZP7 471 aa1.26□□□□□ -2.21
RNU4-54P-201ENST00000516428 PTCD2Q8WV60 388 aaKnown RBP1.26□□□□□ -2.21
RNU4-54P-201ENST00000516428 GPHNQ9NQX3 736 aaPredicted RBP1.26□□□□□ -2.21
RNU4-54P-201ENST00000516428 STK17AQ9UEE5 414 aa1.26□□□□□ -2.21
RNU4-54P-201ENST00000516428 PHF8Q9UPP1 1060 aa1.26□□□□□ -2.21
RNU4-54P-201ENST00000516428 PCDHGA4Q9Y5G9 962 aa1.26□□□□□ -2.21
RNU4-54P-201ENST00000516428 C2orf72A6NCS6 295 aa1.25□□□□□ -2.21
RNU4-54P-201ENST00000516428 SPDYE16A6NNV3 312 aaPredicted RBP1.25□□□□□ -2.21
RNU4-54P-201ENST00000516428 NUDT7P0C024 238 aa1.25□□□□□ -2.21
RNU4-54P-201ENST00000516428 SMYD5Q6GMV2 418 aa1.25□□□□□ -2.21
RNU4-54P-201ENST00000516428 DPY19L2Q6NUT2 758 aa1.25□□□□□ -2.21
RNU4-54P-201ENST00000516428 GPR153Q6NV75 609 aa1.25□□□□□ -2.21
RNU4-54P-201ENST00000516428 ADGRD1Q6QNK2 874 aa1.25□□□□□ -2.21
RNU4-54P-201ENST00000516428 PLPP6Q8IY26 295 aa1.25□□□□□ -2.21
RNU4-54P-201ENST00000516428 ZNF454Q8N9F8 522 aa1.25□□□□□ -2.21
RNU4-54P-201ENST00000516428 WNT2BQ93097 391 aa1.25□□□□□ -2.21
RNU4-54P-201ENST00000516428 ZDHHC16Q969W1 377 aa1.25□□□□□ -2.21
RNU4-54P-201ENST00000516428 TRIM52Q96A61 297 aa1.25□□□□□ -2.21
RNU4-54P-201ENST00000516428 DDX27Q96GQ7 796 aaKnown RBP1.25□□□□□ -2.21
RNU4-54P-201ENST00000516428 SLC4A5Q9BY07 1137 aa1.25□□□□□ -2.21
RNU4-54P-201ENST00000516428 KDM2AQ9Y2K7 1162 aa1.25□□□□□ -2.21
RNU4-54P-201ENST00000516428 NBPF26B4DH59 902 aa1.24□□□□□ -2.21
RNU4-54P-201ENST00000516428 PPP1R3GB7ZBB8 358 aa1.24□□□□□ -2.21
RNU4-54P-201ENST00000516428 AMER1Q5JTC6 1135 aaPredicted RBP1.24□□□□□ -2.21
RNU4-54P-201ENST00000516428 PPP1R15BQ5SWA1 713 aa1.24□□□□□ -2.21
RNU4-54P-201ENST00000516428 ZNF787Q6DD87 383 aa1.24□□□□□ -2.21
RNU4-54P-201ENST00000516428 TYW1BQ6NUM6 668 aa1.24□□□□□ -2.21
RNU4-54P-201ENST00000516428 P3H3Q8IVL6 736 aa1.24□□□□□ -2.21
RNU4-54P-201ENST00000516428 SPRYD3Q8NCJ5 442 aa1.24□□□□□ -2.21
RNU4-54P-201ENST00000516428 KCTD12Q96CX2 325 aaKnown RBP1.24□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms