RNA–Protein interactions for RNA: ENST00000484275.1

SCAF11-207, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-207ENST00000484275 POTEBQ6S5H4 581 aa14.02□□□□□ -0.17
SCAF11-207ENST00000484275 DOK7Q18PE1 504 aa14.01□□□□□ -0.17
SCAF11-207ENST00000484275 NKX1-1Q15270 411 aaPredicted RBP14□□□□□ -0.17
SCAF11-207ENST00000484275 KIF3CO14782 793 aa13.98□□□□□ -0.17
SCAF11-207ENST00000484275 HOXB1P14653 301 aaPredicted RBP13.98□□□□□ -0.17
SCAF11-207ENST00000484275 ZNF710Q8N1W2 664 aa13.98□□□□□ -0.17
SCAF11-207ENST00000484275 C2orf72A6NCS6 295 aa13.96□□□□□ -0.17
SCAF11-207ENST00000484275 FAM205CA6NFA0 338 aa13.96□□□□□ -0.17
SCAF11-207ENST00000484275 DNAJC5Q9H3Z4 198 aa13.96□□□□□ -0.17
SCAF11-207ENST00000484275 HS3ST6Q96QI5 342 aa13.95□□□□□ -0.18
SCAF11-207ENST00000484275 RIMBP2O15034 1052 aa13.9□□□□□ -0.18
SCAF11-207ENST00000484275 GPR153Q6NV75 609 aa13.9□□□□□ -0.18
SCAF11-207ENST00000484275 ZSWIM6Q9HCJ5 1215 aa13.88□□□□□ -0.19
SCAF11-207ENST00000484275 ARSIQ5FYB1 569 aa13.85□□□□□ -0.19
SCAF11-207ENST00000484275 TMC2Q8TDI7 906 aa13.84□□□□□ -0.19
SCAF11-207ENST00000484275 KHSRPQ92945 711 aaKnown RBP eCLIP13.84□□□□□ -0.192e-8■■■□□ 15.1
SCAF11-207ENST00000484275 KRTAP3-3Q9BYR6 98 aa13.84□□□□□ -0.19
SCAF11-207ENST00000484275 KRTAP3-2Q9BYR7 98 aa13.84□□□□□ -0.19
SCAF11-207ENST00000484275 ERBB3P21860 1342 aa13.82□□□□□ -0.2
SCAF11-207ENST00000484275 DCAF8L2P0C7V8 631 aa13.81□□□□□ -0.2
SCAF11-207ENST00000484275 VARS2Q5ST30 1063 aaKnown RBP13.79□□□□□ -0.2
SCAF11-207ENST00000484275 GTPBP6O43824 516 aaPredicted RBP13.77□□□□□ -0.21
SCAF11-207ENST00000484275 SPNS2Q8IVW8 549 aa13.77□□□□□ -0.21
SCAF11-207ENST00000484275 SLC34A2O95436 690 aa13.75□□□□□ -0.21
SCAF11-207ENST00000484275 GPHNQ9NQX3 736 aaPredicted RBP13.74□□□□□ -0.21
SCAF11-207ENST00000484275 RYDENQ9NUL5 291 aaKnown RBP13.73□□□□□ -0.21
SCAF11-207ENST00000484275 FOXK1P85037 733 aa13.72□□□□□ -0.21
SCAF11-207ENST00000484275 PCDHGA4Q9Y5G9 962 aa13.72□□□□□ -0.21
SCAF11-207ENST00000484275 NUDT7P0C024 238 aa13.71□□□□□ -0.21
SCAF11-207ENST00000484275 DSG2Q14126 1118 aa13.71□□□□□ -0.21
SCAF11-207ENST00000484275 PLPP6Q8IY26 295 aa13.7□□□□□ -0.22
SCAF11-207ENST00000484275 ZNF316A6NFI3 1004 aaPredicted RBP13.69□□□□□ -0.22
SCAF11-207ENST00000484275 MMRN1Q13201 1228 aa13.68□□□□□ -0.22
SCAF11-207ENST00000484275 ZNF687Q8N1G0 1237 aa13.67□□□□□ -0.22
SCAF11-207ENST00000484275 CRISPLD2Q9H0B8 497 aa13.66□□□□□ -0.22
SCAF11-207ENST00000484275 NCKAP5LQ9HCH0 1330 aa13.64□□□□□ -0.23
SCAF11-207ENST00000484275 PTCD2Q8WV60 388 aaKnown RBP13.64□□□□□ -0.23
SCAF11-207ENST00000484275 RTN4Q9NQC3 1192 aaKnown RBP13.63□□□□□ -0.23
SCAF11-207ENST00000484275 LHX6Q9UPM6 363 aa13.63□□□□□ -0.23
SCAF11-207ENST00000484275 KDM4FA0A1W2PPD8 638 aa13.62□□□□□ -0.23
SCAF11-207ENST00000484275 AMER1Q5JTC6 1135 aaPredicted RBP13.6□□□□□ -0.23
SCAF11-207ENST00000484275 PPP1R15BQ5SWA1 713 aa13.56□□□□□ -0.24
SCAF11-207ENST00000484275 POTEEQ6S8J3 1075 aa13.55□□□□□ -0.24
SCAF11-207ENST00000484275 CADPS2Q86UW7 1296 aa13.54□□□□□ -0.24
SCAF11-207ENST00000484275 PDE4AP27815 886 aa13.53□□□□□ -0.24
SCAF11-207ENST00000484275 OXER1Q8TDS5 423 aa13.52□□□□□ -0.25
SCAF11-207ENST00000484275 UPF1Q92900 1129 aaKnown RBP eCLIP13.51□□□□□ -0.25
SCAF11-207ENST00000484275 BBXQ8WY36 941 aaPredicted RBP13.5□□□□□ -0.25
SCAF11-207ENST00000484275 LARP6Q9BRS8 491 aaKnown RBP13.5□□□□□ -0.25
SCAF11-207ENST00000484275 AXIN2Q9Y2T1 843 aa13.48□□□□□ -0.25
SCAF11-207ENST00000484275 TBC1D12O60347 775 aa13.47□□□□□ -0.25
SCAF11-207ENST00000484275 MFSD10Q14728 455 aa13.47□□□□□ -0.25
SCAF11-207ENST00000484275 LSM11P83369 360 aaKnown RBP eCLIP13.46□□□□□ -0.25
SCAF11-207ENST00000484275 DDX27Q96GQ7 796 aaKnown RBP13.46□□□□□ -0.25
SCAF11-207ENST00000484275 ANKRD13DQ6ZTN6 518 aa13.45□□□□□ -0.26
SCAF11-207ENST00000484275 PBX2P40425 430 aa13.43□□□□□ -0.26
SCAF11-207ENST00000484275 PSDA5PKW4 1024 aaPredicted RBP13.41□□□□□ -0.26
SCAF11-207ENST00000484275 EMILIN3Q9NT22 766 aa13.4□□□□□ -0.26
SCAF11-207ENST00000484275 MYT1LQ9UL68 1186 aa13.37□□□□□ -0.27
SCAF11-207ENST00000484275 ARHGAP33O14559 1287 aa13.36□□□□□ -0.27
SCAF11-207ENST00000484275 RNF166Q96A37 237 aaPredicted RBP13.36□□□□□ -0.27
SCAF11-207ENST00000484275 PSEN2P49810 448 aa13.35□□□□□ -0.27
SCAF11-207ENST00000484275 PPP4R3BQ5MIZ7 849 aa13.35□□□□□ -0.27
SCAF11-207ENST00000484275 DMRTA1Q5VZB9 504 aa13.34□□□□□ -0.27
SCAF11-207ENST00000484275 SPRYD3Q8NCJ5 442 aa13.34□□□□□ -0.27
SCAF11-207ENST00000484275 ANO8Q9HCE9 1232 aaPredicted RBP13.34□□□□□ -0.27
SCAF11-207ENST00000484275 EVI5O60447 810 aa13.33□□□□□ -0.28
SCAF11-207ENST00000484275 PTGER2P43116 358 aa13.31□□□□□ -0.28
SCAF11-207ENST00000484275 ZNF454Q8N9F8 522 aa13.31□□□□□ -0.28
SCAF11-207ENST00000484275 FOSBP53539 338 aa13.3□□□□□ -0.28
SCAF11-207ENST00000484275 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.3□□□□□ -0.28
SCAF11-207ENST00000484275 MAP3K9P80192 1104 aa13.29□□□□□ -0.28
SCAF11-207ENST00000484275 ADGRD1Q6QNK2 874 aa13.29□□□□□ -0.28
SCAF11-207ENST00000484275 CAMK2BQ13554 666 aa13.28□□□□□ -0.28
SCAF11-207ENST00000484275 PAXIP1Q6ZW49 1069 aaPredicted RBP13.28□□□□□ -0.28
SCAF11-207ENST00000484275 KCNK17Q96T54 332 aa13.27□□□□□ -0.29
SCAF11-207ENST00000484275 CFAP44Q96MT7 982 aa13.26□□□□□ -0.29
SCAF11-207ENST00000484275 JPH4Q96JJ6 628 aa13.24□□□□□ -0.29
SCAF11-207ENST00000484275 BCL2L12Q9HB09 334 aa13.24□□□□□ -0.29
SCAF11-207ENST00000484275 TK2O00142 265 aa13.22□□□□□ -0.29
SCAF11-207ENST00000484275 HRO43593 1189 aa13.22□□□□□ -0.29
SCAF11-207ENST00000484275 DPYSL4O14531 572 aa13.2□□□□□ -0.3
SCAF11-207ENST00000484275 ADAM33Q9BZ11 813 aa13.2□□□□□ -0.3
SCAF11-207ENST00000484275 ZDHHC16Q969W1 377 aa13.19□□□□□ -0.3
SCAF11-207ENST00000484275 PCDHGA10Q9Y5H3 936 aa13.18□□□□□ -0.3
SCAF11-207ENST00000484275 VPS9D1Q9Y2B5 631 aa13.16□□□□□ -0.3
SCAF11-207ENST00000484275 PTPREP23469 700 aa13.15□□□□□ -0.3
SCAF11-207ENST00000484275 KCNH8Q96L42 1107 aa13.14□□□□□ -0.31
SCAF11-207ENST00000484275 ZBED2Q9BTP6 218 aa13.12□□□□□ -0.31
SCAF11-207ENST00000484275 SLC4A5Q9BY07 1137 aa13.11□□□□□ -0.31
SCAF11-207ENST00000484275 PHF14O94880 888 aa13.1□□□□□ -0.31
SCAF11-207ENST00000484275 TYW1BQ6NUM6 668 aa13.08□□□□□ -0.32
SCAF11-207ENST00000484275 COL9A1P20849 921 aa13.07□□□□□ -0.32
SCAF11-207ENST00000484275 BHMG1C9JSJ3 638 aaPredicted RBP13.06□□□□□ -0.32
SCAF11-207ENST00000484275 E2F4Q16254 413 aa13.06□□□□□ -0.32
SCAF11-207ENST00000484275 PDIA6Q15084 440 aa13.05□□□□□ -0.32
SCAF11-207ENST00000484275 DDX12PQ92771 950 aa13.05□□□□□ -0.32
SCAF11-207ENST00000484275 FBXW7Q969H0 707 aa13.05□□□□□ -0.32
SCAF11-207ENST00000484275 KCTD12Q96CX2 325 aaKnown RBP13.03□□□□□ -0.32
SCAF11-207ENST00000484275 TSHZ2Q9NRE2 1034 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms