RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TMEM92Q6UXU6 159 aa13.88□□□□□ -0.19
VPS50-219ENST00000495039 STK25O00506 426 aa13.85□□□□□ -0.19
VPS50-219ENST00000495039 FBXO22Q8NEZ5 403 aa13.84□□□□□ -0.19
VPS50-219ENST00000495039 KRTAP3-3Q9BYR6 98 aa13.83□□□□□ -0.2
VPS50-219ENST00000495039 KRTAP3-2Q9BYR7 98 aa13.83□□□□□ -0.2
VPS50-219ENST00000495039 ZSWIM6Q9HCJ5 1215 aa13.82□□□□□ -0.2
VPS50-219ENST00000495039 ERBB3P21860 1342 aa13.82□□□□□ -0.2
VPS50-219ENST00000495039 MFRPQ9BY79 579 aa13.8□□□□□ -0.2
VPS50-219ENST00000495039 PKD2Q13563 968 aa13.79□□□□□ -0.2
VPS50-219ENST00000495039 RGL2O15211 777 aa13.77□□□□□ -0.21
VPS50-219ENST00000495039 VARS2Q5ST30 1063 aaKnown RBP13.72□□□□□ -0.21
VPS50-219ENST00000495039 GPR153Q6NV75 609 aa13.72□□□□□ -0.21
VPS50-219ENST00000495039 ARSIQ5FYB1 569 aa13.64□□□□□ -0.23
VPS50-219ENST00000495039 C2orf72A6NCS6 295 aa13.63□□□□□ -0.23
VPS50-219ENST00000495039 KIF3CO14782 793 aa13.63□□□□□ -0.23
VPS50-219ENST00000495039 ZNF687Q8N1G0 1237 aa13.63□□□□□ -0.23
VPS50-219ENST00000495039 TMC2Q8TDI7 906 aa13.58□□□□□ -0.24
VPS50-219ENST00000495039 KHSRPQ92945 711 aaKnown RBP eCLIP13.56□□□□□ -0.24
VPS50-219ENST00000495039 ZNF316A6NFI3 1004 aaPredicted RBP13.55□□□□□ -0.24
VPS50-219ENST00000495039 PPP1R37O75864 691 aa13.52□□□□□ -0.25
VPS50-219ENST00000495039 HS6ST3Q8IZP7 471 aa13.52□□□□□ -0.25
VPS50-219ENST00000495039 SLC34A2O95436 690 aa13.51□□□□□ -0.25
VPS50-219ENST00000495039 NUDT7P0C024 238 aa13.49□□□□□ -0.25
VPS50-219ENST00000495039 RNF166Q96A37 237 aaPredicted RBP13.49□□□□□ -0.25
VPS50-219ENST00000495039 PCDHGA4Q9Y5G9 962 aa13.48□□□□□ -0.25
VPS50-219ENST00000495039 PTGER2P43116 358 aa13.47□□□□□ -0.25
VPS50-219ENST00000495039 MYT1LQ9UL68 1186 aa13.47□□□□□ -0.25
VPS50-219ENST00000495039 ANKRD13DQ6ZTN6 518 aa13.43□□□□□ -0.26
VPS50-219ENST00000495039 CHGAP10645 457 aaKnown RBP13.42□□□□□ -0.26
VPS50-219ENST00000495039 LHX6Q9UPM6 363 aa13.42□□□□□ -0.26
VPS50-219ENST00000495039 PBX2P40425 430 aa13.41□□□□□ -0.26
VPS50-219ENST00000495039 LSM11P83369 360 aaKnown RBP eCLIP13.4□□□□□ -0.26
VPS50-219ENST00000495039 FOXK1P85037 733 aa13.37□□□□□ -0.27
VPS50-219ENST00000495039 GPHNQ9NQX3 736 aaPredicted RBP13.36□□□□□ -0.27
VPS50-219ENST00000495039 PSDA5PKW4 1024 aaPredicted RBP13.35□□□□□ -0.27
VPS50-219ENST00000495039 PTCD2Q8WV60 388 aaKnown RBP13.35□□□□□ -0.27
VPS50-219ENST00000495039 PLPP6Q8IY26 295 aa13.34□□□□□ -0.27
VPS50-219ENST00000495039 RYDENQ9NUL5 291 aaKnown RBP13.34□□□□□ -0.27
VPS50-219ENST00000495039 DNAJC5Q9H3Z4 198 aa13.33□□□□□ -0.28
VPS50-219ENST00000495039 AXIN2Q9Y2T1 843 aa13.3□□□□□ -0.28
VPS50-219ENST00000495039 DSG2Q14126 1118 aa13.29□□□□□ -0.28
VPS50-219ENST00000495039 NKX1-1Q15270 411 aaPredicted RBP13.29□□□□□ -0.28
VPS50-219ENST00000495039 POTEEQ6S8J3 1075 aa13.29□□□□□ -0.28
VPS50-219ENST00000495039 KDM4FA0A1W2PPD8 638 aa13.28□□□□□ -0.28
VPS50-219ENST00000495039 TBC1D12O60347 775 aa13.27□□□□□ -0.29
VPS50-219ENST00000495039 ARHGAP33O14559 1287 aa13.25□□□□□ -0.29
VPS50-219ENST00000495039 PPP4R3BQ5MIZ7 849 aa13.21□□□□□ -0.29
VPS50-219ENST00000495039 ADGRD1Q6QNK2 874 aa13.2□□□□□ -0.3
VPS50-219ENST00000495039 CRISPLD2Q9H0B8 497 aa13.18□□□□□ -0.3
VPS50-219ENST00000495039 OXER1Q8TDS5 423 aa13.16□□□□□ -0.3
VPS50-219ENST00000495039 TK2O00142 265 aa13.15□□□□□ -0.3
VPS50-219ENST00000495039 PPP1R15BQ5SWA1 713 aa13.15□□□□□ -0.3
VPS50-219ENST00000495039 PSEN2P49810 448 aa13.14□□□□□ -0.31
VPS50-219ENST00000495039 UPF1Q92900 1129 aaKnown RBP eCLIP13.13□□□□□ -0.31
VPS50-219ENST00000495039 KCNH8Q96L42 1107 aa13.13□□□□□ -0.31
VPS50-219ENST00000495039 PDE4AP27815 886 aa13.12□□□□□ -0.31
VPS50-219ENST00000495039 DMRTA1Q5VZB9 504 aa13.12□□□□□ -0.31
VPS50-219ENST00000495039 NCKAP5LQ9HCH0 1330 aa13.1□□□□□ -0.31
VPS50-219ENST00000495039 GTPBP6O43824 516 aaPredicted RBP13.09□□□□□ -0.31
VPS50-219ENST00000495039 HCSTQ9UBK5 93 aa13.09□□□□□ -0.31
VPS50-219ENST00000495039 HRO43593 1189 aa13.08□□□□□ -0.32
VPS50-219ENST00000495039 KCNK17Q96T54 332 aa13.08□□□□□ -0.32
VPS50-219ENST00000495039 DCAF8L2P0C7V8 631 aa13.06□□□□□ -0.32
VPS50-219ENST00000495039 ZNF454Q8N9F8 522 aa13.06□□□□□ -0.32
VPS50-219ENST00000495039 STAC3Q96MF2 364 aa13.04□□□□□ -0.32
VPS50-219ENST00000495039 DDX27Q96GQ7 796 aaKnown RBP13.03□□□□□ -0.32
VPS50-219ENST00000495039 LARP6Q9BRS8 491 aaKnown RBP13.02□□□□□ -0.33
VPS50-219ENST00000495039 BCL2L12Q9HB09 334 aa13.01□□□□□ -0.33
VPS50-219ENST00000495039 FOSBP53539 338 aa12.99□□□□□ -0.33
VPS50-219ENST00000495039 PLA2G2EQ9NZK7 142 aa12.99□□□□□ -0.33
VPS50-219ENST00000495039 EVI5O60447 810 aa12.98□□□□□ -0.33
VPS50-219ENST00000495039 MFSD10Q14728 455 aa12.98□□□□□ -0.33
VPS50-219ENST00000495039 VPS9D1Q9Y2B5 631 aa12.98□□□□□ -0.33
VPS50-219ENST00000495039 KCTD12Q96CX2 325 aaKnown RBP12.97□□□□□ -0.33
VPS50-219ENST00000495039 JPH4Q96JJ6 628 aa12.97□□□□□ -0.33
VPS50-219ENST00000495039 ANO8Q9HCE9 1232 aaPredicted RBP12.97□□□□□ -0.33
VPS50-219ENST00000495039 PTPREP23469 700 aa12.96□□□□□ -0.33
VPS50-219ENST00000495039 SLC4A5Q9BY07 1137 aa12.95□□□□□ -0.34
VPS50-219ENST00000495039 MAP3K9P80192 1104 aa12.94□□□□□ -0.34
VPS50-219ENST00000495039 ZDHHC16Q969W1 377 aa12.91□□□□□ -0.34
VPS50-219ENST00000495039 ZBED2Q9BTP6 218 aa12.88□□□□□ -0.35
VPS50-219ENST00000495039 ADAM33Q9BZ11 813 aa12.88□□□□□ -0.35
VPS50-219ENST00000495039 EMILIN3Q9NT22 766 aa12.88□□□□□ -0.35
VPS50-219ENST00000495039 BHMG1C9JSJ3 638 aaPredicted RBP12.85□□□□□ -0.35
VPS50-219ENST00000495039 CADPS2Q86UW7 1296 aa12.85□□□□□ -0.35
VPS50-219ENST00000495039 GOLGA8CPA6NN73 597 aa12.83□□□□□ -0.36
VPS50-219ENST00000495039 MRPL50Q8N5N7 158 aaKnown RBP12.83□□□□□ -0.36
VPS50-219ENST00000495039 NBPF3Q9H094 633 aa12.83□□□□□ -0.36
VPS50-219ENST00000495039 PTPN5P54829 565 aa12.82□□□□□ -0.36
VPS50-219ENST00000495039 PPP1R3GB7ZBB8 358 aa12.8□□□□□ -0.36
VPS50-219ENST00000495039 THSD4Q6ZMP0 1018 aa12.8□□□□□ -0.36
VPS50-219ENST00000495039 PCDHGA10Q9Y5H3 936 aa12.8□□□□□ -0.36
VPS50-219ENST00000495039 WNT2BQ93097 391 aa12.79□□□□□ -0.36
VPS50-219ENST00000495039 FBXW7Q969H0 707 aa12.79□□□□□ -0.36
VPS50-219ENST00000495039 PHF14O94880 888 aa12.78□□□□□ -0.36
VPS50-219ENST00000495039 TYW1BQ6NUM6 668 aa12.78□□□□□ -0.36
VPS50-219ENST00000495039 CAMK2BQ13554 666 aa12.76□□□□□ -0.37
VPS50-219ENST00000495039 BBXQ8WY36 941 aaPredicted RBP12.74□□□□□ -0.37
VPS50-219ENST00000495039 RABGEF1Q9UJ41 708 aa12.74□□□□□ -0.37
VPS50-219ENST00000495039 DPYSL4O14531 572 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms