RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 DOK7Q18PE1 504 aa13.37□□□□□ -0.27
CCDC88A-213ENST00000476903 ZNF710Q8N1W2 664 aa13.35□□□□□ -0.27
CCDC88A-213ENST00000476903 TRIM41Q8WV44 630 aa13.34□□□□□ -0.27
CCDC88A-213ENST00000476903 MICALL2Q8IY33 904 aa13.33□□□□□ -0.28
CCDC88A-213ENST00000476903 CECR2Q9BXF3 1484 aa13.33□□□□□ -0.28
CCDC88A-213ENST00000476903 ERBB3P21860 1342 aa13.33□□□□□ -0.28
CCDC88A-213ENST00000476903 MS4A4AQ96JQ5 239 aa13.32□□□□□ -0.28
CCDC88A-213ENST00000476903 RNF25Q96BH1 459 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-213ENST00000476903 VARS2Q5ST30 1063 aaKnown RBP13.27□□□□□ -0.29
CCDC88A-213ENST00000476903 GPR153Q6NV75 609 aa13.27□□□□□ -0.29
CCDC88A-213ENST00000476903 SOX12O15370 315 aa13.26□□□□□ -0.29
CCDC88A-213ENST00000476903 ZSWIM6Q9HCJ5 1215 aa13.25□□□□□ -0.29
CCDC88A-213ENST00000476903 RIMBP2O15034 1052 aa13.24□□□□□ -0.29
CCDC88A-213ENST00000476903 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-213ENST00000476903 RIOK3O14730 519 aaKnown RBP13.22□□□□□ -0.29
CCDC88A-213ENST00000476903 ZFP91Q96JP5 570 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-213ENST00000476903 PHF8Q9UPP1 1060 aa13.22□□□□□ -0.29
CCDC88A-213ENST00000476903 ZNF687Q8N1G0 1237 aa13.21□□□□□ -0.29
CCDC88A-213ENST00000476903 RNF166Q96A37 237 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-213ENST00000476903 VGFO15240 615 aaPredicted RBP13.15□□□□□ -0.3
CCDC88A-213ENST00000476903 MYT1LQ9UL68 1186 aa13.13□□□□□ -0.31
CCDC88A-213ENST00000476903 ARSIQ5FYB1 569 aa13.12□□□□□ -0.31
CCDC88A-213ENST00000476903 FBXO22Q8NEZ5 403 aa13.12□□□□□ -0.31
CCDC88A-213ENST00000476903 KHSRPQ92945 711 aaKnown RBP eCLIP13.09□□□□□ -0.31
CCDC88A-213ENST00000476903 SMARCA4P51532 1647 aa13.06□□□□□ -0.32
CCDC88A-213ENST00000476903 ZNF316A6NFI3 1004 aaPredicted RBP13.04□□□□□ -0.32
CCDC88A-213ENST00000476903 NLRP6P59044 892 aa13.04□□□□□ -0.32
CCDC88A-213ENST00000476903 KIF3CO14782 793 aa13.03□□□□□ -0.32
CCDC88A-213ENST00000476903 MFRPQ9BY79 579 aa13.02□□□□□ -0.33
CCDC88A-213ENST00000476903 NCAPD3P42695 1498 aa13.02□□□□□ -0.33
CCDC88A-213ENST00000476903 BAZ1AQ9NRL2 1556 aaPredicted RBP13.02□□□□□ -0.33
CCDC88A-213ENST00000476903 PTGER2P43116 358 aa13.01□□□□□ -0.33
CCDC88A-213ENST00000476903 BCL11BQ9C0K0 894 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-213ENST00000476903 SMARCA2P51531 1590 aa13□□□□□ -0.33
CCDC88A-213ENST00000476903 ATAD2BQ9ULI0 1458 aa13□□□□□ -0.33
CCDC88A-213ENST00000476903 ANKRD13DQ6ZTN6 518 aa12.98□□□□□ -0.33
CCDC88A-213ENST00000476903 POTEEQ6S8J3 1075 aa12.97□□□□□ -0.33
CCDC88A-213ENST00000476903 HMGXB3Q12766 1538 aa12.97□□□□□ -0.33
CCDC88A-213ENST00000476903 LSM11P83369 360 aaKnown RBP eCLIP12.96□□□□□ -0.33
CCDC88A-213ENST00000476903 C2orf72A6NCS6 295 aa12.95□□□□□ -0.34
CCDC88A-213ENST00000476903 STK24Q9Y6E0 443 aa12.93□□□□□ -0.34
CCDC88A-213ENST00000476903 PEG3Q9GZU2 1588 aa12.93□□□□□ -0.34
CCDC88A-213ENST00000476903 NUDT7P0C024 238 aa12.91□□□□□ -0.34
CCDC88A-213ENST00000476903 SLC34A2O95436 690 aa12.9□□□□□ -0.34
CCDC88A-213ENST00000476903 BAZ1BQ9UIG0 1483 aaKnown RBP12.9□□□□□ -0.34
CCDC88A-213ENST00000476903 MROH2BQ7Z745 1585 aa12.9□□□□□ -0.35
CCDC88A-213ENST00000476903 LHX6Q9UPM6 363 aa12.88□□□□□ -0.35
CCDC88A-213ENST00000476903 TAOK2Q9UL54 1235 aa12.87□□□□□ -0.35
CCDC88A-213ENST00000476903 PCDHGA4Q9Y5G9 962 aa12.87□□□□□ -0.35
CCDC88A-213ENST00000476903 PBX2P40425 430 aa12.86□□□□□ -0.35
CCDC88A-213ENST00000476903 STK25O00506 426 aa12.85□□□□□ -0.35
CCDC88A-213ENST00000476903 AXIN2Q9Y2T1 843 aa12.84□□□□□ -0.35
CCDC88A-213ENST00000476903 KDM4FA0A1W2PPD8 638 aa12.82□□□□□ -0.36
CCDC88A-213ENST00000476903 ERCC6Q03468 1493 aa12.79□□□□□ -0.36
CCDC88A-213ENST00000476903 WIZO95785 1651 aa12.78□□□□□ -0.36
CCDC88A-213ENST00000476903 PPP1R37O75864 691 aa12.78□□□□□ -0.36
CCDC88A-213ENST00000476903 RGL2O15211 777 aa12.76□□□□□ -0.37
CCDC88A-213ENST00000476903 NESP48681 1621 aa12.76□□□□□ -0.37
CCDC88A-213ENST00000476903 ECM2O94769 699 aaPredicted RBP12.75□□□□□ -0.37
CCDC88A-213ENST00000476903 PKD2Q13563 968 aa12.75□□□□□ -0.37
CCDC88A-213ENST00000476903 TMC2Q8TDI7 906 aa12.74□□□□□ -0.37
CCDC88A-213ENST00000476903 LAMC3Q9Y6N6 1575 aa12.73□□□□□ -0.37
CCDC88A-213ENST00000476903 CUX2O14529 1486 aa12.72□□□□□ -0.37
CCDC88A-213ENST00000476903 ARHGAP33O14559 1287 aa12.72□□□□□ -0.37
CCDC88A-213ENST00000476903 ADGRD1Q6QNK2 874 aa12.72□□□□□ -0.37
CCDC88A-213ENST00000476903 PTCD2Q8WV60 388 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-213ENST00000476903 PLA2G2EQ9NZK7 142 aa12.69□□□□□ -0.38
CCDC88A-213ENST00000476903 HCSTQ9UBK5 93 aa12.69□□□□□ -0.38
CCDC88A-213ENST00000476903 HRO43593 1189 aa12.68□□□□□ -0.38
CCDC88A-213ENST00000476903 RSF1Q96T23 1441 aaPredicted RBP12.68□□□□□ -0.38
CCDC88A-213ENST00000476903 DMRTA1Q5VZB9 504 aa12.67□□□□□ -0.38
CCDC88A-213ENST00000476903 KIF21AQ7Z4S6 1674 aa12.65□□□□□ -0.38
CCDC88A-213ENST00000476903 PSDA5PKW4 1024 aaPredicted RBP12.65□□□□□ -0.38
CCDC88A-213ENST00000476903 TK2O00142 265 aa12.65□□□□□ -0.38
CCDC88A-213ENST00000476903 THOC2Q8NI27 1593 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-213ENST00000476903 PDS5BQ9NTI5 1447 aa12.63□□□□□ -0.39
CCDC88A-213ENST00000476903 PSEN2P49810 448 aa12.63□□□□□ -0.39
CCDC88A-213ENST00000476903 FOXK1P85037 733 aa12.63□□□□□ -0.39
CCDC88A-213ENST00000476903 CADPSQ9ULU8 1353 aa12.63□□□□□ -0.39
CCDC88A-213ENST00000476903 TOP2AP11388 1531 aaKnown RBP12.62□□□□□ -0.39
CCDC88A-213ENST00000476903 PLPP6Q8IY26 295 aa12.59□□□□□ -0.39
CCDC88A-213ENST00000476903 GPHNQ9NQX3 736 aaPredicted RBP12.58□□□□□ -0.4
CCDC88A-213ENST00000476903 DSG2Q14126 1118 aa12.56□□□□□ -0.4
CCDC88A-213ENST00000476903 PPP4R3BQ5MIZ7 849 aa12.52□□□□□ -0.41
CCDC88A-213ENST00000476903 CFTRP13569 1480 aa12.52□□□□□ -0.41
CCDC88A-213ENST00000476903 MRC2Q9UBG0 1479 aa12.52□□□□□ -0.41
CCDC88A-213ENST00000476903 CEP164Q9UPV0 1460 aa12.51□□□□□ -0.41
CCDC88A-213ENST00000476903 PRDM2Q13029 1718 aa12.51□□□□□ -0.41
CCDC88A-213ENST00000476903 KCTD12Q96CX2 325 aaKnown RBP12.5□□□□□ -0.41
CCDC88A-213ENST00000476903 DNAJC5Q9H3Z4 198 aa12.5□□□□□ -0.41
CCDC88A-213ENST00000476903 FANCD2Q9BXW9 1451 aa12.5□□□□□ -0.41
CCDC88A-213ENST00000476903 WDR62O43379 1518 aa12.49□□□□□ -0.41
CCDC88A-213ENST00000476903 HS6ST3Q8IZP7 471 aa12.47□□□□□ -0.41
CCDC88A-213ENST00000476903 OXER1Q8TDS5 423 aa12.46□□□□□ -0.41
CCDC88A-213ENST00000476903 KCNK17Q96T54 332 aa12.46□□□□□ -0.41
CCDC88A-213ENST00000476903 VPS9D1Q9Y2B5 631 aa12.46□□□□□ -0.41
CCDC88A-213ENST00000476903 CCDC88BA6NC98 1476 aa12.46□□□□□ -0.42
CCDC88A-213ENST00000476903 TBC1D12O60347 775 aa12.45□□□□□ -0.42
CCDC88A-213ENST00000476903 SLC4A5Q9BY07 1137 aa12.41□□□□□ -0.42
CCDC88A-213ENST00000476903 BHMG1C9JSJ3 638 aaPredicted RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms