RNA–Protein interactions for RNA: ENST00000480614.1

VEGFA-212, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 12,167 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-212ENST00000480614 HIRIP3Q9BW71 556 aaPredicted RBP12.08□□□□□ -0.48
VEGFA-212ENST00000480614 U2SURPO15042 1029 aaKnown RBP12.07□□□□□ -0.48
VEGFA-212ENST00000480614 TPM4P67936 248 aa12.07□□□□□ -0.48
VEGFA-212ENST00000480614 EIF3AQ14152 1382 aaKnown RBP12.06□□□□□ -0.48
VEGFA-212ENST00000480614 RTF1Q92541 710 aaKnown RBP12.06□□□□□ -0.48
VEGFA-212ENST00000480614 TIMELESSQ9UNS1 1208 aa12.06□□□□□ -0.48
VEGFA-212ENST00000480614 BAZ1AQ9NRL2 1556 aaPredicted RBP12.06□□□□□ -0.48
VEGFA-212ENST00000480614 NEUROD2Q15784 382 aa12.06□□□□□ -0.48
VEGFA-212ENST00000480614 EIF4G1Q04637 1599 aaKnown RBP12.04□□□□□ -0.48
VEGFA-212ENST00000480614 KTN1Q86UP2 1357 aaKnown RBP12.04□□□□□ -0.48
VEGFA-212ENST00000480614 CSPP1Q1MSJ5 1256 aa12.04□□□□□ -0.48
VEGFA-212ENST00000480614 TMX4Q9H1E5 349 aaPredicted RBP12.03□□□□□ -0.48
VEGFA-212ENST00000480614 ARHGAP35Q9NRY4 1499 aa12.03□□□□□ -0.48
VEGFA-212ENST00000480614 ISY1Q9ULR0 285 aaKnown RBP12.03□□□□□ -0.48
VEGFA-212ENST00000480614 MORC1Q86VD1 984 aa12.02□□□□□ -0.48
VEGFA-212ENST00000480614 CCER2I3L3R5 266 aa12.02□□□□□ -0.49
VEGFA-212ENST00000480614 SENP3Q9H4L4 574 aaPredicted RBP12.02□□□□□ -0.49
VEGFA-212ENST00000480614 GOLGA6L1Q8N7Z2 621 aa12.01□□□□□ -0.49
VEGFA-212ENST00000480614 PHF14O94880 888 aa12□□□□□ -0.49
VEGFA-212ENST00000480614 HDGFL2Q7Z4V5 671 aaPredicted RBP12□□□□□ -0.49
VEGFA-212ENST00000480614 TAOK2Q9UL54 1235 aa12□□□□□ -0.49
VEGFA-212ENST00000480614 CC2D1BQ5T0F9 858 aaKnown RBP11.99□□□□□ -0.49
VEGFA-212ENST00000480614 SRPK2P78362 688 aaKnown RBP11.99□□□□□ -0.49
VEGFA-212ENST00000480614 DEKP35659 375 aaKnown RBP11.98□□□□□ -0.49
VEGFA-212ENST00000480614 RWDD1Q9H446 243 aaPredicted RBP11.98□□□□□ -0.49
VEGFA-212ENST00000480614 RALBP1Q15311 655 aa11.97□□□□□ -0.49
VEGFA-212ENST00000480614 SPAG9O60271 1321 aaKnown RBP11.97□□□□□ -0.49
VEGFA-212ENST00000480614 HMMRO75330 724 aa11.97□□□□□ -0.49
VEGFA-212ENST00000480614 CHMP4CQ96CF2 233 aa11.96□□□□□ -0.49
VEGFA-212ENST00000480614 PHLDB1Q86UU1 1377 aa11.95□□□□□ -0.5
VEGFA-212ENST00000480614 CARMIL2Q6F5E8 1435 aa11.95□□□□□ -0.5
VEGFA-212ENST00000480614 SETD5Q9C0A6 1442 aa11.94□□□□□ -0.5
VEGFA-212ENST00000480614 STK31Q9BXU1 1019 aa11.94□□□□□ -0.5
VEGFA-212ENST00000480614 KIF3AQ9Y496 699 aa11.94□□□□□ -0.5
VEGFA-212ENST00000480614 DCAF11Q8TEB1 546 aa11.94□□□□□ -0.5
VEGFA-212ENST00000480614 LMOD3Q0VAK6 560 aa11.93□□□□□ -0.5
VEGFA-212ENST00000480614 TCERG1O14776 1098 aaKnown RBP11.92□□□□□ -0.5
VEGFA-212ENST00000480614 NCBP3Q53F19 620 aaKnown RBP11.92□□□□□ -0.5
VEGFA-212ENST00000480614 ROCK2O75116 1388 aaKnown RBP11.92□□□□□ -0.5
VEGFA-212ENST00000480614 B4GALNT3Q6L9W6 998 aa11.92□□□□□ -0.5
VEGFA-212ENST00000480614 PMFBP1Q8TBY8 1022 aa11.92□□□□□ -0.5
VEGFA-212ENST00000480614 A0A0U1RQG5 324 aaPredicted RBP11.92□□□□□ -0.5
VEGFA-212ENST00000480614 FMN1Q68DA7 1419 aa11.91□□□□□ -0.5
VEGFA-212ENST00000480614 GORABQ5T7V8 394 aa11.9□□□□□ -0.5
VEGFA-212ENST00000480614 TPM3P06753 285 aa11.9□□□□□ -0.5
VEGFA-212ENST00000480614 PRM3Q9NNZ6 103 aa11.9□□□□□ -0.5
VEGFA-212ENST00000480614 ITPRIPQ8IWB1 547 aa11.9□□□□□ -0.51
VEGFA-212ENST00000480614 SMARCA2P51531 1590 aa11.89□□□□□ -0.51
VEGFA-212ENST00000480614 TNNT3P45378 269 aaPredicted RBP11.89□□□□□ -0.51
VEGFA-212ENST00000480614 CEP89Q96ST8 783 aa11.89□□□□□ -0.51
VEGFA-212ENST00000480614 RCAN3Q9UKA8 241 aa11.89□□□□□ -0.51
VEGFA-212ENST00000480614 RSPH6AQ9H0K4 717 aa11.89□□□□□ -0.51
VEGFA-212ENST00000480614 TAF7LQ5H9L4 462 aa11.89□□□□□ -0.51
VEGFA-212ENST00000480614 RASSF8Q8NHQ8 419 aa11.88□□□□□ -0.51
VEGFA-212ENST00000480614 RTN4Q9NQC3 1192 aaKnown RBP11.88□□□□□ -0.51
VEGFA-212ENST00000480614 KIF16BQ96L93 1317 aa11.87□□□□□ -0.51
VEGFA-212ENST00000480614 HSP90B1P14625 803 aaKnown RBP11.87□□□□□ -0.51
VEGFA-212ENST00000480614 TERF2IPQ9NYB0 399 aa11.87□□□□□ -0.51
VEGFA-212ENST00000480614 ST18O60284 1047 aa11.87□□□□□ -0.51
VEGFA-212ENST00000480614 CARMIL1Q5VZK9 1371 aa11.87□□□□□ -0.51
VEGFA-212ENST00000480614 ANKRD30AQ9BXX3 1397 aa11.87□□□□□ -0.51
VEGFA-212ENST00000480614 CUX2O14529 1486 aa11.87□□□□□ -0.51
VEGFA-212ENST00000480614 U2AF1L5P0DN76 240 aaPredicted RBP11.86□□□□□ -0.51
VEGFA-212ENST00000480614 U2AF1Q01081 240 aaKnown RBP eCLIP11.86□□□□□ -0.51
VEGFA-212ENST00000480614 CSB-PGBD3P0DP91 1061 aa11.86□□□□□ -0.51
VEGFA-212ENST00000480614 VPS8Q8N3P4 1428 aa11.85□□□□□ -0.51
VEGFA-212ENST00000480614 SETQ01105 290 aaPredicted RBP11.85□□□□□ -0.51
VEGFA-212ENST00000480614 DDX11L8A8MPP1 907 aa11.85□□□□□ -0.51
VEGFA-212ENST00000480614 GOLGA6L3A6NEY3 463 aa11.85□□□□□ -0.51
VEGFA-212ENST00000480614 LRRFIP1Q32MZ4 808 aaKnown RBP11.85□□□□□ -0.51
VEGFA-212ENST00000480614 PDE3BQ13370 1112 aa11.84□□□□□ -0.51
VEGFA-212ENST00000480614 TPM1P09493 284 aa11.84□□□□□ -0.51
VEGFA-212ENST00000480614 TSR1Q2NL82 804 aaKnown RBP11.84□□□□□ -0.51
VEGFA-212ENST00000480614 CCDC70Q6NSX1 233 aa11.84□□□□□ -0.51
VEGFA-212ENST00000480614 SPRYD3Q8NCJ5 442 aa11.84□□□□□ -0.51
VEGFA-212ENST00000480614 RBM19Q9Y4C8 960 aaKnown RBP11.84□□□□□ -0.51
VEGFA-212ENST00000480614 ATP6V1DQ9Y5K8 247 aa11.83□□□□□ -0.51
VEGFA-212ENST00000480614 TRIM6-TRIM34B2RNG4 842 aa11.83□□□□□ -0.52
VEGFA-212ENST00000480614 MYO15BQ96JP2 1530 aa11.83□□□□□ -0.52
VEGFA-212ENST00000480614 UACAQ9BZF9 1416 aa11.83□□□□□ -0.52
VEGFA-212ENST00000480614 SENP3-EIF4A1A0A087X0R7 540 aa11.83□□□□□ -0.52
VEGFA-212ENST00000480614 APBB1O00213 710 aa11.82□□□□□ -0.52
VEGFA-212ENST00000480614 SOX12O15370 315 aa11.82□□□□□ -0.52
VEGFA-212ENST00000480614 TPM2P07951 284 aa11.82□□□□□ -0.52
VEGFA-212ENST00000480614 PAK3O75914 559 aaPredicted RBP11.82□□□□□ -0.52
VEGFA-212ENST00000480614 CHMP3Q9Y3E7 222 aa11.82□□□□□ -0.52
VEGFA-212ENST00000480614 SIN3AQ96ST3 1273 aa11.82□□□□□ -0.52
VEGFA-212ENST00000480614 CCDC18Q5T9S5 1454 aa11.81□□□□□ -0.52
VEGFA-212ENST00000480614 EID1Q9Y6B2 187 aa11.81□□□□□ -0.52
VEGFA-212ENST00000480614 G3V3G9 751 aa11.81□□□□□ -0.52
VEGFA-212ENST00000480614 DCAF8Q5TAQ9 597 aa11.81□□□□□ -0.52
VEGFA-212ENST00000480614 GPS2Q13227 327 aa11.8□□□□□ -0.52
VEGFA-212ENST00000480614 SMC4Q9NTJ3 1288 aa11.79□□□□□ -0.52
VEGFA-212ENST00000480614 SF3A1Q15459 793 aaKnown RBP11.79□□□□□ -0.52
VEGFA-212ENST00000480614 MARCH6O60337 910 aa11.79□□□□□ -0.52
VEGFA-212ENST00000480614 RSPH4AQ5TD94 716 aa11.79□□□□□ -0.52
VEGFA-212ENST00000480614 CENPJQ9HC77 1338 aaPredicted RBP11.79□□□□□ -0.52
VEGFA-212ENST00000480614 AKAP17AQ02040 695 aaKnown RBP11.79□□□□□ -0.52
VEGFA-212ENST00000480614 PKD2Q13563 968 aa11.79□□□□□ -0.52
VEGFA-212ENST00000480614 SLKQ9H2G2 1235 aaPredicted RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms