RNA–Protein interactions for RNA: ENST00000487747.5

SMC4-219, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 637 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-219ENST00000487747 POTEBQ6S5H4 581 aa13.47□□□□□ -0.25
SMC4-219ENST00000487747 EMP3P54852 163 aa13.46□□□□□ -0.25
SMC4-219ENST00000487747 DOK7Q18PE1 504 aa13.44□□□□□ -0.26
SMC4-219ENST00000487747 ZNF710Q8N1W2 664 aa13.44□□□□□ -0.26
SMC4-219ENST00000487747 C2orf72A6NCS6 295 aa13.43□□□□□ -0.26
SMC4-219ENST00000487747 KIF3CO14782 793 aa13.43□□□□□ -0.26
SMC4-219ENST00000487747 FAM205CA6NFA0 338 aa13.41□□□□□ -0.26
SMC4-219ENST00000487747 HOXB1P14653 301 aaPredicted RBP13.41□□□□□ -0.26
SMC4-219ENST00000487747 DNAJC5Q9H3Z4 198 aa13.4□□□□□ -0.26
SMC4-219ENST00000487747 HS3ST6Q96QI5 342 aa13.38□□□□□ -0.27
SMC4-219ENST00000487747 DCAF8L2P0C7V8 631 aa13.37□□□□□ -0.27
SMC4-219ENST00000487747 MMRN1Q13201 1228 aa13.37□□□□□ -0.27
SMC4-219ENST00000487747 GPR153Q6NV75 609 aa13.36□□□□□ -0.27
SMC4-219ENST00000487747 SPNS2Q8IVW8 549 aa13.35□□□□□ -0.27
SMC4-219ENST00000487747 RIMBP2O15034 1052 aa13.33□□□□□ -0.28
SMC4-219ENST00000487747 KHSRPQ92945 711 aaKnown RBP eCLIP13.33□□□□□ -0.283e-15■■■■■ 43.1
SMC4-219ENST00000487747 ARSIQ5FYB1 569 aa13.32□□□□□ -0.28
SMC4-219ENST00000487747 TMC2Q8TDI7 906 aa13.31□□□□□ -0.28
SMC4-219ENST00000487747 ZSWIM6Q9HCJ5 1215 aa13.3□□□□□ -0.28
SMC4-219ENST00000487747 KRTAP3-3Q9BYR6 98 aa13.28□□□□□ -0.28
SMC4-219ENST00000487747 KRTAP3-2Q9BYR7 98 aa13.28□□□□□ -0.28
SMC4-219ENST00000487747 ERBB3P21860 1342 aa13.28□□□□□ -0.28
SMC4-219ENST00000487747 GTPBP6O43824 516 aaPredicted RBP13.27□□□□□ -0.29
SMC4-219ENST00000487747 VARS2Q5ST30 1063 aaKnown RBP13.25□□□□□ -0.29
SMC4-219ENST00000487747 GPHNQ9NQX3 736 aaPredicted RBP13.22□□□□□ -0.29
SMC4-219ENST00000487747 RTN4Q9NQC3 1192 aaKnown RBP13.21□□□□□ -0.29
SMC4-219ENST00000487747 DSG2Q14126 1118 aa13.2□□□□□ -0.3
SMC4-219ENST00000487747 SLC34A2O95436 690 aa13.19□□□□□ -0.3
SMC4-219ENST00000487747 FOXK1P85037 733 aa13.19□□□□□ -0.3
SMC4-219ENST00000487747 RYDENQ9NUL5 291 aaKnown RBP13.19□□□□□ -0.3
SMC4-219ENST00000487747 PCDHGA4Q9Y5G9 962 aa13.19□□□□□ -0.3
SMC4-219ENST00000487747 NUDT7P0C024 238 aa13.18□□□□□ -0.3
SMC4-219ENST00000487747 PLPP6Q8IY26 295 aa13.18□□□□□ -0.3
SMC4-219ENST00000487747 NCKAP5LQ9HCH0 1330 aa13.14□□□□□ -0.31
SMC4-219ENST00000487747 ZNF316A6NFI3 1004 aaPredicted RBP13.14□□□□□ -0.31
SMC4-219ENST00000487747 CRISPLD2Q9H0B8 497 aa13.14□□□□□ -0.31
SMC4-219ENST00000487747 AMER1Q5JTC6 1135 aaPredicted RBP13.13□□□□□ -0.31
SMC4-219ENST00000487747 ZNF687Q8N1G0 1237 aa13.11□□□□□ -0.31
SMC4-219ENST00000487747 PTCD2Q8WV60 388 aaKnown RBP13.1□□□□□ -0.31
SMC4-219ENST00000487747 LHX6Q9UPM6 363 aa13.1□□□□□ -0.31
SMC4-219ENST00000487747 KDM4FA0A1W2PPD8 638 aa13.09□□□□□ -0.31
SMC4-219ENST00000487747 CADPS2Q86UW7 1296 aa13.07□□□□□ -0.32
SMC4-219ENST00000487747 PPP1R15BQ5SWA1 713 aa13.04□□□□□ -0.32
SMC4-219ENST00000487747 PDE4AP27815 886 aa13.02□□□□□ -0.33
SMC4-219ENST00000487747 POTEEQ6S8J3 1075 aa13.02□□□□□ -0.33
SMC4-219ENST00000487747 BBXQ8WY36 941 aaPredicted RBP13.02□□□□□ -0.33
SMC4-219ENST00000487747 UPF1Q92900 1129 aaKnown RBP eCLIP13.02□□□□□ -0.331e-11■■■■□ 26.2
SMC4-219ENST00000487747 LARP6Q9BRS8 491 aaKnown RBP13.02□□□□□ -0.33
SMC4-219ENST00000487747 OXER1Q8TDS5 423 aa13□□□□□ -0.33
SMC4-219ENST00000487747 AXIN2Q9Y2T1 843 aa12.98□□□□□ -0.33
SMC4-219ENST00000487747 DDX27Q96GQ7 796 aaKnown RBP12.96□□□□□ -0.33
SMC4-219ENST00000487747 MFSD10Q14728 455 aa12.95□□□□□ -0.34
SMC4-219ENST00000487747 TBC1D12O60347 775 aa12.94□□□□□ -0.34
SMC4-219ENST00000487747 ANKRD13DQ6ZTN6 518 aa12.94□□□□□ -0.34
SMC4-219ENST00000487747 LSM11P83369 360 aaKnown RBP eCLIP12.91□□□□□ -0.347e-97■■■■■ 245.7
SMC4-219ENST00000487747 EMILIN3Q9NT22 766 aa12.9□□□□□ -0.34
SMC4-219ENST00000487747 SPRYD3Q8NCJ5 442 aa12.88□□□□□ -0.35
SMC4-219ENST00000487747 PBX2P40425 430 aa12.87□□□□□ -0.35
SMC4-219ENST00000487747 PSDA5PKW4 1024 aaPredicted RBP12.85□□□□□ -0.35
SMC4-219ENST00000487747 PSEN2P49810 448 aa12.85□□□□□ -0.35
SMC4-219ENST00000487747 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.84□□□□□ -0.35
SMC4-219ENST00000487747 ARHGAP33O14559 1287 aa12.83□□□□□ -0.36
SMC4-219ENST00000487747 EVI5O60447 810 aa12.83□□□□□ -0.36
SMC4-219ENST00000487747 PPP4R3BQ5MIZ7 849 aa12.83□□□□□ -0.36
SMC4-219ENST00000487747 DMRTA1Q5VZB9 504 aa12.83□□□□□ -0.36
SMC4-219ENST00000487747 PAXIP1Q6ZW49 1069 aaPredicted RBP12.83□□□□□ -0.36
SMC4-219ENST00000487747 CFAP44Q96MT7 982 aa12.83□□□□□ -0.36
SMC4-219ENST00000487747 MYT1LQ9UL68 1186 aa12.83□□□□□ -0.36
SMC4-219ENST00000487747 ANO8Q9HCE9 1232 aaPredicted RBP12.82□□□□□ -0.36
SMC4-219ENST00000487747 RNF166Q96A37 237 aaPredicted RBP12.81□□□□□ -0.36
SMC4-219ENST00000487747 MAP3K9P80192 1104 aa12.8□□□□□ -0.36
SMC4-219ENST00000487747 ZNF454Q8N9F8 522 aa12.8□□□□□ -0.36
SMC4-219ENST00000487747 FOSBP53539 338 aa12.78□□□□□ -0.36
SMC4-219ENST00000487747 CAMK2BQ13554 666 aa12.77□□□□□ -0.37
SMC4-219ENST00000487747 ADGRD1Q6QNK2 874 aa12.76□□□□□ -0.37
SMC4-219ENST00000487747 KCNK17Q96T54 332 aa12.76□□□□□ -0.37
SMC4-219ENST00000487747 PTGER2P43116 358 aa12.72□□□□□ -0.37
SMC4-219ENST00000487747 BCL2L12Q9HB09 334 aa12.72□□□□□ -0.37
SMC4-219ENST00000487747 DPYSL4O14531 572 aa12.71□□□□□ -0.37
SMC4-219ENST00000487747 JPH4Q96JJ6 628 aa12.71□□□□□ -0.37
SMC4-219ENST00000487747 HRO43593 1189 aa12.7□□□□□ -0.38
SMC4-219ENST00000487747 ADAM33Q9BZ11 813 aa12.7□□□□□ -0.38
SMC4-219ENST00000487747 PCDHGA10Q9Y5H3 936 aa12.69□□□□□ -0.38
SMC4-219ENST00000487747 TK2O00142 265 aa12.68□□□□□ -0.38
SMC4-219ENST00000487747 ZDHHC16Q969W1 377 aa12.67□□□□□ -0.38
SMC4-219ENST00000487747 VPS9D1Q9Y2B5 631 aa12.64□□□□□ -0.39
SMC4-219ENST00000487747 PTPREP23469 700 aa12.63□□□□□ -0.39
SMC4-219ENST00000487747 KCNH8Q96L42 1107 aa12.61□□□□□ -0.39
SMC4-219ENST00000487747 ZBED2Q9BTP6 218 aa12.6□□□□□ -0.39
SMC4-219ENST00000487747 TSHZ2Q9NRE2 1034 aa12.6□□□□□ -0.39
SMC4-219ENST00000487747 PHF14O94880 888 aa12.59□□□□□ -0.39
SMC4-219ENST00000487747 E2F4Q16254 413 aa12.58□□□□□ -0.4
SMC4-219ENST00000487747 DDX12PQ92771 950 aa12.58□□□□□ -0.4
SMC4-219ENST00000487747 COL9A1P20849 921 aa12.57□□□□□ -0.4
SMC4-219ENST00000487747 TYW1BQ6NUM6 668 aa12.56□□□□□ -0.4
SMC4-219ENST00000487747 SLC4A5Q9BY07 1137 aa12.56□□□□□ -0.4
SMC4-219ENST00000487747 BHMG1C9JSJ3 638 aaPredicted RBP12.55□□□□□ -0.4
SMC4-219ENST00000487747 WDR70Q9NW82 654 aa12.55□□□□□ -0.4
SMC4-219ENST00000487747 PDIA6Q15084 440 aa12.54□□□□□ -0.4
SMC4-219ENST00000487747 FBXW7Q969H0 707 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms