RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.52□□□□□ -0.41
PRPF40A-210ENST00000489741 ATAD2BQ9ULI0 1458 aa12.49□□□□□ -0.41
PRPF40A-210ENST00000489741 SLAIN1Q8ND83 568 aa12.49□□□□□ -0.41
PRPF40A-210ENST00000489741 DNAJC5Q9H3Z4 198 aa12.49□□□□□ -0.41
PRPF40A-210ENST00000489741 MICALL2Q8IY33 904 aa12.45□□□□□ -0.42
PRPF40A-210ENST00000489741 NKX1-1Q15270 411 aaPredicted RBP12.44□□□□□ -0.42
PRPF40A-210ENST00000489741 TMEM121BQ9BXQ6 578 aaPredicted RBP12.43□□□□□ -0.42
PRPF40A-210ENST00000489741 RYDENQ9NUL5 291 aaKnown RBP12.42□□□□□ -0.42
PRPF40A-210ENST00000489741 SMARCA2P51531 1590 aa12.39□□□□□ -0.43
PRPF40A-210ENST00000489741 HMGXB3Q12766 1538 aa12.38□□□□□ -0.43
PRPF40A-210ENST00000489741 SMARCA4P51532 1647 aa12.38□□□□□ -0.43
PRPF40A-210ENST00000489741 CUX2O14529 1486 aa12.37□□□□□ -0.43
PRPF40A-210ENST00000489741 PPP1R37O75864 691 aa12.36□□□□□ -0.43
PRPF40A-210ENST00000489741 BAZ1AQ9NRL2 1556 aaPredicted RBP12.35□□□□□ -0.43
PRPF40A-210ENST00000489741 ERCC6Q03468 1493 aa12.34□□□□□ -0.43
PRPF40A-210ENST00000489741 PEG3Q9GZU2 1588 aa12.32□□□□□ -0.44
PRPF40A-210ENST00000489741 BBXQ8WY36 941 aaPredicted RBP12.32□□□□□ -0.44
PRPF40A-210ENST00000489741 BAZ1BQ9UIG0 1483 aaKnown RBP12.31□□□□□ -0.44
PRPF40A-210ENST00000489741 NESP48681 1621 aa12.3□□□□□ -0.44
PRPF40A-210ENST00000489741 GTPBP6O43824 516 aaPredicted RBP12.3□□□□□ -0.44
PRPF40A-210ENST00000489741 SNPHO15079 494 aa12.29□□□□□ -0.44
PRPF40A-210ENST00000489741 FAM163AQ96GL9 167 aaPredicted RBP12.29□□□□□ -0.44
PRPF40A-210ENST00000489741 MROH2BQ7Z745 1585 aa12.28□□□□□ -0.44
PRPF40A-210ENST00000489741 TMEM92Q6UXU6 159 aa12.27□□□□□ -0.45
PRPF40A-210ENST00000489741 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.27□□□□□ -0.45
PRPF40A-210ENST00000489741 TMC2Q8TDI7 906 aa12.23□□□□□ -0.45
PRPF40A-210ENST00000489741 C2orf72A6NCS6 295 aa12.2□□□□□ -0.46
PRPF40A-210ENST00000489741 SPRYD3Q8NCJ5 442 aa12.19□□□□□ -0.46
PRPF40A-210ENST00000489741 LAMC3Q9Y6N6 1575 aa12.18□□□□□ -0.46
PRPF40A-210ENST00000489741 ST18O60284 1047 aa12.17□□□□□ -0.46
PRPF40A-210ENST00000489741 DOK7Q18PE1 504 aa12.17□□□□□ -0.46
PRPF40A-210ENST00000489741 PDS5BQ9NTI5 1447 aa12.17□□□□□ -0.46
PRPF40A-210ENST00000489741 CADPSQ9ULU8 1353 aa12.17□□□□□ -0.46
PRPF40A-210ENST00000489741 KIF3CO14782 793 aa12.16□□□□□ -0.46
PRPF40A-210ENST00000489741 LCE2DQ5TA82 110 aaPredicted RBP12.16□□□□□ -0.46
PRPF40A-210ENST00000489741 CFAP44Q96MT7 982 aa12.16□□□□□ -0.46
PRPF40A-210ENST00000489741 PAXIP1Q6ZW49 1069 aaPredicted RBP12.15□□□□□ -0.46
PRPF40A-210ENST00000489741 ZNF710Q8N1W2 664 aa12.15□□□□□ -0.46
PRPF40A-210ENST00000489741 HOXB3P14651 431 aaPredicted RBP12.14□□□□□ -0.47
PRPF40A-210ENST00000489741 THOC2Q8NI27 1593 aaKnown RBP12.13□□□□□ -0.47
PRPF40A-210ENST00000489741 RIMBP2O15034 1052 aa12.13□□□□□ -0.47
PRPF40A-210ENST00000489741 GPHNQ9NQX3 736 aaPredicted RBP12.11□□□□□ -0.47
PRPF40A-210ENST00000489741 POTEMA6NI47 508 aa12.1□□□□□ -0.47
PRPF40A-210ENST00000489741 POTEGQ6S5H5 508 aa12.09□□□□□ -0.47
PRPF40A-210ENST00000489741 MARVELD3Q96A59 401 aa12.07□□□□□ -0.48
PRPF40A-210ENST00000489741 WIZO95785 1651 aa12.06□□□□□ -0.48
PRPF40A-210ENST00000489741 RSF1Q96T23 1441 aaPredicted RBP12.06□□□□□ -0.48
PRPF40A-210ENST00000489741 PDE4AP27815 886 aa12.06□□□□□ -0.48
PRPF40A-210ENST00000489741 CRISPLD2Q9H0B8 497 aa12.06□□□□□ -0.48
PRPF40A-210ENST00000489741 FOXK1P85037 733 aa12.05□□□□□ -0.48
PRPF40A-210ENST00000489741 DSG2Q14126 1118 aa12.05□□□□□ -0.48
PRPF40A-210ENST00000489741 NCKAP5LQ9HCH0 1330 aa12.05□□□□□ -0.48
PRPF40A-210ENST00000489741 EMP3P54852 163 aa12.04□□□□□ -0.48
PRPF40A-210ENST00000489741 CADPS2Q86UW7 1296 aa12.04□□□□□ -0.48
PRPF40A-210ENST00000489741 PLPP6Q8IY26 295 aa12.04□□□□□ -0.48
PRPF40A-210ENST00000489741 ZSWIM6Q9HCJ5 1215 aa12.04□□□□□ -0.48
PRPF40A-210ENST00000489741 KIF21AQ7Z4S6 1674 aa12.03□□□□□ -0.48
PRPF40A-210ENST00000489741 MRC2Q9UBG0 1479 aa12.03□□□□□ -0.48
PRPF40A-210ENST00000489741 LARP6Q9BRS8 491 aaKnown RBP12.02□□□□□ -0.49
PRPF40A-210ENST00000489741 HOXB1P14653 301 aaPredicted RBP12.01□□□□□ -0.49
PRPF40A-210ENST00000489741 PPP1R15BQ5SWA1 713 aa12.01□□□□□ -0.49
PRPF40A-210ENST00000489741 CFTRP13569 1480 aa12.01□□□□□ -0.49
PRPF40A-210ENST00000489741 WDR62O43379 1518 aa12□□□□□ -0.49
PRPF40A-210ENST00000489741 ARSIQ5FYB1 569 aa11.99□□□□□ -0.49
PRPF40A-210ENST00000489741 DDX27Q96GQ7 796 aaKnown RBP11.99□□□□□ -0.49
PRPF40A-210ENST00000489741 FANCD2Q9BXW9 1451 aa11.97□□□□□ -0.49
PRPF40A-210ENST00000489741 SLC34A2O95436 690 aa11.97□□□□□ -0.49
PRPF40A-210ENST00000489741 GPR153Q6NV75 609 aa11.97□□□□□ -0.49
PRPF40A-210ENST00000489741 CEP164Q9UPV0 1460 aa11.96□□□□□ -0.49
PRPF40A-210ENST00000489741 PCDHGA4Q9Y5G9 962 aa11.95□□□□□ -0.5
PRPF40A-210ENST00000489741 FAM205CA6NFA0 338 aa11.94□□□□□ -0.5
PRPF40A-210ENST00000489741 MFSD10Q14728 455 aa11.94□□□□□ -0.5
PRPF40A-210ENST00000489741 KHSRPQ92945 711 aaKnown RBP eCLIP11.94□□□□□ -0.51e-8■■□□□ 12.7
PRPF40A-210ENST00000489741 TOP2AP11388 1531 aaKnown RBP11.94□□□□□ -0.5
PRPF40A-210ENST00000489741 ERBB3P21860 1342 aa11.92□□□□□ -0.5
PRPF40A-210ENST00000489741 NUDT7P0C024 238 aa11.91□□□□□ -0.5
PRPF40A-210ENST00000489741 PTCD2Q8WV60 388 aaKnown RBP11.91□□□□□ -0.5
PRPF40A-210ENST00000489741 UPF1Q92900 1129 aaKnown RBP eCLIP11.91□□□□□ -0.5
PRPF40A-210ENST00000489741 TBC1D12O60347 775 aa11.9□□□□□ -0.5
PRPF40A-210ENST00000489741 HS3ST6Q96QI5 342 aa11.9□□□□□ -0.5
PRPF40A-210ENST00000489741 URB2Q14146 1524 aaKnown RBP11.89□□□□□ -0.51
PRPF40A-210ENST00000489741 PLCB2Q00722 1185 aa11.88□□□□□ -0.51
PRPF40A-210ENST00000489741 VARS2Q5ST30 1063 aaKnown RBP11.87□□□□□ -0.51
PRPF40A-210ENST00000489741 CDAN1Q8IWY9 1227 aa11.87□□□□□ -0.51
PRPF40A-210ENST00000489741 TSHZ2Q9NRE2 1034 aa11.87□□□□□ -0.51
PRPF40A-210ENST00000489741 PCDH10Q9P2E7 1040 aa11.87□□□□□ -0.51
PRPF40A-210ENST00000489741 OXER1Q8TDS5 423 aa11.86□□□□□ -0.51
PRPF40A-210ENST00000489741 CCDC88BA6NC98 1476 aa11.86□□□□□ -0.51
PRPF40A-210ENST00000489741 ZNF316A6NFI3 1004 aaPredicted RBP11.84□□□□□ -0.51
PRPF40A-210ENST00000489741 WDR70Q9NW82 654 aa11.84□□□□□ -0.51
PRPF40A-210ENST00000489741 POTEB3A0JP26 581 aa11.83□□□□□ -0.52
PRPF40A-210ENST00000489741 POTEBQ6S5H4 581 aa11.83□□□□□ -0.52
PRPF40A-210ENST00000489741 LHX6Q9UPM6 363 aa11.81□□□□□ -0.52
PRPF40A-210ENST00000489741 MAP3K9P80192 1104 aa11.8□□□□□ -0.52
PRPF40A-210ENST00000489741 EMILIN3Q9NT22 766 aa11.8□□□□□ -0.52
PRPF40A-210ENST00000489741 CAMK2BQ13554 666 aa11.77□□□□□ -0.53
PRPF40A-210ENST00000489741 KDM4FA0A1W2PPD8 638 aa11.76□□□□□ -0.53
PRPF40A-210ENST00000489741 IFT140Q96RY7 1462 aa11.76□□□□□ -0.53
PRPF40A-210ENST00000489741 PSDA5PKW4 1024 aaPredicted RBP11.75□□□□□ -0.53
PRPF40A-210ENST00000489741 EVI5O60447 810 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms