RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 RIMBP3BA6NNM3 1639 aa20.82■□□□□ 0.92
CLK3-204ENST00000483723 RIMBP3Q9UFD9 1639 aa20.82■□□□□ 0.92
CLK3-204ENST00000483723 ABCC5O15440 1437 aa20.81■□□□□ 0.92
CLK3-204ENST00000483723 DAPK1P53355 1430 aa20.81■□□□□ 0.92
CLK3-204ENST00000483723 CAMSAP2Q08AD1 1489 aa20.81■□□□□ 0.92
CLK3-204ENST00000483723 ROCK1Q13464 1354 aa20.78■□□□□ 0.92
CLK3-204ENST00000483723 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.78■□□□□ 0.923e-12■□□□□ 9.1
CLK3-204ENST00000483723 GCC2Q8IWJ2 1684 aa20.77■□□□□ 0.92
CLK3-204ENST00000483723 CDC42BPBQ9Y5S2 1711 aa20.77■□□□□ 0.91
CLK3-204ENST00000483723 PREX2Q70Z35 1606 aa20.76■□□□□ 0.91
CLK3-204ENST00000483723 TTC37Q6PGP7 1564 aa20.73■□□□□ 0.91
CLK3-204ENST00000483723 CHIC2Q9UKJ5 165 aa20.73■□□□□ 0.91
CLK3-204ENST00000483723 MAPKBP1O60336 1514 aa20.71■□□□□ 0.91
CLK3-204ENST00000483723 CROCC2H7BZ55 1655 aa20.71■□□□□ 0.91
CLK3-204ENST00000483723 RRP7BPQ9NSQ0 103 aa20.7■□□□□ 0.9
CLK3-204ENST00000483723 ZNF777Q9ULD5 760 aaPredicted RBP20.7■□□□□ 0.9
CLK3-204ENST00000483723 MYO5CQ9NQX4 1742 aa20.69■□□□□ 0.9
CLK3-204ENST00000483723 ARHGEF5Q12774 1597 aa20.69■□□□□ 0.9
CLK3-204ENST00000483723 ADGRL2O95490 1459 aa20.69■□□□□ 0.9
CLK3-204ENST00000483723 SAMD9LQ8IVG5 1584 aa20.68■□□□□ 0.9
CLK3-204ENST00000483723 ACIN1Q9UKV3 1341 aaKnown RBP20.68■□□□□ 0.9
CLK3-204ENST00000483723 MBD5Q9P267 1494 aa20.68■□□□□ 0.9
CLK3-204ENST00000483723 ADGBQ8N7X0 1667 aa20.67■□□□□ 0.9
CLK3-204ENST00000483723 WDR7Q9Y4E6 1490 aa20.67■□□□□ 0.9
CLK3-204ENST00000483723 PLCH2O75038 1416 aa20.67■□□□□ 0.9
CLK3-204ENST00000483723 KCNH8Q96L42 1107 aa20.67■□□□□ 0.9
CLK3-204ENST00000483723 SHANK2Q9UPX8 1470 aa20.66■□□□□ 0.9
CLK3-204ENST00000483723 NCOA1Q15788 1441 aa20.65■□□□□ 0.9
CLK3-204ENST00000483723 RSPH4AQ5TD94 716 aa20.65■□□□□ 0.9
CLK3-204ENST00000483723 KDM6BO15054 1643 aa20.64■□□□□ 0.89
CLK3-204ENST00000483723 CYB5RLQ6IPT4 315 aa20.63■□□□□ 0.89
CLK3-204ENST00000483723 ARHGAP5Q13017 1502 aa20.63■□□□□ 0.89
CLK3-204ENST00000483723 ARAP3Q8WWN8 1544 aa20.63■□□□□ 0.89
CLK3-204ENST00000483723 KIAA1107Q9UPP5 1409 aa20.63■□□□□ 0.89
CLK3-204ENST00000483723 PLEKHH2Q8IVE3 1493 aa20.61■□□□□ 0.89
CLK3-204ENST00000483723 ASXL2Q76L83 1435 aa20.61■□□□□ 0.89
CLK3-204ENST00000483723 ABCA9Q8IUA7 1624 aa20.59■□□□□ 0.89
CLK3-204ENST00000483723 HNRNPMP52272 730 aaKnown RBP eCLIP20.59■□□□□ 0.894e-10■■■■■ 38
CLK3-204ENST00000483723 ANKRD30AQ9BXX3 1397 aa20.59■□□□□ 0.89
CLK3-204ENST00000483723 CCDC141Q6ZP82 1450 aa20.58■□□□□ 0.88
CLK3-204ENST00000483723 NPM1P06748 294 aaKnown RBP eCLIP20.58■□□□□ 0.88
CLK3-204ENST00000483723 C9orf84Q5VXU9 1444 aa20.57■□□□□ 0.88
CLK3-204ENST00000483723 TSPY4P0CV99 314 aa20.57■□□□□ 0.88
CLK3-204ENST00000483723 TSPY10P0CW01 314 aa20.57■□□□□ 0.88
CLK3-204ENST00000483723 EFCAB2Q5VUJ9 269 aa20.57■□□□□ 0.88
CLK3-204ENST00000483723 MAST1Q9Y2H9 1570 aa20.56■□□□□ 0.88
CLK3-204ENST00000483723 SYCP2Q9BX26 1530 aa20.55■□□□□ 0.88
CLK3-204ENST00000483723 ARHGEF12Q9NZN5 1544 aa20.53■□□□□ 0.88
CLK3-204ENST00000483723 DENND4BO75064 1496 aaPredicted RBP20.52■□□□□ 0.88
CLK3-204ENST00000483723 TIMELESSQ9UNS1 1208 aa20.51■□□□□ 0.87
CLK3-204ENST00000483723 ABCC1P33527 1531 aa20.51■□□□□ 0.87
CLK3-204ENST00000483723 TRIM52Q96A61 297 aa20.49■□□□□ 0.87
CLK3-204ENST00000483723 SIN3AQ96ST3 1273 aa20.49■□□□□ 0.87
CLK3-204ENST00000483723 ANKRD50Q9ULJ7 1429 aa20.49■□□□□ 0.87
CLK3-204ENST00000483723 MPHOSPH9Q99550 1183 aa20.48■□□□□ 0.87
CLK3-204ENST00000483723 KIF15Q9NS87 1388 aa20.45■□□□□ 0.86
CLK3-204ENST00000483723 PLXNC1O60486 1568 aa20.45■□□□□ 0.86
CLK3-204ENST00000483723 FANCAO15360 1455 aa20.43■□□□□ 0.86
CLK3-204ENST00000483723 PZPP20742 1482 aa20.43■□□□□ 0.86
CLK3-204ENST00000483723 TRAPPC8Q9Y2L5 1435 aa20.42■□□□□ 0.86
CLK3-204ENST00000483723 NEUROD1Q13562 356 aa20.4■□□□□ 0.86
CLK3-204ENST00000483723 RTEL1-TNFRSF6BF6WH68 1400 aa20.4■□□□□ 0.86
CLK3-204ENST00000483723 KDM5DQ9BY66 1539 aa20.39■□□□□ 0.86
CLK3-204ENST00000483723 ZNF316A6NFI3 1004 aaPredicted RBP20.38■□□□□ 0.85
CLK3-204ENST00000483723 CD109Q6YHK3 1445 aa20.38■□□□□ 0.85
CLK3-204ENST00000483723 ANKRD30BQ9BXX2 1392 aa20.36■□□□□ 0.85
CLK3-204ENST00000483723 SLC4A1APQ9BWU0 796 aaKnown RBP20.36■□□□□ 0.85
CLK3-204ENST00000483723 DUOX2Q9NRD8 1548 aa20.36■□□□□ 0.85
CLK3-204ENST00000483723 CFAP74Q9C0B2 1584 aa20.34■□□□□ 0.85
CLK3-204ENST00000483723 ADGRL1O94910 1474 aa20.34■□□□□ 0.85
CLK3-204ENST00000483723 PPP1R15AO75807 674 aaPredicted RBP20.34■□□□□ 0.85
CLK3-204ENST00000483723 GLI2P10070 1586 aa20.34■□□□□ 0.85
CLK3-204ENST00000483723 SCAPERQ9BY12 1400 aa20.34■□□□□ 0.85
CLK3-204ENST00000483723 AFAP1Q8N556 730 aa20.33■□□□□ 0.85
CLK3-204ENST00000483723 TRHP20396 242 aaPredicted RBP20.33■□□□□ 0.84
CLK3-204ENST00000483723 SPAG9O60271 1321 aaKnown RBP20.32■□□□□ 0.84
CLK3-204ENST00000483723 ZFYVE16Q7Z3T8 1539 aa20.31■□□□□ 0.84
CLK3-204ENST00000483723 ERBINQ96RT1 1412 aa20.31■□□□□ 0.84
CLK3-204ENST00000483723 UNC13BO14795 1591 aa20.31■□□□□ 0.84
CLK3-204ENST00000483723 NUP155O75694 1391 aa20.31■□□□□ 0.84
CLK3-204ENST00000483723 INO80Q9ULG1 1556 aaPredicted RBP20.3■□□□□ 0.84
CLK3-204ENST00000483723 TONSLQ96HA7 1378 aa20.29■□□□□ 0.84
CLK3-204ENST00000483723 MAP3K4Q9Y6R4 1608 aa20.29■□□□□ 0.84
CLK3-204ENST00000483723 FOXD1Q16676 465 aa20.29■□□□□ 0.84
CLK3-204ENST00000483723 NEO1Q92859 1461 aa20.28■□□□□ 0.84
CLK3-204ENST00000483723 ATP7AQ04656 1500 aa20.27■□□□□ 0.84
CLK3-204ENST00000483723 RPRD2Q5VT52 1461 aaKnown RBP20.27■□□□□ 0.83
CLK3-204ENST00000483723 MAGI2Q86UL8 1455 aa20.26■□□□□ 0.83
CLK3-204ENST00000483723 PKD2Q13563 968 aa20.26■□□□□ 0.83
CLK3-204ENST00000483723 ZNF518AQ6AHZ1 1483 aa20.24■□□□□ 0.83
CLK3-204ENST00000483723 FAM135AQ9P2D6 1515 aa20.24■□□□□ 0.83
CLK3-204ENST00000483723 KDM5CP41229 1560 aa20.23■□□□□ 0.83
CLK3-204ENST00000483723 IQGAP3Q86VI3 1631 aa20.23■□□□□ 0.83
CLK3-204ENST00000483723 KIDINS220Q9ULH0 1771 aa20.22■□□□□ 0.83
CLK3-204ENST00000483723 DIP2BQ9P265 1576 aa20.22■□□□□ 0.83
CLK3-204ENST00000483723 POGZQ7Z3K3 1410 aa20.21■□□□□ 0.83
CLK3-204ENST00000483723 MLH3Q9UHC1 1453 aa20.2■□□□□ 0.82
CLK3-204ENST00000483723 DHX29Q7Z478 1369 aaKnown RBP20.18■□□□□ 0.82
CLK3-204ENST00000483723 DEPDC5O75140 1603 aa20.18■□□□□ 0.82
CLK3-204ENST00000483723 EIF2AK4Q9P2K8 1649 aaKnown RBP20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms