RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 DAPK1P53355 1430 aa20.58■□□□□ 0.89
SMPD4-219ENST00000491128 TTC37Q6PGP7 1564 aa20.58■□□□□ 0.88
SMPD4-219ENST00000491128 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.58■□□□□ 0.881e-6■■■■□ 23.9
SMPD4-219ENST00000491128 NAIPQ13075 1403 aa20.57■□□□□ 0.88
SMPD4-219ENST00000491128 CDC42BPAQ5VT25 1732 aa20.56■□□□□ 0.88
SMPD4-219ENST00000491128 HFM1A2PYH4 1435 aa20.55■□□□□ 0.88
SMPD4-219ENST00000491128 ASXL2Q76L83 1435 aa20.53■□□□□ 0.88
SMPD4-219ENST00000491128 ITSN2Q9NZM3 1697 aa20.51■□□□□ 0.87
SMPD4-219ENST00000491128 TRIM52Q96A61 297 aa20.51■□□□□ 0.87
SMPD4-219ENST00000491128 ARHGAP5Q13017 1502 aa20.51■□□□□ 0.87
SMPD4-219ENST00000491128 WDR7Q9Y4E6 1490 aa20.5■□□□□ 0.87
SMPD4-219ENST00000491128 KDM6BO15054 1643 aa20.49■□□□□ 0.87
SMPD4-219ENST00000491128 SIN3AQ96ST3 1273 aa20.48■□□□□ 0.87
SMPD4-219ENST00000491128 DNMT1P26358 1616 aaKnown RBP20.47■□□□□ 0.87
SMPD4-219ENST00000491128 NEUROD1Q13562 356 aa20.47■□□□□ 0.87
SMPD4-219ENST00000491128 CDC42BPBQ9Y5S2 1711 aa20.47■□□□□ 0.87
SMPD4-219ENST00000491128 TSPY4P0CV99 314 aa20.46■□□□□ 0.87
SMPD4-219ENST00000491128 TSPY10P0CW01 314 aa20.46■□□□□ 0.87
SMPD4-219ENST00000491128 RIMBP3CA6NJZ7 1639 aa20.46■□□□□ 0.87
SMPD4-219ENST00000491128 RIMBP3BA6NNM3 1639 aa20.46■□□□□ 0.87
SMPD4-219ENST00000491128 RIMBP3Q9UFD9 1639 aa20.46■□□□□ 0.87
SMPD4-219ENST00000491128 SAMD9LQ8IVG5 1584 aa20.45■□□□□ 0.86
SMPD4-219ENST00000491128 AKNAQ7Z591 1439 aa20.45■□□□□ 0.86
SMPD4-219ENST00000491128 PLCH2O75038 1416 aa20.44■□□□□ 0.86
SMPD4-219ENST00000491128 EFCAB2Q5VUJ9 269 aa20.43■□□□□ 0.86
SMPD4-219ENST00000491128 PREX2Q70Z35 1606 aa20.43■□□□□ 0.86
SMPD4-219ENST00000491128 FOXD1Q16676 465 aa20.43■□□□□ 0.86
SMPD4-219ENST00000491128 MBD5Q9P267 1494 aa20.43■□□□□ 0.86
SMPD4-219ENST00000491128 MAPKBP1O60336 1514 aa20.42■□□□□ 0.86
SMPD4-219ENST00000491128 NCOA1Q15788 1441 aa20.42■□□□□ 0.86
SMPD4-219ENST00000491128 SYCP2Q9BX26 1530 aa20.42■□□□□ 0.86
SMPD4-219ENST00000491128 C9orf84Q5VXU9 1444 aa20.41■□□□□ 0.86
SMPD4-219ENST00000491128 AFAP1Q8N556 730 aa20.41■□□□□ 0.86
SMPD4-219ENST00000491128 ARHGEF12Q9NZN5 1544 aa20.4■□□□□ 0.86
SMPD4-219ENST00000491128 ROCK1Q13464 1354 aa20.39■□□□□ 0.85
SMPD4-219ENST00000491128 MYO5CQ9NQX4 1742 aa20.37■□□□□ 0.85
SMPD4-219ENST00000491128 ANKRD30AQ9BXX3 1397 aa20.37■□□□□ 0.85
SMPD4-219ENST00000491128 TRAPPC8Q9Y2L5 1435 aa20.35■□□□□ 0.85
SMPD4-219ENST00000491128 CLSPNQ9HAW4 1339 aa20.34■□□□□ 0.85
SMPD4-219ENST00000491128 CCDC141Q6ZP82 1450 aa20.34■□□□□ 0.85
SMPD4-219ENST00000491128 MPHOSPH9Q99550 1183 aa20.34■□□□□ 0.85
SMPD4-219ENST00000491128 MYT1LQ9UL68 1186 aa20.33■□□□□ 0.85
SMPD4-219ENST00000491128 FANCAO15360 1455 aa20.32■□□□□ 0.84
SMPD4-219ENST00000491128 KIF15Q9NS87 1388 aa20.32■□□□□ 0.84
SMPD4-219ENST00000491128 GCC2Q8IWJ2 1684 aa20.32■□□□□ 0.84
SMPD4-219ENST00000491128 ANKRD50Q9ULJ7 1429 aa20.3■□□□□ 0.84
SMPD4-219ENST00000491128 SLC4A1APQ9BWU0 796 aaKnown RBP20.3■□□□□ 0.84
SMPD4-219ENST00000491128 CD109Q6YHK3 1445 aa20.3■□□□□ 0.84
SMPD4-219ENST00000491128 CROCC2H7BZ55 1655 aa20.29■□□□□ 0.84
SMPD4-219ENST00000491128 RSPH4AQ5TD94 716 aa20.29■□□□□ 0.84
SMPD4-219ENST00000491128 DENND4BO75064 1496 aaPredicted RBP20.28■□□□□ 0.84
SMPD4-219ENST00000491128 ADGRL2O95490 1459 aa20.28■□□□□ 0.84
SMPD4-219ENST00000491128 ABCA9Q8IUA7 1624 aa20.28■□□□□ 0.84
SMPD4-219ENST00000491128 KIAA1107Q9UPP5 1409 aa20.27■□□□□ 0.84
SMPD4-219ENST00000491128 FAM69CQ0P6D2 419 aa20.27■□□□□ 0.84
SMPD4-219ENST00000491128 ARHGEF5Q12774 1597 aa20.27■□□□□ 0.84
SMPD4-219ENST00000491128 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.27■□□□□ 0.837e-8■■■■□ 25
SMPD4-219ENST00000491128 SCAPERQ9BY12 1400 aa20.26■□□□□ 0.83
SMPD4-219ENST00000491128 SHANK2Q9UPX8 1470 aa20.25■□□□□ 0.83
SMPD4-219ENST00000491128 SPAG9O60271 1321 aaKnown RBP20.25■□□□□ 0.83
SMPD4-219ENST00000491128 ABCC1P33527 1531 aa20.25■□□□□ 0.83
SMPD4-219ENST00000491128 ADGRL1O94910 1474 aa20.24■□□□□ 0.83
SMPD4-219ENST00000491128 PLEKHH2Q8IVE3 1493 aa20.24■□□□□ 0.83
SMPD4-219ENST00000491128 ADGBQ8N7X0 1667 aa20.23■□□□□ 0.83
SMPD4-219ENST00000491128 NUP155O75694 1391 aa20.22■□□□□ 0.83
SMPD4-219ENST00000491128 RAPGEF3O95398 923 aa20.21■□□□□ 0.83
SMPD4-219ENST00000491128 PKD2Q13563 968 aa20.2■□□□□ 0.82
SMPD4-219ENST00000491128 PZPP20742 1482 aa20.17■□□□□ 0.82
SMPD4-219ENST00000491128 ARAP3Q8WWN8 1544 aa20.16■□□□□ 0.82
SMPD4-219ENST00000491128 TONSLQ96HA7 1378 aa20.13■□□□□ 0.81
SMPD4-219ENST00000491128 ANKRD30BQ9BXX2 1392 aa20.1■□□□□ 0.81
SMPD4-219ENST00000491128 MAST1Q9Y2H9 1570 aa20.1■□□□□ 0.81
SMPD4-219ENST00000491128 ZNF316A6NFI3 1004 aaPredicted RBP20.09■□□□□ 0.81
SMPD4-219ENST00000491128 ZFYVE16Q7Z3T8 1539 aa20.08■□□□□ 0.81
SMPD4-219ENST00000491128 KIF3BO15066 747 aa20.08■□□□□ 0.8
SMPD4-219ENST00000491128 PPP1R15AO75807 674 aaPredicted RBP20.07■□□□□ 0.8
SMPD4-219ENST00000491128 HIRIP3Q9BW71 556 aaPredicted RBP20.06■□□□□ 0.8
SMPD4-219ENST00000491128 ATP7AQ04656 1500 aa20.05■□□□□ 0.8
SMPD4-219ENST00000491128 L3MBTL2Q969R5 705 aa20.05■□□□□ 0.8
SMPD4-219ENST00000491128 DIP2BQ9P265 1576 aa20.05■□□□□ 0.8
SMPD4-219ENST00000491128 DUOX2Q9NRD8 1548 aa20.04■□□□□ 0.8
SMPD4-219ENST00000491128 PLXNC1O60486 1568 aa20.04■□□□□ 0.8
SMPD4-219ENST00000491128 ZNF518AQ6AHZ1 1483 aa20.04■□□□□ 0.8
SMPD4-219ENST00000491128 RTEL1-TNFRSF6BF6WH68 1400 aa20.04■□□□□ 0.8
SMPD4-219ENST00000491128 POGZQ7Z3K3 1410 aa20.04■□□□□ 0.8
SMPD4-219ENST00000491128 TSPOAP1O95153 1857 aa20.04■□□□□ 0.8
SMPD4-219ENST00000491128 MAP3K4Q9Y6R4 1608 aa20.01■□□□□ 0.79
SMPD4-219ENST00000491128 FAM135AQ9P2D6 1515 aa20.01■□□□□ 0.79
SMPD4-219ENST00000491128 ERBINQ96RT1 1412 aa20■□□□□ 0.79
SMPD4-219ENST00000491128 GGT6Q6P531 493 aa19.99■□□□□ 0.79
SMPD4-219ENST00000491128 NEO1Q92859 1461 aa19.99■□□□□ 0.79
SMPD4-219ENST00000491128 ACIN1Q9UKV3 1341 aaKnown RBP19.99■□□□□ 0.79
SMPD4-219ENST00000491128 INO80Q9ULG1 1556 aaPredicted RBP19.99■□□□□ 0.79
SMPD4-219ENST00000491128 TIMELESSQ9UNS1 1208 aa19.98■□□□□ 0.79
SMPD4-219ENST00000491128 DHX29Q7Z478 1369 aaKnown RBP19.98■□□□□ 0.79
SMPD4-219ENST00000491128 GLI2P10070 1586 aa19.97■□□□□ 0.79
SMPD4-219ENST00000491128 KIDINS220Q9ULH0 1771 aa19.97■□□□□ 0.79
SMPD4-219ENST00000491128 ZNF326Q5BKZ1 582 aaKnown RBP19.96■□□□□ 0.79
SMPD4-219ENST00000491128 DIEXFQ68CQ4 756 aaKnown RBP19.96■□□□□ 0.79
SMPD4-219ENST00000491128 RPRD2Q5VT52 1461 aaKnown RBP19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms