RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 HIRIP3Q9BW71 556 aaPredicted RBP22.86■■□□□ 1.25
MSH5-SAPCD1-208ENST00000498473 EPRSP07814 1512 aaKnown RBP22.86■■□□□ 1.25
MSH5-SAPCD1-208ENST00000498473 HECW1Q76N89 1606 aa22.85■■□□□ 1.25
MSH5-SAPCD1-208ENST00000498473 TONSLQ96HA7 1378 aa22.85■■□□□ 1.25
MSH5-SAPCD1-208ENST00000498473 TCOF1Q13428 1488 aaKnown RBP22.84■■□□□ 1.25
MSH5-SAPCD1-208ENST00000498473 ABCC2Q92887 1545 aa22.83■■□□□ 1.25
MSH5-SAPCD1-208ENST00000498473 ATP10BO94823 1461 aa22.82■■□□□ 1.24
MSH5-SAPCD1-208ENST00000498473 KDM5BQ9UGL1 1544 aa22.82■■□□□ 1.24
MSH5-SAPCD1-208ENST00000498473 GCC2Q8IWJ2 1684 aa22.8■■□□□ 1.24
MSH5-SAPCD1-208ENST00000498473 ZCCHC11Q5TAX3 1644 aaKnown RBP22.78■■□□□ 1.24
MSH5-SAPCD1-208ENST00000498473 DENND4BO75064 1496 aaPredicted RBP22.75■■□□□ 1.23
MSH5-SAPCD1-208ENST00000498473 CCER2I3L3R5 266 aa22.74■■□□□ 1.23
MSH5-SAPCD1-208ENST00000498473 RRP7BPQ9NSQ0 103 aa22.73■■□□□ 1.23
MSH5-SAPCD1-208ENST00000498473 AKNAQ7Z591 1439 aa22.73■■□□□ 1.23
MSH5-SAPCD1-208ENST00000498473 KDM6BO15054 1643 aa22.73■■□□□ 1.23
MSH5-SAPCD1-208ENST00000498473 MIA2Q96PC5 1412 aa22.71■■□□□ 1.23
MSH5-SAPCD1-208ENST00000498473 CHIC2Q9UKJ5 165 aa22.7■■□□□ 1.23
MSH5-SAPCD1-208ENST00000498473 NPM1P06748 294 aaKnown RBP eCLIP22.7■■□□□ 1.22
MSH5-SAPCD1-208ENST00000498473 ANP32CO43423 234 aa22.69■■□□□ 1.22
MSH5-SAPCD1-208ENST00000498473 UHRF1BP1LA0JNW5 1464 aa22.68■■□□□ 1.22
MSH5-SAPCD1-208ENST00000498473 PLEKHD1A6NEE1 506 aa22.67■■□□□ 1.22
MSH5-SAPCD1-208ENST00000498473 KIF14Q15058 1648 aa22.67■■□□□ 1.22
MSH5-SAPCD1-208ENST00000498473 BCL11AQ9H165 835 aa22.66■■□□□ 1.22
MSH5-SAPCD1-208ENST00000498473 ASXL2Q76L83 1435 aa22.64■■□□□ 1.21
MSH5-SAPCD1-208ENST00000498473 TRIM52Q96A61 297 aa22.6■■□□□ 1.21
MSH5-SAPCD1-208ENST00000498473 CDK11AQ9UQ88 783 aaPredicted RBP22.6■■□□□ 1.21
MSH5-SAPCD1-208ENST00000498473 MPHOSPH9Q99550 1183 aa22.58■■□□□ 1.21
MSH5-SAPCD1-208ENST00000498473 TROQ12816 1431 aaPredicted RBP22.57■■□□□ 1.2
MSH5-SAPCD1-208ENST00000498473 TSHZ2Q9NRE2 1034 aa22.55■■□□□ 1.2
MSH5-SAPCD1-208ENST00000498473 DAPK1P53355 1430 aa22.55■■□□□ 1.2
MSH5-SAPCD1-208ENST00000498473 DNMT1P26358 1616 aaKnown RBP22.55■■□□□ 1.2
MSH5-SAPCD1-208ENST00000498473 HSPA5P11021 654 aaKnown RBP22.54■■□□□ 1.2
MSH5-SAPCD1-208ENST00000498473 WDR7Q9Y4E6 1490 aa22.54■■□□□ 1.2
MSH5-SAPCD1-208ENST00000498473 ROCK1Q13464 1354 aa22.54■■□□□ 1.2
MSH5-SAPCD1-208ENST00000498473 FKBP8Q14318 412 aa22.53■■□□□ 1.2
MSH5-SAPCD1-208ENST00000498473 ABCC5O15440 1437 aa22.53■■□□□ 1.2
MSH5-SAPCD1-208ENST00000498473 TTC37Q6PGP7 1564 aa22.52■■□□□ 1.2
MSH5-SAPCD1-208ENST00000498473 ZNF777Q9ULD5 760 aaPredicted RBP22.52■■□□□ 1.2
MSH5-SAPCD1-208ENST00000498473 WASHC2AQ641Q2 1341 aa22.52■■□□□ 1.2
MSH5-SAPCD1-208ENST00000498473 ZNF644Q9H582 1327 aaPredicted RBP22.49■■□□□ 1.19
MSH5-SAPCD1-208ENST00000498473 FOXD1Q16676 465 aa22.49■■□□□ 1.19
MSH5-SAPCD1-208ENST00000498473 L3MBTL2Q969R5 705 aa22.49■■□□□ 1.19
MSH5-SAPCD1-208ENST00000498473 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.48■■□□□ 1.19
MSH5-SAPCD1-208ENST00000498473 FAM69CQ0P6D2 419 aa22.48■■□□□ 1.19
MSH5-SAPCD1-208ENST00000498473 BCANQ96GW7 911 aa22.48■■□□□ 1.19
MSH5-SAPCD1-208ENST00000498473 ANKRD30BQ9BXX2 1392 aa22.48■■□□□ 1.19
MSH5-SAPCD1-208ENST00000498473 TSPOAP1O95153 1857 aa22.46■■□□□ 1.19
MSH5-SAPCD1-208ENST00000498473 TRHP20396 242 aaPredicted RBP22.46■■□□□ 1.19
MSH5-SAPCD1-208ENST00000498473 EIF4G2P78344 907 aaKnown RBP eCLIP22.45■■□□□ 1.18
MSH5-SAPCD1-208ENST00000498473 RPRD2Q5VT52 1461 aaKnown RBP22.45■■□□□ 1.18
MSH5-SAPCD1-208ENST00000498473 ABCC10Q5T3U5 1492 aa22.42■■□□□ 1.18
MSH5-SAPCD1-208ENST00000498473 TEX14Q8IWB6 1497 aa22.42■■□□□ 1.18
MSH5-SAPCD1-208ENST00000498473 CDC42BPAQ5VT25 1732 aa22.42■■□□□ 1.18
MSH5-SAPCD1-208ENST00000498473 GPATCH8Q9UKJ3 1502 aaKnown RBP22.4■■□□□ 1.18
MSH5-SAPCD1-208ENST00000498473 CFDP1Q9UEE9 299 aaPredicted RBP22.39■■□□□ 1.18
MSH5-SAPCD1-208ENST00000498473 NCOA1Q15788 1441 aa22.39■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 CNTLNQ9NXG0 1405 aa22.39■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 C11orf95C9JLR9 678 aaPredicted RBP22.39■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 NBPF8Q3BBV2 869 aa22.39■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 CDC42BPBQ9Y5S2 1711 aa22.38■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 NEFLP07196 543 aa22.38■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 DIP2BQ9P265 1576 aa22.37■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 KIF13AQ9H1H9 1805 aa22.37■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 CAMSAP2Q08AD1 1489 aa22.36■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 ITSN2Q9NZM3 1697 aa22.35■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 PZPP20742 1482 aa22.35■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 CCDC7Q96M83 1385 aa22.35■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 PRKCSHP14314 528 aaPredicted RBP22.35■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 ADGBQ8N7X0 1667 aa22.35■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 ARHGAP5Q13017 1502 aa22.34■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 MYO5CQ9NQX4 1742 aa22.34■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 SLC4A1APQ9BWU0 796 aaKnown RBP22.34■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 CD109Q6YHK3 1445 aa22.33■■□□□ 1.17
MSH5-SAPCD1-208ENST00000498473 SPATA31E1Q6ZUB1 1445 aa22.32■■□□□ 1.16
MSH5-SAPCD1-208ENST00000498473 ABCA9Q8IUA7 1624 aa22.32■■□□□ 1.16
MSH5-SAPCD1-208ENST00000498473 HNRNPUQ00839 825 aaKnown RBP eCLIP22.32■■□□□ 1.16
MSH5-SAPCD1-208ENST00000498473 HNRNPMP52272 730 aaKnown RBP eCLIP22.31■■□□□ 1.16
MSH5-SAPCD1-208ENST00000498473 CROCC2H7BZ55 1655 aa22.31■■□□□ 1.16
MSH5-SAPCD1-208ENST00000498473 POLR1AO95602 1720 aaPredicted RBP22.31■■□□□ 1.16
MSH5-SAPCD1-208ENST00000498473 PREX2Q70Z35 1606 aa22.3■■□□□ 1.16
MSH5-SAPCD1-208ENST00000498473 ADGRL2O95490 1459 aa22.3■■□□□ 1.16
MSH5-SAPCD1-208ENST00000498473 CCDC184Q52MB2 194 aa22.29■■□□□ 1.16
MSH5-SAPCD1-208ENST00000498473 ANP32EQ9BTT0 268 aa22.27■■□□□ 1.16
MSH5-SAPCD1-208ENST00000498473 PLCH2O75038 1416 aa22.26■■□□□ 1.15
MSH5-SAPCD1-208ENST00000498473 PRKRIP1Q9H875 184 aaPredicted RBP22.26■■□□□ 1.15
MSH5-SAPCD1-208ENST00000498473 SAMD9LQ8IVG5 1584 aa22.25■■□□□ 1.15
MSH5-SAPCD1-208ENST00000498473 FANCAO15360 1455 aa22.25■■□□□ 1.15
MSH5-SAPCD1-208ENST00000498473 MBD5Q9P267 1494 aa22.25■■□□□ 1.15
MSH5-SAPCD1-208ENST00000498473 MAP3K4Q9Y6R4 1608 aa22.24■■□□□ 1.15
MSH5-SAPCD1-208ENST00000498473 KIF7Q2M1P5 1343 aa22.23■■□□□ 1.15
MSH5-SAPCD1-208ENST00000498473 KIAA1107Q9UPP5 1409 aa22.22■■□□□ 1.15
MSH5-SAPCD1-208ENST00000498473 SYCP2Q9BX26 1530 aa22.22■■□□□ 1.15
MSH5-SAPCD1-208ENST00000498473 ARHGEF12Q9NZN5 1544 aa22.21■■□□□ 1.15
MSH5-SAPCD1-208ENST00000498473 PPRC1Q5VV67 1664 aaKnown RBP22.21■■□□□ 1.15
MSH5-SAPCD1-208ENST00000498473 EFCAB2Q5VUJ9 269 aa22.21■■□□□ 1.15
MSH5-SAPCD1-208ENST00000498473 AFAP1Q8N556 730 aa22.2■■□□□ 1.14
MSH5-SAPCD1-208ENST00000498473 RAPGEF3O95398 923 aa22.19■■□□□ 1.14
MSH5-SAPCD1-208ENST00000498473 ANKRD30AQ9BXX3 1397 aa22.18■■□□□ 1.14
MSH5-SAPCD1-208ENST00000498473 GLI2P10070 1586 aa22.17■■□□□ 1.14
MSH5-SAPCD1-208ENST00000498473 ERICH6Q7L0X2 663 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms