RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 GPATCH8Q9UKJ3 1502 aaKnown RBP18.73■□□□□ 0.59
SEC13-216ENST00000479868 DENND4BO75064 1496 aaPredicted RBP18.73■□□□□ 0.59
SEC13-216ENST00000479868 ATP10BO94823 1461 aa18.72■□□□□ 0.59
SEC13-216ENST00000479868 ROCK1Q13464 1354 aa18.72■□□□□ 0.59
SEC13-216ENST00000479868 CAMSAP2Q08AD1 1489 aa18.72■□□□□ 0.59
SEC13-216ENST00000479868 YTHDC1Q96MU7 727 aaKnown RBP18.71■□□□□ 0.59
SEC13-216ENST00000479868 TONSLQ96HA7 1378 aa18.71■□□□□ 0.59
SEC13-216ENST00000479868 TRIM52Q96A61 297 aa18.71■□□□□ 0.59
SEC13-216ENST00000479868 CFDP1Q9UEE9 299 aaPredicted RBP18.71■□□□□ 0.59
SEC13-216ENST00000479868 PTPRGP23470 1445 aa18.68■□□□□ 0.58
SEC13-216ENST00000479868 PLEKHD1A6NEE1 506 aa18.68■□□□□ 0.58
SEC13-216ENST00000479868 CDC42BPAQ5VT25 1732 aa18.66■□□□□ 0.58
SEC13-216ENST00000479868 SHROOM2Q13796 1616 aa18.66■□□□□ 0.58
SEC13-216ENST00000479868 ZNF777Q9ULD5 760 aaPredicted RBP18.66■□□□□ 0.58
SEC13-216ENST00000479868 ABCC10Q5T3U5 1492 aa18.65■□□□□ 0.58
SEC13-216ENST00000479868 MPHOSPH9Q99550 1183 aa18.65■□□□□ 0.58
SEC13-216ENST00000479868 KDM5BQ9UGL1 1544 aa18.64■□□□□ 0.57
SEC13-216ENST00000479868 CROCC2H7BZ55 1655 aa18.63■□□□□ 0.57
SEC13-216ENST00000479868 ADGBQ8N7X0 1667 aa18.62■□□□□ 0.57
SEC13-216ENST00000479868 NCOA1Q15788 1441 aa18.6■□□□□ 0.57
SEC13-216ENST00000479868 ERCC6L2Q5T890 1561 aa18.6■□□□□ 0.57
SEC13-216ENST00000479868 FOXD1Q16676 465 aa18.6■□□□□ 0.57
SEC13-216ENST00000479868 HIRIP3Q9BW71 556 aaPredicted RBP18.6■□□□□ 0.57
SEC13-216ENST00000479868 ADGRL2O95490 1459 aa18.58■□□□□ 0.57
SEC13-216ENST00000479868 SLC24A1O60721 1099 aa18.58■□□□□ 0.56
SEC13-216ENST00000479868 DDX10Q13206 875 aaKnown RBP18.54■□□□□ 0.56
SEC13-216ENST00000479868 GTF3C3Q9Y5Q9 886 aa18.54■□□□□ 0.56
SEC13-216ENST00000479868 ANKRD30BQ9BXX2 1392 aa18.53■□□□□ 0.56
SEC13-216ENST00000479868 ANKRD30AQ9BXX3 1397 aa18.52■□□□□ 0.56
SEC13-216ENST00000479868 SLC4A1APQ9BWU0 796 aaKnown RBP18.52■□□□□ 0.56
SEC13-216ENST00000479868 PZPP20742 1482 aa18.52■□□□□ 0.55
SEC13-216ENST00000479868 CLASP1Q7Z460 1538 aa18.51■□□□□ 0.55
SEC13-216ENST00000479868 CDC42BPBQ9Y5S2 1711 aa18.51■□□□□ 0.55
SEC13-216ENST00000479868 SHANK2Q9UPX8 1470 aa18.5■□□□□ 0.55
SEC13-216ENST00000479868 ABCC2Q92887 1545 aa18.5■□□□□ 0.55
SEC13-216ENST00000479868 C9orf84Q5VXU9 1444 aa18.49■□□□□ 0.55
SEC13-216ENST00000479868 PREX2Q70Z35 1606 aa18.49■□□□□ 0.55
SEC13-216ENST00000479868 RPRD2Q5VT52 1461 aaKnown RBP18.49■□□□□ 0.55
SEC13-216ENST00000479868 ANKRD50Q9ULJ7 1429 aa18.48■□□□□ 0.55
SEC13-216ENST00000479868 L3MBTL2Q969R5 705 aa18.48■□□□□ 0.55
SEC13-216ENST00000479868 SAMD9LQ8IVG5 1584 aa18.47■□□□□ 0.55
SEC13-216ENST00000479868 HNRNPMP52272 730 aaKnown RBP eCLIP18.47■□□□□ 0.55
SEC13-216ENST00000479868 ARHGEF5Q12774 1597 aa18.47■□□□□ 0.55
SEC13-216ENST00000479868 TTC37Q6PGP7 1564 aa18.47■□□□□ 0.55
SEC13-216ENST00000479868 MBD5Q9P267 1494 aa18.46■□□□□ 0.55
SEC13-216ENST00000479868 PELP1Q8IZL8 1130 aaKnown RBP18.46■□□□□ 0.55
SEC13-216ENST00000479868 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.44■□□□□ 0.54
SEC13-216ENST00000479868 TEX14Q8IWB6 1497 aa18.44■□□□□ 0.54
SEC13-216ENST00000479868 TSPY4P0CV99 314 aa18.44■□□□□ 0.54
SEC13-216ENST00000479868 TSPY10P0CW01 314 aa18.44■□□□□ 0.54
SEC13-216ENST00000479868 KCNH8Q96L42 1107 aa18.41■□□□□ 0.54
SEC13-216ENST00000479868 CCDC141Q6ZP82 1450 aa18.41■□□□□ 0.54
SEC13-216ENST00000479868 KIAA1107Q9UPP5 1409 aa18.41■□□□□ 0.54
SEC13-216ENST00000479868 KIF15Q9NS87 1388 aa18.4■□□□□ 0.54
SEC13-216ENST00000479868 ZCCHC11Q5TAX3 1644 aaKnown RBP18.39■□□□□ 0.54
SEC13-216ENST00000479868 ARHGAP5Q13017 1502 aa18.39■□□□□ 0.54
SEC13-216ENST00000479868 HSPA5P11021 654 aaKnown RBP18.39■□□□□ 0.53
SEC13-216ENST00000479868 PKD2Q13563 968 aa18.39■□□□□ 0.53
SEC13-216ENST00000479868 SYCP2Q9BX26 1530 aa18.38■□□□□ 0.53
SEC13-216ENST00000479868 MYO5CQ9NQX4 1742 aa18.38■□□□□ 0.53
SEC13-216ENST00000479868 UHRF1BP1LA0JNW5 1464 aa18.37■□□□□ 0.53
SEC13-216ENST00000479868 NBPF8Q3BBV2 869 aa18.37■□□□□ 0.53
SEC13-216ENST00000479868 NUP155O75694 1391 aa18.37■□□□□ 0.53
SEC13-216ENST00000479868 KDM5DQ9BY66 1539 aa18.35■□□□□ 0.53
SEC13-216ENST00000479868 EIF4G2P78344 907 aaKnown RBP eCLIP18.34■□□□□ 0.53
SEC13-216ENST00000479868 RSPH4AQ5TD94 716 aa18.34■□□□□ 0.53
SEC13-216ENST00000479868 WASHC2AQ641Q2 1341 aa18.31■□□□□ 0.52
SEC13-216ENST00000479868 MAST1Q9Y2H9 1570 aa18.31■□□□□ 0.52
SEC13-216ENST00000479868 ANP32CO43423 234 aa18.31■□□□□ 0.52
SEC13-216ENST00000479868 ARHGEF12Q9NZN5 1544 aa18.29■□□□□ 0.52
SEC13-216ENST00000479868 PLCH2O75038 1416 aa18.29■□□□□ 0.52
SEC13-216ENST00000479868 PLEKHH2Q8IVE3 1493 aa18.28■□□□□ 0.52
SEC13-216ENST00000479868 FAM135AQ9P2D6 1515 aa18.26■□□□□ 0.51
SEC13-216ENST00000479868 CCER2I3L3R5 266 aa18.25■□□□□ 0.51
SEC13-216ENST00000479868 PLXNC1O60486 1568 aa18.25■□□□□ 0.51
SEC13-216ENST00000479868 SPATA31E1Q6ZUB1 1445 aa18.25■□□□□ 0.51
SEC13-216ENST00000479868 C11orf95C9JLR9 678 aaPredicted RBP18.24■□□□□ 0.51
SEC13-216ENST00000479868 ABCC1P33527 1531 aa18.22■□□□□ 0.51
SEC13-216ENST00000479868 UNC13BO14795 1591 aa18.22■□□□□ 0.51
SEC13-216ENST00000479868 EFCAB2Q5VUJ9 269 aa18.22■□□□□ 0.51
SEC13-216ENST00000479868 MYT1Q01538 1121 aa18.21■□□□□ 0.51
SEC13-216ENST00000479868 CCDC7Q96M83 1385 aa18.2■□□□□ 0.5
SEC13-216ENST00000479868 ZNF326Q5BKZ1 582 aaKnown RBP18.2■□□□□ 0.5
SEC13-216ENST00000479868 TRAPPC8Q9Y2L5 1435 aa18.19■□□□□ 0.5
SEC13-216ENST00000479868 DUOX2Q9NRD8 1548 aa18.18■□□□□ 0.5
SEC13-216ENST00000479868 WDR7Q9Y4E6 1490 aa18.18■□□□□ 0.5
SEC13-216ENST00000479868 POLR1AO95602 1720 aaPredicted RBP18.18■□□□□ 0.5
SEC13-216ENST00000479868 CNTLNQ9NXG0 1405 aa18.18■□□□□ 0.5
SEC13-216ENST00000479868 UHRF1BP1Q6BDS2 1440 aa18.17■□□□□ 0.5
SEC13-216ENST00000479868 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.17■□□□□ 0.5
SEC13-216ENST00000479868 ARAP3Q8WWN8 1544 aa18.16■□□□□ 0.5
SEC13-216ENST00000479868 IQGAP3Q86VI3 1631 aa18.16■□□□□ 0.5
SEC13-216ENST00000479868 KIF7Q2M1P5 1343 aa18.15■□□□□ 0.5
SEC13-216ENST00000479868 ERBINQ96RT1 1412 aa18.15■□□□□ 0.5
SEC13-216ENST00000479868 USP47Q96K76 1375 aa18.14■□□□□ 0.49
SEC13-216ENST00000479868 KDM5CP41229 1560 aa18.13■□□□□ 0.49
SEC13-216ENST00000479868 MAGI2Q86UL8 1455 aa18.13■□□□□ 0.49
SEC13-216ENST00000479868 RALGAPBQ86X10 1494 aa18.13■□□□□ 0.49
SEC13-216ENST00000479868 PLA2R1Q13018 1463 aa18.13■□□□□ 0.49
SEC13-216ENST00000479868 KDM2AQ9Y2K7 1162 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms