RNA–Protein interactions for RNA: ENST00000486235.5

TMEM39A-209, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-209ENST00000486235 POTEBQ6S5H4 581 aa13.14□□□□□ -0.31
TMEM39A-209ENST00000486235 PHF8Q9UPP1 1060 aa13.14□□□□□ -0.31
TMEM39A-209ENST00000486235 SOX12O15370 315 aa13.12□□□□□ -0.31
TMEM39A-209ENST00000486235 HS3ST6Q96QI5 342 aa13.12□□□□□ -0.31
TMEM39A-209ENST00000486235 SPNS2Q8IVW8 549 aa13.11□□□□□ -0.31
TMEM39A-209ENST00000486235 MICALL2Q8IY33 904 aa13.11□□□□□ -0.31
TMEM39A-209ENST00000486235 MS4A4AQ96JQ5 239 aa13.11□□□□□ -0.31
TMEM39A-209ENST00000486235 ZNF710Q8N1W2 664 aa13.1□□□□□ -0.31
TMEM39A-209ENST00000486235 TMEM92Q6UXU6 159 aa13.08□□□□□ -0.32
TMEM39A-209ENST00000486235 MMRN1Q13201 1228 aa13.07□□□□□ -0.32
TMEM39A-209ENST00000486235 BCL11BQ9C0K0 894 aaPredicted RBP13.07□□□□□ -0.32
TMEM39A-209ENST00000486235 DOK7Q18PE1 504 aa13.05□□□□□ -0.32
TMEM39A-209ENST00000486235 STK24Q9Y6E0 443 aa13.04□□□□□ -0.32
TMEM39A-209ENST00000486235 ECM2O94769 699 aaPredicted RBP13.02□□□□□ -0.33
TMEM39A-209ENST00000486235 HOXB1P14653 301 aaPredicted RBP13.02□□□□□ -0.33
TMEM39A-209ENST00000486235 KRTAP3-3Q9BYR6 98 aa13.02□□□□□ -0.33
TMEM39A-209ENST00000486235 KRTAP3-2Q9BYR7 98 aa13.02□□□□□ -0.33
TMEM39A-209ENST00000486235 ERBB3P21860 1342 aa12.99□□□□□ -0.33
TMEM39A-209ENST00000486235 NLRP6P59044 892 aa12.99□□□□□ -0.33
TMEM39A-209ENST00000486235 STK25O00506 426 aa12.98□□□□□ -0.33
TMEM39A-209ENST00000486235 TAOK2Q9UL54 1235 aa12.98□□□□□ -0.33
TMEM39A-209ENST00000486235 RIMBP2O15034 1052 aa12.97□□□□□ -0.33
TMEM39A-209ENST00000486235 FBXO22Q8NEZ5 403 aa12.96□□□□□ -0.33
TMEM39A-209ENST00000486235 MFRPQ9BY79 579 aa12.94□□□□□ -0.34
TMEM39A-209ENST00000486235 RGL2O15211 777 aa12.93□□□□□ -0.34
TMEM39A-209ENST00000486235 PKD2Q13563 968 aa12.93□□□□□ -0.34
TMEM39A-209ENST00000486235 VARS2Q5ST30 1063 aaKnown RBP12.92□□□□□ -0.34
TMEM39A-209ENST00000486235 ERCC6Q03468 1493 aa12.91□□□□□ -0.34
TMEM39A-209ENST00000486235 CUX2O14529 1486 aa12.9□□□□□ -0.34
TMEM39A-209ENST00000486235 ARSIQ5FYB1 569 aa12.87□□□□□ -0.35
TMEM39A-209ENST00000486235 GPR153Q6NV75 609 aa12.87□□□□□ -0.35
TMEM39A-209ENST00000486235 NCAPD3P42695 1498 aa12.85□□□□□ -0.35
TMEM39A-209ENST00000486235 ZSWIM6Q9HCJ5 1215 aa12.85□□□□□ -0.35
TMEM39A-209ENST00000486235 KHSRPQ92945 711 aaKnown RBP eCLIP12.84□□□□□ -0.354e-10■■□□□ 13.8
TMEM39A-209ENST00000486235 ATAD2BQ9ULI0 1458 aa12.8□□□□□ -0.36
TMEM39A-209ENST00000486235 C2orf72A6NCS6 295 aa12.8□□□□□ -0.36
TMEM39A-209ENST00000486235 NESP48681 1621 aa12.77□□□□□ -0.37
TMEM39A-209ENST00000486235 ZNF687Q8N1G0 1237 aa12.76□□□□□ -0.37
TMEM39A-209ENST00000486235 KIF3CO14782 793 aa12.75□□□□□ -0.37
TMEM39A-209ENST00000486235 PPP1R37O75864 691 aa12.75□□□□□ -0.37
TMEM39A-209ENST00000486235 SMARCA2P51531 1590 aa12.73□□□□□ -0.37
TMEM39A-209ENST00000486235 SMARCA4P51532 1647 aa12.73□□□□□ -0.37
TMEM39A-209ENST00000486235 HMGXB3Q12766 1538 aa12.72□□□□□ -0.37
TMEM39A-209ENST00000486235 ZNF316A6NFI3 1004 aaPredicted RBP12.72□□□□□ -0.37
TMEM39A-209ENST00000486235 TMC2Q8TDI7 906 aa12.71□□□□□ -0.37
TMEM39A-209ENST00000486235 NUDT7P0C024 238 aa12.7□□□□□ -0.38
TMEM39A-209ENST00000486235 ANKRD13DQ6ZTN6 518 aa12.68□□□□□ -0.38
TMEM39A-209ENST00000486235 BAZ1BQ9UIG0 1483 aaKnown RBP12.67□□□□□ -0.38
TMEM39A-209ENST00000486235 RNF166Q96A37 237 aaPredicted RBP12.67□□□□□ -0.38
TMEM39A-209ENST00000486235 MYT1LQ9UL68 1186 aa12.65□□□□□ -0.38
TMEM39A-209ENST00000486235 PCDHGA4Q9Y5G9 962 aa12.65□□□□□ -0.38
TMEM39A-209ENST00000486235 LHX6Q9UPM6 363 aa12.63□□□□□ -0.39
TMEM39A-209ENST00000486235 THOC2Q8NI27 1593 aaKnown RBP12.63□□□□□ -0.39
TMEM39A-209ENST00000486235 BAZ1AQ9NRL2 1556 aaPredicted RBP12.62□□□□□ -0.39
TMEM39A-209ENST00000486235 CHGAP10645 457 aaKnown RBP12.6□□□□□ -0.39
TMEM39A-209ENST00000486235 SLC34A2O95436 690 aa12.59□□□□□ -0.39
TMEM39A-209ENST00000486235 HS6ST3Q8IZP7 471 aa12.59□□□□□ -0.39
TMEM39A-209ENST00000486235 AXIN2Q9Y2T1 843 aa12.59□□□□□ -0.39
TMEM39A-209ENST00000486235 LAMC3Q9Y6N6 1575 aa12.58□□□□□ -0.4
TMEM39A-209ENST00000486235 LSM11P83369 360 aaKnown RBP eCLIP12.57□□□□□ -0.4
TMEM39A-209ENST00000486235 PEG3Q9GZU2 1588 aa12.56□□□□□ -0.4
TMEM39A-209ENST00000486235 MROH2BQ7Z745 1585 aa12.55□□□□□ -0.4
TMEM39A-209ENST00000486235 KIF21AQ7Z4S6 1674 aa12.54□□□□□ -0.4
TMEM39A-209ENST00000486235 PDS5BQ9NTI5 1447 aa12.54□□□□□ -0.4
TMEM39A-209ENST00000486235 POTEEQ6S8J3 1075 aa12.54□□□□□ -0.4
TMEM39A-209ENST00000486235 PLPP6Q8IY26 295 aa12.52□□□□□ -0.41
TMEM39A-209ENST00000486235 PBX2P40425 430 aa12.49□□□□□ -0.41
TMEM39A-209ENST00000486235 PTGER2P43116 358 aa12.49□□□□□ -0.41
TMEM39A-209ENST00000486235 DSG2Q14126 1118 aa12.49□□□□□ -0.41
TMEM39A-209ENST00000486235 NKX1-1Q15270 411 aaPredicted RBP12.49□□□□□ -0.41
TMEM39A-209ENST00000486235 GPHNQ9NQX3 736 aaPredicted RBP12.49□□□□□ -0.41
TMEM39A-209ENST00000486235 FOXK1P85037 733 aa12.48□□□□□ -0.41
TMEM39A-209ENST00000486235 CADPSQ9ULU8 1353 aa12.47□□□□□ -0.41
TMEM39A-209ENST00000486235 PTCD2Q8WV60 388 aaKnown RBP12.47□□□□□ -0.41
TMEM39A-209ENST00000486235 MRC2Q9UBG0 1479 aa12.46□□□□□ -0.42
TMEM39A-209ENST00000486235 KDM4FA0A1W2PPD8 638 aa12.44□□□□□ -0.42
TMEM39A-209ENST00000486235 WDR62O43379 1518 aa12.42□□□□□ -0.42
TMEM39A-209ENST00000486235 ARHGAP33O14559 1287 aa12.41□□□□□ -0.42
TMEM39A-209ENST00000486235 PSEN2P49810 448 aa12.4□□□□□ -0.42
TMEM39A-209ENST00000486235 PSDA5PKW4 1024 aaPredicted RBP12.39□□□□□ -0.43
TMEM39A-209ENST00000486235 TBC1D12O60347 775 aa12.39□□□□□ -0.43
TMEM39A-209ENST00000486235 UPF1Q92900 1129 aaKnown RBP eCLIP12.39□□□□□ -0.43
TMEM39A-209ENST00000486235 DMRTA1Q5VZB9 504 aa12.38□□□□□ -0.43
TMEM39A-209ENST00000486235 ADGRD1Q6QNK2 874 aa12.38□□□□□ -0.43
TMEM39A-209ENST00000486235 WIZO95785 1651 aa12.38□□□□□ -0.43
TMEM39A-209ENST00000486235 CEP164Q9UPV0 1460 aa12.36□□□□□ -0.43
TMEM39A-209ENST00000486235 PPP4R3BQ5MIZ7 849 aa12.34□□□□□ -0.43
TMEM39A-209ENST00000486235 FANCD2Q9BXW9 1451 aa12.34□□□□□ -0.43
TMEM39A-209ENST00000486235 RYDENQ9NUL5 291 aaKnown RBP12.33□□□□□ -0.44
TMEM39A-209ENST00000486235 OXER1Q8TDS5 423 aa12.31□□□□□ -0.44
TMEM39A-209ENST00000486235 KCNK17Q96T54 332 aa12.31□□□□□ -0.44
TMEM39A-209ENST00000486235 CRISPLD2Q9H0B8 497 aa12.31□□□□□ -0.44
TMEM39A-209ENST00000486235 PPP1R15BQ5SWA1 713 aa12.3□□□□□ -0.44
TMEM39A-209ENST00000486235 NCKAP5LQ9HCH0 1330 aa12.29□□□□□ -0.44
TMEM39A-209ENST00000486235 CFTRP13569 1480 aa12.27□□□□□ -0.44
TMEM39A-209ENST00000486235 GTPBP6O43824 516 aaPredicted RBP12.27□□□□□ -0.45
TMEM39A-209ENST00000486235 TK2O00142 265 aa12.26□□□□□ -0.45
TMEM39A-209ENST00000486235 ZNF454Q8N9F8 522 aa12.26□□□□□ -0.45
TMEM39A-209ENST00000486235 HCSTQ9UBK5 93 aa12.26□□□□□ -0.45
TMEM39A-209ENST00000486235 HRO43593 1189 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms