RNA–Protein interactions for RNA: ENST00000479440.1

DDX56-210, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-210ENST00000479440 SCAPERQ9BY12 1400 aa27.03■■□□□ 1.92
DDX56-210ENST00000479440 ARHGEF12Q9NZN5 1544 aa27.01■■□□□ 1.91
DDX56-210ENST00000479440 C9orf84Q5VXU9 1444 aa27.01■■□□□ 1.91
DDX56-210ENST00000479440 MLECQ14165 292 aa27.01■■□□□ 1.91
DDX56-210ENST00000479440 PREX1Q8TCU6 1659 aa26.98■■□□□ 1.91
DDX56-210ENST00000479440 CERKQ8TCT0 537 aa26.98■■□□□ 1.91
DDX56-210ENST00000479440 ATP10AO60312 1499 aa26.98■■□□□ 1.91
DDX56-210ENST00000479440 MYO5CQ9NQX4 1742 aa26.97■■□□□ 1.91
DDX56-210ENST00000479440 ZNF518AQ6AHZ1 1483 aa26.92■■□□□ 1.9
DDX56-210ENST00000479440 FMN1Q68DA7 1419 aa26.91■■□□□ 1.9
DDX56-210ENST00000479440 KIF14Q15058 1648 aa26.91■■□□□ 1.9
DDX56-210ENST00000479440 EFCAB2Q5VUJ9 269 aa26.9■■□□□ 1.9
DDX56-210ENST00000479440 CDK11AQ9UQ88 783 aaPredicted RBP26.87■■□□□ 1.89
DDX56-210ENST00000479440 KDM5CP41229 1560 aa26.87■■□□□ 1.89
DDX56-210ENST00000479440 UHRF1BP1Q6BDS2 1440 aa26.85■■□□□ 1.89
DDX56-210ENST00000479440 ARHGAP5Q13017 1502 aa26.85■■□□□ 1.89
DDX56-210ENST00000479440 CLIP1P30622 1438 aa26.83■■□□□ 1.89
DDX56-210ENST00000479440 ATP1B4Q9UN42 357 aaPredicted RBP26.83■■□□□ 1.89
DDX56-210ENST00000479440 DMRT2Q9Y5R5 561 aa26.82■■□□□ 1.88
DDX56-210ENST00000479440 REREQ9P2R6 1566 aa26.82■■□□□ 1.88
DDX56-210ENST00000479440 TROQ12816 1431 aaPredicted RBP26.82■■□□□ 1.88
DDX56-210ENST00000479440 DIP2CQ9Y2E4 1556 aa26.8■■□□□ 1.88
DDX56-210ENST00000479440 CEBPAP49715 358 aaPredicted RBP26.78■■□□□ 1.88
DDX56-210ENST00000479440 ARHGAP35Q9NRY4 1499 aa26.78■■□□□ 1.88
DDX56-210ENST00000479440 STRCQ7RTU9 1775 aa26.77■■□□□ 1.88
DDX56-210ENST00000479440 MYT1LQ9UL68 1186 aa26.76■■□□□ 1.87
DDX56-210ENST00000479440 ABCA6Q8N139 1617 aa26.74■■□□□ 1.87
DDX56-210ENST00000479440 UBTFP17480 764 aaKnown RBP26.73■■□□□ 1.87
DDX56-210ENST00000479440 AFAP1Q8N556 730 aa26.72■■□□□ 1.87
DDX56-210ENST00000479440 MLH3Q9UHC1 1453 aa26.72■■□□□ 1.87
DDX56-210ENST00000479440 AGLP35573 1532 aa26.7■■□□□ 1.87
DDX56-210ENST00000479440 C3P01024 1663 aa26.7■■□□□ 1.87
DDX56-210ENST00000479440 PTPRTO14522 1441 aa26.7■■□□□ 1.86
DDX56-210ENST00000479440 DISP3Q9P2K9 1392 aa26.7■■□□□ 1.86
DDX56-210ENST00000479440 ABCC1P33527 1531 aa26.7■■□□□ 1.86
DDX56-210ENST00000479440 PREX2Q70Z35 1606 aa26.69■■□□□ 1.86
DDX56-210ENST00000479440 CDC42BPBQ9Y5S2 1711 aa26.68■■□□□ 1.86
DDX56-210ENST00000479440 ESF1Q9H501 851 aaKnown RBP26.67■■□□□ 1.86
DDX56-210ENST00000479440 SETD1BQ9UPS6 1966 aaKnown RBP26.66■■□□□ 1.86
DDX56-210ENST00000479440 LRRIQ1Q96JM4 1722 aa26.65■■□□□ 1.86
DDX56-210ENST00000479440 ITSN2Q9NZM3 1697 aa26.65■■□□□ 1.86
DDX56-210ENST00000479440 EHMT2Q96KQ7 1210 aa26.64■■□□□ 1.86
DDX56-210ENST00000479440 CCDC18Q5T9S5 1454 aa26.63■■□□□ 1.85
DDX56-210ENST00000479440 CNTLNQ9NXG0 1405 aa26.63■■□□□ 1.85
DDX56-210ENST00000479440 TRAPPC8Q9Y2L5 1435 aa26.63■■□□□ 1.85
DDX56-210ENST00000479440 SPATA31D1Q6ZQQ2 1576 aa26.61■■□□□ 1.85
DDX56-210ENST00000479440 IQSEC2Q5JU85 1478 aa26.6■■□□□ 1.85
DDX56-210ENST00000479440 NCOA1Q15788 1441 aa26.57■■□□□ 1.84
DDX56-210ENST00000479440 KIDINS220Q9ULH0 1771 aa26.56■■□□□ 1.84
DDX56-210ENST00000479440 LTBP4Q8N2S1 1624 aa26.55■■□□□ 1.84
DDX56-210ENST00000479440 SOCS7O14512 581 aa26.55■■□□□ 1.84
DDX56-210ENST00000479440 ILDR2Q71H61 639 aa26.55■■□□□ 1.84
DDX56-210ENST00000479440 MROH2AA6NES4 1674 aa26.54■■□□□ 1.84
DDX56-210ENST00000479440 CASKIN1Q8WXD9 1431 aa26.54■■□□□ 1.84
DDX56-210ENST00000479440 NPATQ14207 1427 aa26.52■■□□□ 1.84
DDX56-210ENST00000479440 CDC42BPAQ5VT25 1732 aa26.51■■□□□ 1.83
DDX56-210ENST00000479440 SAMD9LQ8IVG5 1584 aa26.5■■□□□ 1.83
DDX56-210ENST00000479440 CAMSAP1Q5T5Y3 1602 aa26.49■■□□□ 1.83
DDX56-210ENST00000479440 SYCP2Q9BX26 1530 aa26.46■■□□□ 1.83
DDX56-210ENST00000479440 FYCO1Q9BQS8 1478 aa26.46■■□□□ 1.83
DDX56-210ENST00000479440 ZNF142P52746 1687 aaPredicted RBP26.42■■□□□ 1.82
DDX56-210ENST00000479440 MYO3AQ8NEV4 1616 aa26.41■■□□□ 1.82
DDX56-210ENST00000479440 ZMYM3Q14202 1370 aa26.41■■□□□ 1.82
DDX56-210ENST00000479440 SPAG9O60271 1321 aaKnown RBP26.4■■□□□ 1.82
DDX56-210ENST00000479440 ATP7AQ04656 1500 aa26.4■■□□□ 1.82
DDX56-210ENST00000479440 PLXNC1O60486 1568 aa26.4■■□□□ 1.82
DDX56-210ENST00000479440 SUPT6HQ7KZ85 1726 aaKnown RBP26.39■■□□□ 1.82
DDX56-210ENST00000479440 PLA2R1Q13018 1463 aa26.39■■□□□ 1.82
DDX56-210ENST00000479440 ZNF777Q9ULD5 760 aaPredicted RBP26.39■■□□□ 1.82
DDX56-210ENST00000479440 INO80Q9ULG1 1556 aaPredicted RBP26.38■■□□□ 1.81
DDX56-210ENST00000479440 PLEKHH2Q8IVE3 1493 aa26.38■■□□□ 1.81
DDX56-210ENST00000479440 CLTCQ00610 1675 aaKnown RBP26.38■■□□□ 1.81
DDX56-210ENST00000479440 GPATCH8Q9UKJ3 1502 aaKnown RBP26.36■■□□□ 1.81
DDX56-210ENST00000479440 CEP170BQ9Y4F5 1589 aaPredicted RBP26.35■■□□□ 1.81
DDX56-210ENST00000479440 A2MP01023 1474 aa26.35■■□□□ 1.81
DDX56-210ENST00000479440 KIAA1107Q9UPP5 1409 aa26.34■■□□□ 1.81
DDX56-210ENST00000479440 PKD2Q13563 968 aa26.32■■□□□ 1.8
DDX56-210ENST00000479440 NCKAP5LQ9HCH0 1330 aa26.32■■□□□ 1.8
DDX56-210ENST00000479440 TCOF1Q13428 1488 aaKnown RBP26.31■■□□□ 1.8
DDX56-210ENST00000479440 ZNF335Q9H4Z2 1342 aaPredicted RBP26.31■■□□□ 1.8
DDX56-210ENST00000479440 PTPRKQ15262 1439 aa26.31■■□□□ 1.8
DDX56-210ENST00000479440 HNRNPMP52272 730 aaKnown RBP eCLIP26.29■■□□□ 1.8
DDX56-210ENST00000479440 UBAP1LF5GYI3 381 aa26.27■■□□□ 1.8
DDX56-210ENST00000479440 CHIC1Q5VXU3 224 aa26.27■■□□□ 1.8
DDX56-210ENST00000479440 CFDP1Q9UEE9 299 aaPredicted RBP26.27■■□□□ 1.8
DDX56-210ENST00000479440 CCNB3Q8WWL7 1395 aa26.27■■□□□ 1.8
DDX56-210ENST00000479440 ADGBQ8N7X0 1667 aa26.26■■□□□ 1.79
DDX56-210ENST00000479440 GGT6Q6P531 493 aa26.23■■□□□ 1.79
DDX56-210ENST00000479440 PPP6R1Q9UPN7 881 aa26.22■■□□□ 1.79
DDX56-210ENST00000479440 A2ML1A8K2U0 1454 aa26.21■■□□□ 1.79
DDX56-210ENST00000479440 MTUS2Q5JR59 1369 aa26.2■■□□□ 1.78
DDX56-210ENST00000479440 DNMT1P26358 1616 aaKnown RBP26.17■■□□□ 1.78
DDX56-210ENST00000479440 TIAM1Q13009 1591 aa26.16■■□□□ 1.78
DDX56-210ENST00000479440 POLR1AO95602 1720 aaPredicted RBP26.14■■□□□ 1.78
DDX56-210ENST00000479440 CPS1P31327 1500 aa26.14■■□□□ 1.77
DDX56-210ENST00000479440 EHBP1L1Q8N3D4 1523 aa26.14■■□□□ 1.77
DDX56-210ENST00000479440 FAM135AQ9P2D6 1515 aa26.14■■□□□ 1.77
DDX56-210ENST00000479440 RTEL1-TNFRSF6BF6WH68 1400 aa26.14■■□□□ 1.77
DDX56-210ENST00000479440 KDM5DQ9BY66 1539 aa26.11■■□□□ 1.77
DDX56-210ENST00000479440 MBD5Q9P267 1494 aa26.11■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms