RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 AKNAQ7Z591 1439 aa14.1□□□□□ -0.15
SF3B1-211ENST00000487698 MYO5CQ9NQX4 1742 aa14.09□□□□□ -0.15
SF3B1-211ENST00000487698 DAPK1P53355 1430 aa14.09□□□□□ -0.15
SF3B1-211ENST00000487698 CFDP1Q9UEE9 299 aaPredicted RBP14.08□□□□□ -0.16
SF3B1-211ENST00000487698 ABCC5O15440 1437 aa14.07□□□□□ -0.16
SF3B1-211ENST00000487698 NAIPQ13075 1403 aa14.07□□□□□ -0.16
SF3B1-211ENST00000487698 ZNF644Q9H582 1327 aaPredicted RBP14.07□□□□□ -0.16
SF3B1-211ENST00000487698 ADGBQ8N7X0 1667 aa14.06□□□□□ -0.16
SF3B1-211ENST00000487698 SAMD9LQ8IVG5 1584 aa14.06□□□□□ -0.16
SF3B1-211ENST00000487698 WDR7Q9Y4E6 1490 aa14.05□□□□□ -0.16
SF3B1-211ENST00000487698 CLSPNQ9HAW4 1339 aa14.04□□□□□ -0.16
SF3B1-211ENST00000487698 ARHGEF5Q12774 1597 aa14.04□□□□□ -0.16
SF3B1-211ENST00000487698 ROCK1Q13464 1354 aa14.04□□□□□ -0.16
SF3B1-211ENST00000487698 RIMBP3CA6NJZ7 1639 aa14.02□□□□□ -0.16
SF3B1-211ENST00000487698 RIMBP3BA6NNM3 1639 aa14.02□□□□□ -0.16
SF3B1-211ENST00000487698 RIMBP3Q9UFD9 1639 aa14.02□□□□□ -0.16
SF3B1-211ENST00000487698 ABCA9Q8IUA7 1624 aa14.01□□□□□ -0.17
SF3B1-211ENST00000487698 ADGRL2O95490 1459 aa14.01□□□□□ -0.17
SF3B1-211ENST00000487698 SHANK2Q9UPX8 1470 aa14.01□□□□□ -0.17
SF3B1-211ENST00000487698 MAPKBP1O60336 1514 aa14.01□□□□□ -0.17
SF3B1-211ENST00000487698 ARAP3Q8WWN8 1544 aa14.01□□□□□ -0.17
SF3B1-211ENST00000487698 ARHGAP5Q13017 1502 aa14.01□□□□□ -0.17
SF3B1-211ENST00000487698 KDM6BO15054 1643 aa14□□□□□ -0.17
SF3B1-211ENST00000487698 MBD5Q9P267 1494 aa14□□□□□ -0.17
SF3B1-211ENST00000487698 ASXL2Q76L83 1435 aa14□□□□□ -0.17
SF3B1-211ENST00000487698 PLCH2O75038 1416 aa13.99□□□□□ -0.17
SF3B1-211ENST00000487698 ZNF777Q9ULD5 760 aaPredicted RBP13.99□□□□□ -0.17
SF3B1-211ENST00000487698 CHIC2Q9UKJ5 165 aa13.98□□□□□ -0.17
SF3B1-211ENST00000487698 SYCP2Q9BX26 1530 aa13.97□□□□□ -0.17
SF3B1-211ENST00000487698 KCNH8Q96L42 1107 aa13.97□□□□□ -0.17
SF3B1-211ENST00000487698 RRP7BPQ9NSQ0 103 aa13.96□□□□□ -0.17
SF3B1-211ENST00000487698 PLEKHH2Q8IVE3 1493 aa13.96□□□□□ -0.17
SF3B1-211ENST00000487698 NCOA1Q15788 1441 aa13.96□□□□□ -0.18
SF3B1-211ENST00000487698 CCDC141Q6ZP82 1450 aa13.96□□□□□ -0.18
SF3B1-211ENST00000487698 KIAA1107Q9UPP5 1409 aa13.95□□□□□ -0.18
SF3B1-211ENST00000487698 ABCC1P33527 1531 aa13.95□□□□□ -0.18
SF3B1-211ENST00000487698 MAST1Q9Y2H9 1570 aa13.95□□□□□ -0.18
SF3B1-211ENST00000487698 C9orf84Q5VXU9 1444 aa13.94□□□□□ -0.18
SF3B1-211ENST00000487698 ARHGEF12Q9NZN5 1544 aa13.92□□□□□ -0.18
SF3B1-211ENST00000487698 ANKRD30AQ9BXX3 1397 aa13.91□□□□□ -0.18
SF3B1-211ENST00000487698 NPM1P06748 294 aaKnown RBP eCLIP13.91□□□□□ -0.18
SF3B1-211ENST00000487698 HNRNPMP52272 730 aaKnown RBP eCLIP13.9□□□□□ -0.183e-7■■■■□ 24.6
SF3B1-211ENST00000487698 RSPH4AQ5TD94 716 aa13.9□□□□□ -0.18
SF3B1-211ENST00000487698 PLXNC1O60486 1568 aa13.9□□□□□ -0.18
SF3B1-211ENST00000487698 AEBP2Q6ZN18 517 aaPredicted RBP13.9□□□□□ -0.18
SF3B1-211ENST00000487698 EFCAB2Q5VUJ9 269 aa13.89□□□□□ -0.19
SF3B1-211ENST00000487698 ACIN1Q9UKV3 1341 aaKnown RBP13.89□□□□□ -0.19
SF3B1-211ENST00000487698 DENND4BO75064 1496 aaPredicted RBP13.88□□□□□ -0.19
SF3B1-211ENST00000487698 FANCAO15360 1455 aa13.88□□□□□ -0.19
SF3B1-211ENST00000487698 TSPY4P0CV99 314 aa13.86□□□□□ -0.19
SF3B1-211ENST00000487698 TSPY10P0CW01 314 aa13.86□□□□□ -0.19
SF3B1-211ENST00000487698 CFAP74Q9C0B2 1584 aa13.86□□□□□ -0.19
SF3B1-211ENST00000487698 ANKRD50Q9ULJ7 1429 aa13.86□□□□□ -0.19
SF3B1-211ENST00000487698 CYB5RLQ6IPT4 315 aa13.85□□□□□ -0.19
SF3B1-211ENST00000487698 KIF15Q9NS87 1388 aa13.84□□□□□ -0.19
SF3B1-211ENST00000487698 TRAPPC8Q9Y2L5 1435 aa13.84□□□□□ -0.19
SF3B1-211ENST00000487698 MAP3K4Q9Y6R4 1608 aa13.84□□□□□ -0.19
SF3B1-211ENST00000487698 GLI2P10070 1586 aa13.83□□□□□ -0.19
SF3B1-211ENST00000487698 ZFYVE16Q7Z3T8 1539 aa13.83□□□□□ -0.2
SF3B1-211ENST00000487698 KDM5DQ9BY66 1539 aa13.83□□□□□ -0.2
SF3B1-211ENST00000487698 INO80Q9ULG1 1556 aaPredicted RBP13.82□□□□□ -0.2
SF3B1-211ENST00000487698 ADGRL1O94910 1474 aa13.82□□□□□ -0.2
SF3B1-211ENST00000487698 PZPP20742 1482 aa13.82□□□□□ -0.2
SF3B1-211ENST00000487698 CD109Q6YHK3 1445 aa13.81□□□□□ -0.2
SF3B1-211ENST00000487698 DUOX2Q9NRD8 1548 aa13.8□□□□□ -0.2
SF3B1-211ENST00000487698 TRIM52Q96A61 297 aa13.8□□□□□ -0.2
SF3B1-211ENST00000487698 UNC13BO14795 1591 aa13.8□□□□□ -0.2
SF3B1-211ENST00000487698 RTEL1-TNFRSF6BF6WH68 1400 aa13.8□□□□□ -0.2
SF3B1-211ENST00000487698 DIP2BQ9P265 1576 aa13.79□□□□□ -0.2
SF3B1-211ENST00000487698 MPHOSPH9Q99550 1183 aa13.79□□□□□ -0.2
SF3B1-211ENST00000487698 ATP7AQ04656 1500 aa13.78□□□□□ -0.2
SF3B1-211ENST00000487698 SIN3AQ96ST3 1273 aa13.78□□□□□ -0.2
SF3B1-211ENST00000487698 SCAPERQ9BY12 1400 aa13.78□□□□□ -0.2
SF3B1-211ENST00000487698 KDM5CP41229 1560 aa13.77□□□□□ -0.21
SF3B1-211ENST00000487698 NEO1Q92859 1461 aa13.76□□□□□ -0.21
SF3B1-211ENST00000487698 ERBINQ96RT1 1412 aa13.76□□□□□ -0.21
SF3B1-211ENST00000487698 TIMELESSQ9UNS1 1208 aa13.76□□□□□ -0.21
SF3B1-211ENST00000487698 MAGI2Q86UL8 1455 aa13.75□□□□□ -0.21
SF3B1-211ENST00000487698 ZNF518AQ6AHZ1 1483 aa13.75□□□□□ -0.21
SF3B1-211ENST00000487698 KIDINS220Q9ULH0 1771 aa13.75□□□□□ -0.21
SF3B1-211ENST00000487698 SPAG9O60271 1321 aaKnown RBP13.74□□□□□ -0.21
SF3B1-211ENST00000487698 AFAP1Q8N556 730 aa13.74□□□□□ -0.21
SF3B1-211ENST00000487698 POGZQ7Z3K3 1410 aa13.74□□□□□ -0.21
SF3B1-211ENST00000487698 IQGAP3Q86VI3 1631 aa13.74□□□□□ -0.21
SF3B1-211ENST00000487698 ANKRD30BQ9BXX2 1392 aa13.74□□□□□ -0.21
SF3B1-211ENST00000487698 PPRC1Q5VV67 1664 aaKnown RBP13.73□□□□□ -0.21
SF3B1-211ENST00000487698 FAM135AQ9P2D6 1515 aa13.72□□□□□ -0.21
SF3B1-211ENST00000487698 DEPDC5O75140 1603 aa13.72□□□□□ -0.21
SF3B1-211ENST00000487698 SLC4A1APQ9BWU0 796 aaKnown RBP13.72□□□□□ -0.21
SF3B1-211ENST00000487698 KIF13AQ9H1H9 1805 aa13.72□□□□□ -0.21
SF3B1-211ENST00000487698 NEUROD1Q13562 356 aa13.72□□□□□ -0.21
SF3B1-211ENST00000487698 NUP155O75694 1391 aa13.71□□□□□ -0.21
SF3B1-211ENST00000487698 EIF2AK4Q9P2K8 1649 aaKnown RBP13.71□□□□□ -0.21
SF3B1-211ENST00000487698 RICTORQ6R327 1708 aa13.71□□□□□ -0.21
SF3B1-211ENST00000487698 HECW2Q9P2P5 1572 aa13.71□□□□□ -0.22
SF3B1-211ENST00000487698 RPRD2Q5VT52 1461 aaKnown RBP13.7□□□□□ -0.22
SF3B1-211ENST00000487698 MLH3Q9UHC1 1453 aa13.69□□□□□ -0.22
SF3B1-211ENST00000487698 FOXD1Q16676 465 aa13.69□□□□□ -0.22
SF3B1-211ENST00000487698 TONSLQ96HA7 1378 aa13.68□□□□□ -0.22
SF3B1-211ENST00000487698 TSPOAP1O95153 1857 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms