RNA–Protein interactions for RNA: ENST00000477243.1

HMGN4-202, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

TSL 3

Gene HMGN4, Length 113 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-202ENST00000477243 ARID3CA6NKF2 412 aa4.53□□□□□ -1.68
HMGN4-202ENST00000477243 BARGINQ6ZT62 677 aa4.53□□□□□ -1.68
HMGN4-202ENST00000477243 UPF1Q92900 1129 aaKnown RBP eCLIP4.53□□□□□ -1.68
HMGN4-202ENST00000477243 SGIP1Q9BQI5 828 aa4.53□□□□□ -1.68
HMGN4-202ENST00000477243 IQSEC2Q5JU85 1478 aa4.52□□□□□ -1.69
HMGN4-202ENST00000477243 TESPA1A2RU30 521 aaPredicted RBP4.52□□□□□ -1.69
HMGN4-202ENST00000477243 POLA2Q14181 598 aa4.51□□□□□ -1.69
HMGN4-202ENST00000477243 TMCO4Q5TGY1 634 aa4.51□□□□□ -1.69
HMGN4-202ENST00000477243 RGS22Q8NE09 1264 aa4.51□□□□□ -1.69
HMGN4-202ENST00000477243 ZRANB1Q9UGI0 708 aa4.51□□□□□ -1.69
HMGN4-202ENST00000477243 MKRN3Q13064 507 aaKnown RBP4.5□□□□□ -1.69
HMGN4-202ENST00000477243 KRI1Q8N9T8 703 aaKnown RBP4.5□□□□□ -1.69
HMGN4-202ENST00000477243 PUS7Q96PZ0 661 aaKnown RBP4.5□□□□□ -1.69
HMGN4-202ENST00000477243 ZNF692Q9BU19 519 aaPredicted RBP4.5□□□□□ -1.69
HMGN4-202ENST00000477243 KDM4CQ9H3R0 1056 aa4.5□□□□□ -1.69
HMGN4-202ENST00000477243 STK24Q9Y6E0 443 aa4.5□□□□□ -1.69
HMGN4-202ENST00000477243 A6NJR5 290 aa4.49□□□□□ -1.69
HMGN4-202ENST00000477243 IGSF3O75054 1194 aa4.49□□□□□ -1.69
HMGN4-202ENST00000477243 CCDC82Q8N4S0 544 aa4.49□□□□□ -1.69
HMGN4-202ENST00000477243 GPBP1L1Q9HC44 474 aaPredicted RBP4.49□□□□□ -1.69
HMGN4-202ENST00000477243 E9PSI1 815 aa4.48□□□□□ -1.69
HMGN4-202ENST00000477243 SEMA3EO15041 775 aa4.48□□□□□ -1.69
HMGN4-202ENST00000477243 PDE4CQ08493 712 aa4.48□□□□□ -1.69
HMGN4-202ENST00000477243 E2F4Q16254 413 aa4.48□□□□□ -1.69
HMGN4-202ENST00000477243 DCAF8Q5TAQ9 597 aa4.48□□□□□ -1.69
HMGN4-202ENST00000477243 AEBP1Q8IUX7 1158 aa4.48□□□□□ -1.69
HMGN4-202ENST00000477243 BCL11BQ9C0K0 894 aaPredicted RBP4.48□□□□□ -1.69
HMGN4-202ENST00000477243 TRAK2O60296 914 aa4.47□□□□□ -1.69
HMGN4-202ENST00000477243 MTMR7Q9Y216 660 aa4.47□□□□□ -1.69
HMGN4-202ENST00000477243 PATL2C9JE40 543 aaKnown RBP4.46□□□□□ -1.7
HMGN4-202ENST00000477243 CHRM1P11229 460 aaPredicted RBP4.46□□□□□ -1.7
HMGN4-202ENST00000477243 RBM25P49756 843 aaKnown RBP4.46□□□□□ -1.7
HMGN4-202ENST00000477243 SERPINA10Q9UK55 444 aa4.46□□□□□ -1.7
HMGN4-202ENST00000477243 LRP5O75197 1615 aa4.46□□□□□ -1.7
HMGN4-202ENST00000477243 ZNF316A6NFI3 1004 aaPredicted RBP4.45□□□□□ -1.7
HMGN4-202ENST00000477243 MFAP1P55081 439 aaKnown RBP4.45□□□□□ -1.7
HMGN4-202ENST00000477243 PDE4DQ08499 809 aa4.45□□□□□ -1.7
HMGN4-202ENST00000477243 COL13A1Q5TAT6 717 aaPredicted RBP4.45□□□□□ -1.7
HMGN4-202ENST00000477243 DDRGK1Q96HY6 314 aa4.45□□□□□ -1.7
HMGN4-202ENST00000477243 TOP2BQ02880 1626 aa4.45□□□□□ -1.7
HMGN4-202ENST00000477243 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.44□□□□□ -1.7
HMGN4-202ENST00000477243 CADPS2Q86UW7 1296 aa4.44□□□□□ -1.7
HMGN4-202ENST00000477243 CCDC97Q96F63 343 aaPredicted RBP4.44□□□□□ -1.7
HMGN4-202ENST00000477243 ZFP91Q96JP5 570 aaPredicted RBP4.44□□□□□ -1.7
HMGN4-202ENST00000477243 GZF1Q9H116 711 aaPredicted RBP4.44□□□□□ -1.7
HMGN4-202ENST00000477243 SPDYE2BA6NHP3 402 aa4.43□□□□□ -1.7
HMGN4-202ENST00000477243 TRIM66O15016 1216 aa4.43□□□□□ -1.7
HMGN4-202ENST00000477243 SPDYE6P0CI01 402 aa4.43□□□□□ -1.7
HMGN4-202ENST00000477243 SPDYE2Q495Y8 402 aa4.43□□□□□ -1.7
HMGN4-202ENST00000477243 AATKQ6ZMQ8 1374 aa4.42□□□□□ -1.7
HMGN4-202ENST00000477243 PTPRTO14522 1441 aa4.42□□□□□ -1.7
HMGN4-202ENST00000477243 TNS2Q63HR2 1409 aa4.42□□□□□ -1.7
HMGN4-202ENST00000477243 FBXW7Q969H0 707 aa4.42□□□□□ -1.7
HMGN4-202ENST00000477243 FAM212AQ96EL1 285 aa4.42□□□□□ -1.7
HMGN4-202ENST00000477243 GOPCQ9HD26 462 aa4.42□□□□□ -1.7
HMGN4-202ENST00000477243 NUBP1P53384 320 aa4.41□□□□□ -1.7
HMGN4-202ENST00000477243 FAM161AQ3B820 660 aa4.41□□□□□ -1.7
HMGN4-202ENST00000477243 RSPH4AQ5TD94 716 aa4.41□□□□□ -1.7
HMGN4-202ENST00000477243 GPIHBP1Q8IV16 184 aa4.41□□□□□ -1.7
HMGN4-202ENST00000477243 SSUH2Q9Y2M2 353 aa4.41□□□□□ -1.7
HMGN4-202ENST00000477243 ACIN1Q9UKV3 1341 aaKnown RBP4.41□□□□□ -1.7
HMGN4-202ENST00000477243 KMT2BQ9UMN6 2715 aaPredicted RBP4.4□□□□□ -1.7
HMGN4-202ENST00000477243 FOXD4L5Q5VV16 416 aaPredicted RBP4.4□□□□□ -1.71
HMGN4-202ENST00000477243 ZNF784Q8NCA9 323 aaPredicted RBP4.4□□□□□ -1.71
HMGN4-202ENST00000477243 FOXD4L4Q8WXT5 416 aaPredicted RBP4.4□□□□□ -1.71
HMGN4-202ENST00000477243 FAM117AQ9C073 453 aa4.4□□□□□ -1.71
HMGN4-202ENST00000477243 AMOTL2Q9Y2J4 779 aa4.4□□□□□ -1.71
HMGN4-202ENST00000477243 SETD1AO15047 1707 aaKnown RBP4.4□□□□□ -1.71
HMGN4-202ENST00000477243 CACNA1GO43497 2377 aa4.4□□□□□ -1.71
HMGN4-202ENST00000477243 PCF11O94913 1555 aaKnown RBP4.4□□□□□ -1.71
HMGN4-202ENST00000477243 SLC51AQ86UW1 340 aa4.39□□□□□ -1.71
HMGN4-202ENST00000477243 CLUAP1Q96AJ1 413 aa4.39□□□□□ -1.71
HMGN4-202ENST00000477243 ARIH1Q9Y4X5 557 aaPredicted RBP4.39□□□□□ -1.71
HMGN4-202ENST00000477243 THOC2Q8NI27 1593 aaKnown RBP4.39□□□□□ -1.71
HMGN4-202ENST00000477243 ONECUT3O60422 494 aaPredicted RBP4.38□□□□□ -1.71
HMGN4-202ENST00000477243 PPP1R15AO75807 674 aaPredicted RBP4.38□□□□□ -1.71
HMGN4-202ENST00000477243 ZNF777Q9ULD5 760 aaPredicted RBP4.38□□□□□ -1.71
HMGN4-202ENST00000477243 PROSER2Q86WR7 435 aaPredicted RBP4.37□□□□□ -1.71
HMGN4-202ENST00000477243 USP35Q9P2H5 1018 aa4.37□□□□□ -1.71
HMGN4-202ENST00000477243 WWC3Q9ULE0 1092 aa4.37□□□□□ -1.71
HMGN4-202ENST00000477243 SETBP1Q9Y6X0 1596 aa4.36□□□□□ -1.71
HMGN4-202ENST00000477243 PPEF1O14829 653 aaPredicted RBP4.36□□□□□ -1.71
HMGN4-202ENST00000477243 RETREG2Q8NC44 543 aa4.36□□□□□ -1.71
HMGN4-202ENST00000477243 PCMTD1Q96MG8 357 aaPredicted RBP4.36□□□□□ -1.71
HMGN4-202ENST00000477243 CUL9Q8IWT3 2517 aa4.36□□□□□ -1.71
HMGN4-202ENST00000477243 PLEKHG3A1L390 1219 aa4.35□□□□□ -1.71
HMGN4-202ENST00000477243 CANXP27824 592 aaKnown RBP4.35□□□□□ -1.71
HMGN4-202ENST00000477243 MLLT1Q03111 559 aaPredicted RBP4.35□□□□□ -1.71
HMGN4-202ENST00000477243 ZNF428Q96B54 188 aa4.35□□□□□ -1.71
HMGN4-202ENST00000477243 PDE4AP27815 886 aa4.34□□□□□ -1.71
HMGN4-202ENST00000477243 KCNA1Q09470 495 aa4.34□□□□□ -1.71
HMGN4-202ENST00000477243 RBM26Q5T8P6 1007 aaKnown RBP4.34□□□□□ -1.71
HMGN4-202ENST00000477243 CHMP4AQ9BY43 222 aa4.34□□□□□ -1.71
HMGN4-202ENST00000477243 MYT1LQ9UL68 1186 aa4.34□□□□□ -1.71
HMGN4-202ENST00000477243 MINK1Q8N4C8 1332 aaPredicted RBP4.34□□□□□ -1.71
HMGN4-202ENST00000477243 RB1CC1Q8TDY2 1594 aa4.34□□□□□ -1.71
HMGN4-202ENST00000477243 EVX2Q03828 476 aa4.33□□□□□ -1.72
HMGN4-202ENST00000477243 IRF5Q13568 498 aa4.33□□□□□ -1.72
HMGN4-202ENST00000477243 FNBP4Q8N3X1 1017 aaPredicted RBP4.33□□□□□ -1.72
HMGN4-202ENST00000477243 SNAPC4Q5SXM2 1469 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms