RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 FAM9BQ8IZU0 186 aa21.09■□□□□ 0.97
SDF4-207ENST00000494748 NBPF8Q3BBV2 869 aa21.08■□□□□ 0.97
SDF4-207ENST00000494748 CHIC2Q9UKJ5 165 aa21.08■□□□□ 0.96
SDF4-207ENST00000494748 ANKRD30BQ9BXX2 1392 aa21.07■□□□□ 0.96
SDF4-207ENST00000494748 MRS2Q9HD23 443 aa21.07■□□□□ 0.96
SDF4-207ENST00000494748 SMG6Q86US8 1419 aaKnown RBP21.06■□□□□ 0.96
SDF4-207ENST00000494748 KIF7Q2M1P5 1343 aa21.05■□□□□ 0.96
SDF4-207ENST00000494748 MYT1LQ9UL68 1186 aa21.05■□□□□ 0.96
SDF4-207ENST00000494748 BCORL1Q5H9F3 1711 aa21.05■□□□□ 0.96
SDF4-207ENST00000494748 MIA2Q96PC5 1412 aa21.05■□□□□ 0.96
SDF4-207ENST00000494748 FOXD1Q16676 465 aa21.04■□□□□ 0.96
SDF4-207ENST00000494748 RNF123Q5XPI4 1314 aa21.04■□□□□ 0.96
SDF4-207ENST00000494748 GAPVD1Q14C86 1478 aa21.04■□□□□ 0.96
SDF4-207ENST00000494748 EPRSP07814 1512 aaKnown RBP21.04■□□□□ 0.96
SDF4-207ENST00000494748 DHX29Q7Z478 1369 aaKnown RBP21.02■□□□□ 0.96
SDF4-207ENST00000494748 DEKP35659 375 aaKnown RBP21.02■□□□□ 0.96
SDF4-207ENST00000494748 CDK13Q14004 1512 aaKnown RBP21.01■□□□□ 0.95
SDF4-207ENST00000494748 TDRD9Q8NDG6 1382 aaKnown RBP21.01■□□□□ 0.95
SDF4-207ENST00000494748 DNMT1P26358 1616 aaKnown RBP21.01■□□□□ 0.95
SDF4-207ENST00000494748 PAK3O75914 559 aaPredicted RBP21.01■□□□□ 0.95
SDF4-207ENST00000494748 WDR62O43379 1518 aa21.01■□□□□ 0.95
SDF4-207ENST00000494748 MBD5Q9P267 1494 aa20.99■□□□□ 0.95
SDF4-207ENST00000494748 NOP58Q9Y2X3 529 aaKnown RBP20.98■□□□□ 0.95
SDF4-207ENST00000494748 ROCK1Q13464 1354 aa20.97■□□□□ 0.95
SDF4-207ENST00000494748 DAPK1P53355 1430 aa20.96■□□□□ 0.95
SDF4-207ENST00000494748 TARBP1Q13395 1621 aaKnown RBP20.96■□□□□ 0.95
SDF4-207ENST00000494748 PBRM1Q86U86 1689 aa20.94■□□□□ 0.94
SDF4-207ENST00000494748 KDM5CP41229 1560 aa20.92■□□□□ 0.94
SDF4-207ENST00000494748 ABCC5O15440 1437 aa20.92■□□□□ 0.94
SDF4-207ENST00000494748 IQGAP2Q13576 1575 aa20.92■□□□□ 0.94
SDF4-207ENST00000494748 PZPP20742 1482 aa20.91■□□□□ 0.94
SDF4-207ENST00000494748 KIF14Q15058 1648 aa20.9■□□□□ 0.94
SDF4-207ENST00000494748 NUDCQ9Y266 331 aa20.9■□□□□ 0.94
SDF4-207ENST00000494748 ADGBQ8N7X0 1667 aa20.85■□□□□ 0.93
SDF4-207ENST00000494748 ADAMTS12P58397 1594 aa20.84■□□□□ 0.93
SDF4-207ENST00000494748 NBR1Q14596 966 aa20.83■□□□□ 0.93
SDF4-207ENST00000494748 IPO9Q96P70 1041 aaKnown RBP20.83■□□□□ 0.92
SDF4-207ENST00000494748 E9PCH4 1651 aa20.82■□□□□ 0.92
SDF4-207ENST00000494748 CROCC2H7BZ55 1655 aa20.81■□□□□ 0.92
SDF4-207ENST00000494748 USP47Q96K76 1375 aa20.8■□□□□ 0.92
SDF4-207ENST00000494748 PNISRQ8TF01 805 aaKnown RBP20.79■□□□□ 0.92
SDF4-207ENST00000494748 ZNF644Q9H582 1327 aaPredicted RBP20.79■□□□□ 0.92
SDF4-207ENST00000494748 CCDC136Q96JN2 1154 aa20.79■□□□□ 0.92
SDF4-207ENST00000494748 LRPPRCP42704 1394 aaKnown RBP20.78■□□□□ 0.92
SDF4-207ENST00000494748 SLC4A1APQ9BWU0 796 aaKnown RBP20.77■□□□□ 0.92
SDF4-207ENST00000494748 NUP153P49790 1475 aaKnown RBP20.75■□□□□ 0.91
SDF4-207ENST00000494748 ARID4BQ4LE39 1312 aaPredicted RBP20.74■□□□□ 0.91
SDF4-207ENST00000494748 KIAA1107Q9UPP5 1409 aa20.74■□□□□ 0.91
SDF4-207ENST00000494748 KIAA0556O60303 1618 aa20.74■□□□□ 0.91
SDF4-207ENST00000494748 UHRF1BP1Q6BDS2 1440 aa20.73■□□□□ 0.91
SDF4-207ENST00000494748 RALGAPBQ86X10 1494 aa20.73■□□□□ 0.91
SDF4-207ENST00000494748 ANP32AP39687 249 aaKnown RBP20.72■□□□□ 0.91
SDF4-207ENST00000494748 RAPGEF6Q8TEU7 1601 aa20.72■□□□□ 0.91
SDF4-207ENST00000494748 ADGRL2O95490 1459 aa20.72■□□□□ 0.91
SDF4-207ENST00000494748 CAMSAP2Q08AD1 1489 aa20.71■□□□□ 0.91
SDF4-207ENST00000494748 DISP1Q96F81 1524 aa20.71■□□□□ 0.91
SDF4-207ENST00000494748 ARID3CA6NKF2 412 aa20.71■□□□□ 0.91
SDF4-207ENST00000494748 ITSN2Q9NZM3 1697 aa20.7■□□□□ 0.91
SDF4-207ENST00000494748 SENP3-EIF4A1A0A087X0R7 540 aa20.7■□□□□ 0.9
SDF4-207ENST00000494748 ADCY10Q96PN6 1610 aa20.68■□□□□ 0.9
SDF4-207ENST00000494748 ZBTB47Q9UFB7 747 aaPredicted RBP20.67■□□□□ 0.9
SDF4-207ENST00000494748 ROCK2O75116 1388 aaKnown RBP20.66■□□□□ 0.9
SDF4-207ENST00000494748 PDS5BQ9NTI5 1447 aa20.66■□□□□ 0.9
SDF4-207ENST00000494748 CNGB1Q14028 1251 aaPredicted RBP20.65■□□□□ 0.9
SDF4-207ENST00000494748 ARHGEF12Q9NZN5 1544 aa20.65■□□□□ 0.9
SDF4-207ENST00000494748 KIF15Q9NS87 1388 aa20.64■□□□□ 0.89
SDF4-207ENST00000494748 RRP1P56182 461 aaKnown RBP20.64■□□□□ 0.89
SDF4-207ENST00000494748 BRD4O60885 1362 aaPredicted RBP20.63■□□□□ 0.89
SDF4-207ENST00000494748 KIAA0586Q9BVV6 1533 aa20.62■□□□□ 0.89
SDF4-207ENST00000494748 CDC42BPAQ5VT25 1732 aa20.62■□□□□ 0.89
SDF4-207ENST00000494748 GPATCH8Q9UKJ3 1502 aaKnown RBP20.61■□□□□ 0.89
SDF4-207ENST00000494748 CEP170Q5SW79 1584 aa20.61■□□□□ 0.89
SDF4-207ENST00000494748 EXOC6Q8TAG9 804 aa20.61■□□□□ 0.89
SDF4-207ENST00000494748 TMC1Q8TDI8 760 aa20.6■□□□□ 0.89
SDF4-207ENST00000494748 KTN1Q86UP2 1357 aaKnown RBP20.59■□□□□ 0.89
SDF4-207ENST00000494748 PRG4Q92954 1404 aaPredicted RBP20.59■□□□□ 0.89
SDF4-207ENST00000494748 POLR3GLQ9BT43 218 aa20.59■□□□□ 0.89
SDF4-207ENST00000494748 KDM5DQ9BY66 1539 aa20.59■□□□□ 0.89
SDF4-207ENST00000494748 MYBBP1AQ9BQG0 1328 aaKnown RBP20.58■□□□□ 0.89
SDF4-207ENST00000494748 PKD2Q13563 968 aa20.58■□□□□ 0.88
SDF4-207ENST00000494748 TROQ12816 1431 aaPredicted RBP20.58■□□□□ 0.88
SDF4-207ENST00000494748 ZNF326Q5BKZ1 582 aaKnown RBP20.57■□□□□ 0.88
SDF4-207ENST00000494748 TCERG1O14776 1098 aaKnown RBP20.56■□□□□ 0.88
SDF4-207ENST00000494748 RTL5Q5HYW3 569 aaPredicted RBP20.55■□□□□ 0.88
SDF4-207ENST00000494748 BACH2Q9BYV9 841 aa20.55■□□□□ 0.88
SDF4-207ENST00000494748 PDE4AP27815 886 aa20.54■□□□□ 0.88
SDF4-207ENST00000494748 TRPM1Q7Z4N2 1603 aa20.54■□□□□ 0.88
SDF4-207ENST00000494748 PARD3Q8TEW0 1356 aa20.53■□□□□ 0.88
SDF4-207ENST00000494748 RCAN3Q9UKA8 241 aa20.53■□□□□ 0.88
SDF4-207ENST00000494748 RALBP1Q15311 655 aa20.52■□□□□ 0.88
SDF4-207ENST00000494748 ANKRD50Q9ULJ7 1429 aa20.52■□□□□ 0.88
SDF4-207ENST00000494748 IL27Q8NEV9 243 aa20.51■□□□□ 0.87
SDF4-207ENST00000494748 ST20-MTHFSA0A0A6YYL1 179 aa20.5■□□□□ 0.87
SDF4-207ENST00000494748 CARD11Q9BXL7 1154 aa20.5■□□□□ 0.87
SDF4-207ENST00000494748 MS4A1P11836 297 aa20.5■□□□□ 0.87
SDF4-207ENST00000494748 SHANK2Q9UPX8 1470 aa20.49■□□□□ 0.87
SDF4-207ENST00000494748 ANKRD30AQ9BXX3 1397 aa20.49■□□□□ 0.87
SDF4-207ENST00000494748 PTPRGP23470 1445 aa20.49■□□□□ 0.87
SDF4-207ENST00000494748 DNAJC5BQ9UF47 199 aa20.48■□□□□ 0.87
SDF4-207ENST00000494748 CFDP1Q9UEE9 299 aaPredicted RBP20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms