RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 ROCK1Q13464 1354 aa38.77■■■■□ 3.8
SHOX2-204ENST00000483851 ABCC5O15440 1437 aa38.77■■■■□ 3.8
SHOX2-204ENST00000483851 GCC2Q8IWJ2 1684 aa38.76■■■■□ 3.8
SHOX2-204ENST00000483851 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP38.75■■■■□ 3.79
SHOX2-204ENST00000483851 ZNF644Q9H582 1327 aaPredicted RBP38.75■■■■□ 3.79
SHOX2-204ENST00000483851 CDC42BPBQ9Y5S2 1711 aa38.7■■■■□ 3.79
SHOX2-204ENST00000483851 TTC37Q6PGP7 1564 aa38.69■■■■□ 3.78
SHOX2-204ENST00000483851 ACIN1Q9UKV3 1341 aaKnown RBP38.69■■■■□ 3.78
SHOX2-204ENST00000483851 MYO5CQ9NQX4 1742 aa38.67■■■■□ 3.78
SHOX2-204ENST00000483851 CROCC2H7BZ55 1655 aa38.66■■■■□ 3.78
SHOX2-204ENST00000483851 ZNF777Q9ULD5 760 aaPredicted RBP38.63■■■■□ 3.77
SHOX2-204ENST00000483851 WDR7Q9Y4E6 1490 aa38.63■■■■□ 3.77
SHOX2-204ENST00000483851 ARHGEF5Q12774 1597 aa38.62■■■■□ 3.77
SHOX2-204ENST00000483851 ADGBQ8N7X0 1667 aa38.61■■■■□ 3.77
SHOX2-204ENST00000483851 SHANK2Q9UPX8 1470 aa38.61■■■■□ 3.77
SHOX2-204ENST00000483851 CHIC2Q9UKJ5 165 aa38.6■■■■□ 3.77
SHOX2-204ENST00000483851 ADGRL2O95490 1459 aa38.59■■■■□ 3.77
SHOX2-204ENST00000483851 RSPH4AQ5TD94 716 aa38.57■■■■□ 3.76
SHOX2-204ENST00000483851 SAMD9LQ8IVG5 1584 aa38.57■■■■□ 3.76
SHOX2-204ENST00000483851 RRP7BPQ9NSQ0 103 aa38.56■■■■□ 3.76
SHOX2-204ENST00000483851 PLCH2O75038 1416 aa38.56■■■■□ 3.76
SHOX2-204ENST00000483851 ARHGAP5Q13017 1502 aa38.55■■■■□ 3.76
SHOX2-204ENST00000483851 ARAP3Q8WWN8 1544 aa38.55■■■■□ 3.76
SHOX2-204ENST00000483851 KCNH8Q96L42 1107 aa38.55■■■■□ 3.76
SHOX2-204ENST00000483851 PLEKHH2Q8IVE3 1493 aa38.55■■■■□ 3.76
SHOX2-204ENST00000483851 MAPKBP1O60336 1514 aa38.55■■■■□ 3.76
SHOX2-204ENST00000483851 NPM1P06748 294 aaKnown RBP eCLIP38.52■■■■□ 3.76
SHOX2-204ENST00000483851 MBD5Q9P267 1494 aa38.51■■■■□ 3.76
SHOX2-204ENST00000483851 NCOA1Q15788 1441 aa38.5■■■■□ 3.75
SHOX2-204ENST00000483851 KIAA1107Q9UPP5 1409 aa38.49■■■■□ 3.75
SHOX2-204ENST00000483851 ASXL2Q76L83 1435 aa38.48■■■■□ 3.75
SHOX2-204ENST00000483851 ANKRD30AQ9BXX3 1397 aa38.46■■■■□ 3.75
SHOX2-204ENST00000483851 ABCA9Q8IUA7 1624 aa38.46■■■■□ 3.75
SHOX2-204ENST00000483851 CCDC141Q6ZP82 1450 aa38.45■■■■□ 3.75
SHOX2-204ENST00000483851 C9orf84Q5VXU9 1444 aa38.42■■■■□ 3.74
SHOX2-204ENST00000483851 TSPY4P0CV99 314 aa38.42■■■■□ 3.74
SHOX2-204ENST00000483851 TSPY10P0CW01 314 aa38.42■■■■□ 3.74
SHOX2-204ENST00000483851 EFCAB2Q5VUJ9 269 aa38.41■■■■□ 3.74
SHOX2-204ENST00000483851 KDM6BO15054 1643 aa38.39■■■■□ 3.74
SHOX2-204ENST00000483851 HNRNPMP52272 730 aaKnown RBP eCLIP38.37■■■■□ 3.73
SHOX2-204ENST00000483851 SYCP2Q9BX26 1530 aa38.36■■■■□ 3.73
SHOX2-204ENST00000483851 MAST1Q9Y2H9 1570 aa38.36■■■■□ 3.73
SHOX2-204ENST00000483851 RIMBP3CA6NJZ7 1639 aa38.36■■■■□ 3.73
SHOX2-204ENST00000483851 RIMBP3BA6NNM3 1639 aa38.36■■■■□ 3.73
SHOX2-204ENST00000483851 RIMBP3Q9UFD9 1639 aa38.36■■■■□ 3.73
SHOX2-204ENST00000483851 ABCC1P33527 1531 aa38.3■■■■□ 3.72
SHOX2-204ENST00000483851 TIMELESSQ9UNS1 1208 aa38.26■■■■□ 3.72
SHOX2-204ENST00000483851 ANKRD50Q9ULJ7 1429 aa38.24■■■■□ 3.71
SHOX2-204ENST00000483851 TRIM52Q96A61 297 aa38.22■■■■□ 3.71
SHOX2-204ENST00000483851 ARHGEF12Q9NZN5 1544 aa38.22■■■■□ 3.71
SHOX2-204ENST00000483851 FANCAO15360 1455 aa38.19■■■■□ 3.7
SHOX2-204ENST00000483851 PLXNC1O60486 1568 aa38.19■■■■□ 3.7
SHOX2-204ENST00000483851 KIF15Q9NS87 1388 aa38.19■■■■□ 3.7
SHOX2-204ENST00000483851 MPHOSPH9Q99550 1183 aa38.15■■■■□ 3.7
SHOX2-204ENST00000483851 CYB5RLQ6IPT4 315 aa38.15■■■■□ 3.7
SHOX2-204ENST00000483851 DENND4BO75064 1496 aaPredicted RBP38.13■■■■□ 3.69
SHOX2-204ENST00000483851 CFAP74Q9C0B2 1584 aa38.1■■■■□ 3.69
SHOX2-204ENST00000483851 RTEL1-TNFRSF6BF6WH68 1400 aa38.08■■■■□ 3.69
SHOX2-204ENST00000483851 SIN3AQ96ST3 1273 aa38.07■■■■□ 3.68
SHOX2-204ENST00000483851 TRAPPC8Q9Y2L5 1435 aa38.06■■■■□ 3.68
SHOX2-204ENST00000483851 CD109Q6YHK3 1445 aa38.06■■■■□ 3.68
SHOX2-204ENST00000483851 KDM5DQ9BY66 1539 aa38.05■■■■□ 3.68
SHOX2-204ENST00000483851 PZPP20742 1482 aa38.04■■■■□ 3.68
SHOX2-204ENST00000483851 ADGRL1O94910 1474 aa38.02■■■■□ 3.68
SHOX2-204ENST00000483851 DUOX2Q9NRD8 1548 aa38.02■■■■□ 3.68
SHOX2-204ENST00000483851 NEUROD1Q13562 356 aa37.99■■■■□ 3.67
SHOX2-204ENST00000483851 SLC4A1APQ9BWU0 796 aaKnown RBP37.98■■■■□ 3.67
SHOX2-204ENST00000483851 GLI2P10070 1586 aa37.98■■■■□ 3.67
SHOX2-204ENST00000483851 SCAPERQ9BY12 1400 aa37.96■■■■□ 3.67
SHOX2-204ENST00000483851 ERBINQ96RT1 1412 aa37.95■■■■□ 3.67
SHOX2-204ENST00000483851 SPAG9O60271 1321 aaKnown RBP37.95■■■■□ 3.67
SHOX2-204ENST00000483851 ZFYVE16Q7Z3T8 1539 aa37.94■■■■□ 3.66
SHOX2-204ENST00000483851 ZNF316A6NFI3 1004 aaPredicted RBP37.92■■■■□ 3.66
SHOX2-204ENST00000483851 ANKRD30BQ9BXX2 1392 aa37.91■■■■□ 3.66
SHOX2-204ENST00000483851 INO80Q9ULG1 1556 aaPredicted RBP37.91■■■■□ 3.66
SHOX2-204ENST00000483851 NEO1Q92859 1461 aa37.91■■■■□ 3.66
SHOX2-204ENST00000483851 UNC13BO14795 1591 aa37.91■■■■□ 3.66
SHOX2-204ENST00000483851 TONSLQ96HA7 1378 aa37.9■■■■□ 3.66
SHOX2-204ENST00000483851 MAP3K4Q9Y6R4 1608 aa37.9■■■■□ 3.66
SHOX2-204ENST00000483851 NUP155O75694 1391 aa37.9■■■■□ 3.66
SHOX2-204ENST00000483851 AFAP1Q8N556 730 aa37.88■■■■□ 3.65
SHOX2-204ENST00000483851 ATP7AQ04656 1500 aa37.86■■■■□ 3.65
SHOX2-204ENST00000483851 ZNF518AQ6AHZ1 1483 aa37.86■■■■□ 3.65
SHOX2-204ENST00000483851 PPP1R15AO75807 674 aaPredicted RBP37.81■■■■□ 3.64
SHOX2-204ENST00000483851 MAGI2Q86UL8 1455 aa37.8■■■■□ 3.64
SHOX2-204ENST00000483851 RPRD2Q5VT52 1461 aaKnown RBP37.79■■■■□ 3.64
SHOX2-204ENST00000483851 KDM5CP41229 1560 aa37.77■■■■□ 3.64
SHOX2-204ENST00000483851 DIP2BQ9P265 1576 aa37.77■■■■□ 3.64
SHOX2-204ENST00000483851 POGZQ7Z3K3 1410 aa37.77■■■■□ 3.64
SHOX2-204ENST00000483851 FAM135AQ9P2D6 1515 aa37.77■■■■□ 3.64
SHOX2-204ENST00000483851 PKD2Q13563 968 aa37.76■■■■□ 3.64
SHOX2-204ENST00000483851 IQGAP3Q86VI3 1631 aa37.75■■■■□ 3.63
SHOX2-204ENST00000483851 FOXD1Q16676 465 aa37.74■■■■□ 3.63
SHOX2-204ENST00000483851 MLH3Q9UHC1 1453 aa37.7■■■■□ 3.63
SHOX2-204ENST00000483851 KIDINS220Q9ULH0 1771 aa37.7■■■■□ 3.63
SHOX2-204ENST00000483851 EIF2AK4Q9P2K8 1649 aaKnown RBP37.69■■■■□ 3.62
SHOX2-204ENST00000483851 DIEXFQ68CQ4 756 aaKnown RBP37.68■■■■□ 3.62
SHOX2-204ENST00000483851 DNAJC5Q9H3Z4 198 aa37.67■■■■□ 3.62
SHOX2-204ENST00000483851 DHX29Q7Z478 1369 aaKnown RBP37.65■■■■□ 3.62
SHOX2-204ENST00000483851 DEPDC5O75140 1603 aa37.65■■■■□ 3.62
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms