RNA–Protein interactions for RNA: ENST00000512392.5

CHD1-208, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 2

Gene CHD1, Length 1,968 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-208ENST00000512392 ILDR1Q86SU0 546 aaPredicted RBP10.23□□□□□ -0.77
CHD1-208ENST00000512392 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.22□□□□□ -0.77
CHD1-208ENST00000512392 ARID3AQ99856 593 aa10.21□□□□□ -0.77
CHD1-208ENST00000512392 SLC39A7Q92504 469 aa10.21□□□□□ -0.78
CHD1-208ENST00000512392 CCDC9Q9Y3X0 531 aaKnown RBP10.2□□□□□ -0.78
CHD1-208ENST00000512392 C7P10643 843 aa10.19□□□□□ -0.78
CHD1-208ENST00000512392 IRX5P78411 483 aaPredicted RBP10.19□□□□□ -0.78
CHD1-208ENST00000512392 MS4A4AQ96JQ5 239 aa10.19□□□□□ -0.78
CHD1-208ENST00000512392 OCEL1Q9H607 264 aa10.18□□□□□ -0.78
CHD1-208ENST00000512392 IGSF3O75054 1194 aa10.17□□□□□ -0.78
CHD1-208ENST00000512392 PLCG2P16885 1265 aa10.15□□□□□ -0.78
CHD1-208ENST00000512392 PDCD7Q8N8D1 485 aaKnown RBP10.15□□□□□ -0.78
CHD1-208ENST00000512392 NECTIN2Q92692 538 aa10.15□□□□□ -0.78
CHD1-208ENST00000512392 PPP1R37O75864 691 aa10.14□□□□□ -0.79
CHD1-208ENST00000512392 SEC24BO95487 1268 aa10.14□□□□□ -0.79
CHD1-208ENST00000512392 C1orf115Q9H7X2 142 aa10.14□□□□□ -0.79
CHD1-208ENST00000512392 METRNQ9UJH8 293 aa10.14□□□□□ -0.79
CHD1-208ENST00000512392 ZMYND15Q9H091 742 aa10.13□□□□□ -0.79
CHD1-208ENST00000512392 COLQQ9Y215 455 aaPredicted RBP10.12□□□□□ -0.79
CHD1-208ENST00000512392 DPY19L2Q6NUT2 758 aa10.1□□□□□ -0.79
CHD1-208ENST00000512392 SHROOM4Q9ULL8 1493 aa10.1□□□□□ -0.79
CHD1-208ENST00000512392 POTEFA5A3E0 1075 aa10.09□□□□□ -0.79
CHD1-208ENST00000512392 ZBTB7CA1YPR0 619 aa10.08□□□□□ -0.8
CHD1-208ENST00000512392 RSPH6AQ9H0K4 717 aa10.08□□□□□ -0.8
CHD1-208ENST00000512392 NEUROD2Q15784 382 aa10.07□□□□□ -0.8
CHD1-208ENST00000512392 L3MBTL3Q96JM7 780 aaPredicted RBP10.07□□□□□ -0.8
CHD1-208ENST00000512392 BOLA1Q9Y3E2 137 aa10.05□□□□□ -0.8
CHD1-208ENST00000512392 G3V3G9 751 aa10.03□□□□□ -0.8
CHD1-208ENST00000512392 TMEM121BQ9BXQ6 578 aaPredicted RBP10.03□□□□□ -0.8
CHD1-208ENST00000512392 MICALL2Q8IY33 904 aa10.03□□□□□ -0.8
CHD1-208ENST00000512392 PDIA4P13667 645 aaKnown RBP10.01□□□□□ -0.81
CHD1-208ENST00000512392 LMOD2Q6P5Q4 547 aa10.01□□□□□ -0.81
CHD1-208ENST00000512392 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.01□□□□□ -0.81
CHD1-208ENST00000512392 CADPS2Q86UW7 1296 aa10.01□□□□□ -0.81
CHD1-208ENST00000512392 ARID3CA6NKF2 412 aa9.97□□□□□ -0.81
CHD1-208ENST00000512392 PDE4AP27815 886 aa9.95□□□□□ -0.82
CHD1-208ENST00000512392 CDK11BP21127 795 aaKnown RBP9.94□□□□□ -0.82
CHD1-208ENST00000512392 CHMP4AQ9BY43 222 aa9.94□□□□□ -0.82
CHD1-208ENST00000512392 CDK11AQ9UQ88 783 aaPredicted RBP9.94□□□□□ -0.82
CHD1-208ENST00000512392 CRISPLD2Q9H0B8 497 aa9.94□□□□□ -0.82
CHD1-208ENST00000512392 NCKAP5LQ9HCH0 1330 aa9.93□□□□□ -0.82
CHD1-208ENST00000512392 C3orf67Q6ZVT6 689 aa9.92□□□□□ -0.82
CHD1-208ENST00000512392 POTEB2H3BUK9 544 aa9.91□□□□□ -0.82
CHD1-208ENST00000512392 GPHNQ9NQX3 736 aaPredicted RBP9.91□□□□□ -0.82
CHD1-208ENST00000512392 WDR70Q9NW82 654 aa9.91□□□□□ -0.82
CHD1-208ENST00000512392 LARP6Q9BRS8 491 aaKnown RBP9.9□□□□□ -0.82
CHD1-208ENST00000512392 SLC24A3Q9HC58 644 aa9.9□□□□□ -0.82
CHD1-208ENST00000512392 POTEJP0CG39 1038 aa9.9□□□□□ -0.83
CHD1-208ENST00000512392 TMC2Q8TDI7 906 aa9.9□□□□□ -0.83
CHD1-208ENST00000512392 MFSD10Q14728 455 aa9.89□□□□□ -0.83
CHD1-208ENST00000512392 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.89□□□□□ -0.83
CHD1-208ENST00000512392 MAMSTRQ6ZN01 415 aa9.88□□□□□ -0.83
CHD1-208ENST00000512392 APBB1O00213 710 aa9.88□□□□□ -0.83
CHD1-208ENST00000512392 KCTD17Q8N5Z5 321 aa9.88□□□□□ -0.83
CHD1-208ENST00000512392 KIF3CO14782 793 aa9.87□□□□□ -0.83
CHD1-208ENST00000512392 HSP90B1P14625 803 aaKnown RBP9.87□□□□□ -0.83
CHD1-208ENST00000512392 TMEM92Q6UXU6 159 aa9.86□□□□□ -0.83
CHD1-208ENST00000512392 ZNF428Q96B54 188 aa9.86□□□□□ -0.83
CHD1-208ENST00000512392 DDX27Q96GQ7 796 aaKnown RBP9.86□□□□□ -0.83
CHD1-208ENST00000512392 C2orf72A6NCS6 295 aa9.86□□□□□ -0.83
CHD1-208ENST00000512392 RAD21O60216 631 aa9.86□□□□□ -0.83
CHD1-208ENST00000512392 RGS22Q8NE09 1264 aa9.85□□□□□ -0.83
CHD1-208ENST00000512392 ZC3H15Q8WU90 426 aaKnown RBP9.85□□□□□ -0.83
CHD1-208ENST00000512392 SCUBE2Q9NQ36 999 aa9.84□□□□□ -0.83
CHD1-208ENST00000512392 HMGB1P09429 215 aaKnown RBP9.84□□□□□ -0.83
CHD1-208ENST00000512392 FOXK1P85037 733 aa9.84□□□□□ -0.83
CHD1-208ENST00000512392 PPP1R15BQ5SWA1 713 aa9.83□□□□□ -0.84
CHD1-208ENST00000512392 DSG2Q14126 1118 aa9.82□□□□□ -0.84
CHD1-208ENST00000512392 MTMR7Q9Y216 660 aa9.82□□□□□ -0.84
CHD1-208ENST00000512392 PUS7Q96PZ0 661 aaKnown RBP9.81□□□□□ -0.84
CHD1-208ENST00000512392 E2F4Q16254 413 aa9.81□□□□□ -0.84
CHD1-208ENST00000512392 LHX8Q68G74 356 aa9.81□□□□□ -0.84
CHD1-208ENST00000512392 P3H3Q8IVL6 736 aa9.79□□□□□ -0.84
CHD1-208ENST00000512392 PLPP6Q8IY26 295 aa9.79□□□□□ -0.84
CHD1-208ENST00000512392 CAMK2BQ13554 666 aa9.78□□□□□ -0.84
CHD1-208ENST00000512392 SLAIN1Q8ND83 568 aa9.77□□□□□ -0.84
CHD1-208ENST00000512392 FOXD4L5Q5VV16 416 aaPredicted RBP9.76□□□□□ -0.85
CHD1-208ENST00000512392 FOXD4L4Q8WXT5 416 aaPredicted RBP9.76□□□□□ -0.85
CHD1-208ENST00000512392 KCNV2Q8TDN2 545 aa9.75□□□□□ -0.85
CHD1-208ENST00000512392 OTUD5Q96G74 571 aa9.75□□□□□ -0.85
CHD1-208ENST00000512392 RBM25P49756 843 aaKnown RBP9.74□□□□□ -0.85
CHD1-208ENST00000512392 IL27Q8NEV9 243 aa9.74□□□□□ -0.85
CHD1-208ENST00000512392 ARHGEF1Q92888 912 aaKnown RBP9.74□□□□□ -0.85
CHD1-208ENST00000512392 ARIH1Q9Y4X5 557 aaPredicted RBP9.73□□□□□ -0.85
CHD1-208ENST00000512392 GPBP1L1Q9HC44 474 aaPredicted RBP9.71□□□□□ -0.86
CHD1-208ENST00000512392 SLC34A2O95436 690 aa9.7□□□□□ -0.86
CHD1-208ENST00000512392 CCDC82Q8N4S0 544 aa9.7□□□□□ -0.86
CHD1-208ENST00000512392 EMILIN3Q9NT22 766 aa9.7□□□□□ -0.86
CHD1-208ENST00000512392 DHX37Q8IY37 1157 aaKnown RBP9.7□□□□□ -0.86
CHD1-208ENST00000512392 AEBP1Q8IUX7 1158 aa9.69□□□□□ -0.86
CHD1-208ENST00000512392 OXER1Q8TDS5 423 aa9.68□□□□□ -0.86
CHD1-208ENST00000512392 PTCD2Q8WV60 388 aaKnown RBP9.67□□□□□ -0.86
CHD1-208ENST00000512392 SNPHO15079 494 aa9.66□□□□□ -0.86
CHD1-208ENST00000512392 DOK7Q18PE1 504 aa9.66□□□□□ -0.86
CHD1-208ENST00000512392 TBC1D12O60347 775 aa9.65□□□□□ -0.86
CHD1-208ENST00000512392 HOXB3P14651 431 aaPredicted RBP9.64□□□□□ -0.87
CHD1-208ENST00000512392 TRAIPQ9BWF2 469 aa9.64□□□□□ -0.87
CHD1-208ENST00000512392 DPYSL4O14531 572 aa9.64□□□□□ -0.87
CHD1-208ENST00000512392 MAP3K9P80192 1104 aa9.64□□□□□ -0.87
CHD1-208ENST00000512392 UPF1Q92900 1129 aaKnown RBP eCLIP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms