RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 TRIM52Q96A61 297 aa21.11■□□□□ 0.97
NUP54-217ENST00000514987 PRG4Q92954 1404 aaPredicted RBP21.11■□□□□ 0.97
NUP54-217ENST00000514987 KDM6BO15054 1643 aa21.1■□□□□ 0.97
NUP54-217ENST00000514987 ADGBQ8N7X0 1667 aa21.08■□□□□ 0.97
NUP54-217ENST00000514987 MPHOSPH9Q99550 1183 aa21.08■□□□□ 0.97
NUP54-217ENST00000514987 CAMSAP2Q08AD1 1489 aa21.08■□□□□ 0.96
NUP54-217ENST00000514987 GPATCH8Q9UKJ3 1502 aaKnown RBP21.08■□□□□ 0.96
NUP54-217ENST00000514987 DENND4BO75064 1496 aaPredicted RBP21.07■□□□□ 0.96
NUP54-217ENST00000514987 CFDP1Q9UEE9 299 aaPredicted RBP21.06■□□□□ 0.96
NUP54-217ENST00000514987 KDM5BQ9UGL1 1544 aa21.06■□□□□ 0.96
NUP54-217ENST00000514987 KIF14Q15058 1648 aa21.04■□□□□ 0.96
NUP54-217ENST00000514987 ADGRL2O95490 1459 aa21.03■□□□□ 0.96
NUP54-217ENST00000514987 PLEKHD1A6NEE1 506 aa21.03■□□□□ 0.96
NUP54-217ENST00000514987 DDX10Q13206 875 aaKnown RBP21.03■□□□□ 0.96
NUP54-217ENST00000514987 CROCC2H7BZ55 1655 aa21.03■□□□□ 0.96
NUP54-217ENST00000514987 ZNF644Q9H582 1327 aaPredicted RBP21.01■□□□□ 0.95
NUP54-217ENST00000514987 ATP10BO94823 1461 aa21■□□□□ 0.95
NUP54-217ENST00000514987 NCOA1Q15788 1441 aa20.98■□□□□ 0.95
NUP54-217ENST00000514987 CCER2I3L3R5 266 aa20.97■□□□□ 0.95
NUP54-217ENST00000514987 ANKRD30BQ9BXX2 1392 aa20.97■□□□□ 0.95
NUP54-217ENST00000514987 ABCC10Q5T3U5 1492 aa20.97■□□□□ 0.95
NUP54-217ENST00000514987 ANKRD30AQ9BXX3 1397 aa20.97■□□□□ 0.95
NUP54-217ENST00000514987 RPRD2Q5VT52 1461 aaKnown RBP20.96■□□□□ 0.95
NUP54-217ENST00000514987 SHANK2Q9UPX8 1470 aa20.96■□□□□ 0.95
NUP54-217ENST00000514987 CDC42BPAQ5VT25 1732 aa20.96■□□□□ 0.95
NUP54-217ENST00000514987 PTPRGP23470 1445 aa20.95■□□□□ 0.94
NUP54-217ENST00000514987 ANP32CO43423 234 aa20.93■□□□□ 0.94
NUP54-217ENST00000514987 CHD1O14646 1710 aa20.92■□□□□ 0.94
NUP54-217ENST00000514987 SLC4A1APQ9BWU0 796 aaKnown RBP20.92■□□□□ 0.94
NUP54-217ENST00000514987 SHROOM2Q13796 1616 aa20.91■□□□□ 0.94
NUP54-217ENST00000514987 PZPP20742 1482 aa20.89■□□□□ 0.93
NUP54-217ENST00000514987 ZNF777Q9ULD5 760 aaPredicted RBP20.89■□□□□ 0.93
NUP54-217ENST00000514987 ARHGEF5Q12774 1597 aa20.89■□□□□ 0.93
NUP54-217ENST00000514987 EIF4G2P78344 907 aaKnown RBP eCLIP20.88■□□□□ 0.93
NUP54-217ENST00000514987 L3MBTL2Q969R5 705 aa20.88■□□□□ 0.93
NUP54-217ENST00000514987 HIRIP3Q9BW71 556 aaPredicted RBP20.87■□□□□ 0.93
NUP54-217ENST00000514987 TEX14Q8IWB6 1497 aa20.86■□□□□ 0.93
NUP54-217ENST00000514987 KIAA1107Q9UPP5 1409 aa20.85■□□□□ 0.93
NUP54-217ENST00000514987 ANKRD50Q9ULJ7 1429 aa20.85■□□□□ 0.93
NUP54-217ENST00000514987 C9orf84Q5VXU9 1444 aa20.84■□□□□ 0.93
NUP54-217ENST00000514987 RSPH4AQ5TD94 716 aa20.84■□□□□ 0.93
NUP54-217ENST00000514987 HSPA5P11021 654 aaKnown RBP20.83■□□□□ 0.92
NUP54-217ENST00000514987 TSPY4P0CV99 314 aa20.82■□□□□ 0.92
NUP54-217ENST00000514987 TSPY10P0CW01 314 aa20.82■□□□□ 0.92
NUP54-217ENST00000514987 PREX2Q70Z35 1606 aa20.81■□□□□ 0.92
NUP54-217ENST00000514987 FOXD1Q16676 465 aa20.81■□□□□ 0.92
NUP54-217ENST00000514987 KDM5DQ9BY66 1539 aa20.81■□□□□ 0.92
NUP54-217ENST00000514987 KCNH8Q96L42 1107 aa20.77■□□□□ 0.92
NUP54-217ENST00000514987 CCDC141Q6ZP82 1450 aa20.77■□□□□ 0.92
NUP54-217ENST00000514987 MBD5Q9P267 1494 aa20.76■□□□□ 0.91
NUP54-217ENST00000514987 ABCC2Q92887 1545 aa20.76■□□□□ 0.91
NUP54-217ENST00000514987 CDC42BPBQ9Y5S2 1711 aa20.76■□□□□ 0.91
NUP54-217ENST00000514987 WASHC2AQ641Q2 1341 aa20.74■□□□□ 0.91
NUP54-217ENST00000514987 SAMD9LQ8IVG5 1584 aa20.74■□□□□ 0.91
NUP54-217ENST00000514987 POLR1AO95602 1720 aaPredicted RBP20.73■□□□□ 0.91
NUP54-217ENST00000514987 PKD2Q13563 968 aa20.73■□□□□ 0.91
NUP54-217ENST00000514987 MAST1Q9Y2H9 1570 aa20.72■□□□□ 0.91
NUP54-217ENST00000514987 PLEKHH2Q8IVE3 1493 aa20.72■□□□□ 0.91
NUP54-217ENST00000514987 KIF15Q9NS87 1388 aa20.72■□□□□ 0.91
NUP54-217ENST00000514987 CNTLNQ9NXG0 1405 aa20.72■□□□□ 0.91
NUP54-217ENST00000514987 NUP155O75694 1391 aa20.71■□□□□ 0.91
NUP54-217ENST00000514987 NBPF8Q3BBV2 869 aa20.7■□□□□ 0.9
NUP54-217ENST00000514987 CCDC7Q96M83 1385 aa20.7■□□□□ 0.9
NUP54-217ENST00000514987 SPATA31E1Q6ZUB1 1445 aa20.69■□□□□ 0.9
NUP54-217ENST00000514987 MYO5CQ9NQX4 1742 aa20.68■□□□□ 0.9
NUP54-217ENST00000514987 ARHGEF12Q9NZN5 1544 aa20.68■□□□□ 0.9
NUP54-217ENST00000514987 HNRNPMP52272 730 aaKnown RBP eCLIP20.68■□□□□ 0.91e-7■■■■□ 25.9
NUP54-217ENST00000514987 UHRF1BP1LA0JNW5 1464 aa20.68■□□□□ 0.9
NUP54-217ENST00000514987 CLASP1Q7Z460 1538 aa20.68■□□□□ 0.9
NUP54-217ENST00000514987 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.67■□□□□ 0.95e-6■□□□□ 11
NUP54-217ENST00000514987 SUPT16HQ9Y5B9 1047 aaKnown RBP20.67■□□□□ 0.9
NUP54-217ENST00000514987 ARHGAP5Q13017 1502 aa20.66■□□□□ 0.9
NUP54-217ENST00000514987 UHRF1BP1Q6BDS2 1440 aa20.66■□□□□ 0.9
NUP54-217ENST00000514987 TTC37Q6PGP7 1564 aa20.65■□□□□ 0.9
NUP54-217ENST00000514987 PLXNC1O60486 1568 aa20.63■□□□□ 0.89
NUP54-217ENST00000514987 ERCC6L2Q5T890 1561 aa20.62■□□□□ 0.89
NUP54-217ENST00000514987 SYCP2Q9BX26 1530 aa20.62■□□□□ 0.89
NUP54-217ENST00000514987 ARID4BQ4LE39 1312 aaPredicted RBP20.61■□□□□ 0.89
NUP54-217ENST00000514987 UNC13BO14795 1591 aa20.6■□□□□ 0.89
NUP54-217ENST00000514987 RALGAPBQ86X10 1494 aa20.59■□□□□ 0.89
NUP54-217ENST00000514987 ZCCHC11Q5TAX3 1644 aaKnown RBP20.59■□□□□ 0.89
NUP54-217ENST00000514987 FAM135AQ9P2D6 1515 aa20.58■□□□□ 0.89
NUP54-217ENST00000514987 PLCH2O75038 1416 aa20.56■□□□□ 0.88
NUP54-217ENST00000514987 KIF7Q2M1P5 1343 aa20.56■□□□□ 0.88
NUP54-217ENST00000514987 C11orf95C9JLR9 678 aaPredicted RBP20.55■□□□□ 0.88
NUP54-217ENST00000514987 DUOX2Q9NRD8 1548 aa20.55■□□□□ 0.88
NUP54-217ENST00000514987 USP47Q96K76 1375 aa20.55■□□□□ 0.88
NUP54-217ENST00000514987 KDM5CP41229 1560 aa20.54■□□□□ 0.88
NUP54-217ENST00000514987 ARAP3Q8WWN8 1544 aa20.53■□□□□ 0.88
NUP54-217ENST00000514987 EFCAB2Q5VUJ9 269 aa20.53■□□□□ 0.88
NUP54-217ENST00000514987 PRKRIP1Q9H875 184 aaPredicted RBP20.52■□□□□ 0.88
NUP54-217ENST00000514987 IQGAP3Q86VI3 1631 aa20.52■□□□□ 0.87
NUP54-217ENST00000514987 ERBINQ96RT1 1412 aa20.51■□□□□ 0.87
NUP54-217ENST00000514987 NEFLP07196 543 aa20.51■□□□□ 0.87
NUP54-217ENST00000514987 ROCK2O75116 1388 aaKnown RBP20.5■□□□□ 0.87
NUP54-217ENST00000514987 ABCC1P33527 1531 aa20.48■□□□□ 0.87
NUP54-217ENST00000514987 CCDC144AA2RUR9 1427 aa20.48■□□□□ 0.87
NUP54-217ENST00000514987 MAGI2Q86UL8 1455 aa20.47■□□□□ 0.87
NUP54-217ENST00000514987 ZNF326Q5BKZ1 582 aaKnown RBP20.46■□□□□ 0.87
NUP54-217ENST00000514987 BCORL1Q5H9F3 1711 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms