RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 EMP3P54852 163 aa10.54□□□□□ -0.72
PRPF40A-207ENST00000471701 HOXB3P14651 431 aaPredicted RBP10.53□□□□□ -0.72
PRPF40A-207ENST00000471701 PPP1R37O75864 691 aa10.52□□□□□ -0.73
PRPF40A-207ENST00000471701 RYDENQ9NUL5 291 aaKnown RBP10.52□□□□□ -0.73
PRPF40A-207ENST00000471701 TMC2Q8TDI7 906 aa10.5□□□□□ -0.73
PRPF40A-207ENST00000471701 DNAJC5Q9H3Z4 198 aa10.49□□□□□ -0.73
PRPF40A-207ENST00000471701 FAM205CA6NFA0 338 aa10.48□□□□□ -0.73
PRPF40A-207ENST00000471701 HOXB1P14653 301 aaPredicted RBP10.48□□□□□ -0.73
PRPF40A-207ENST00000471701 C2orf72A6NCS6 295 aa10.47□□□□□ -0.73
PRPF40A-207ENST00000471701 ZSWIM6Q9HCJ5 1215 aa10.47□□□□□ -0.73
PRPF40A-207ENST00000471701 NKX1-1Q15270 411 aaPredicted RBP10.45□□□□□ -0.74
PRPF40A-207ENST00000471701 ERBB3P21860 1342 aa10.43□□□□□ -0.74
PRPF40A-207ENST00000471701 KIF3CO14782 793 aa10.43□□□□□ -0.74
PRPF40A-207ENST00000471701 HS3ST6Q96QI5 342 aa10.43□□□□□ -0.74
PRPF40A-207ENST00000471701 AMER1Q5JTC6 1135 aaPredicted RBP10.41□□□□□ -0.74
PRPF40A-207ENST00000471701 ARSIQ5FYB1 569 aa10.4□□□□□ -0.74
PRPF40A-207ENST00000471701 GPR153Q6NV75 609 aa10.4□□□□□ -0.74
PRPF40A-207ENST00000471701 POTEB3A0JP26 581 aa10.36□□□□□ -0.75
PRPF40A-207ENST00000471701 POTEBQ6S5H4 581 aa10.36□□□□□ -0.75
PRPF40A-207ENST00000471701 GTPBP6O43824 516 aaPredicted RBP10.35□□□□□ -0.75
PRPF40A-207ENST00000471701 GPHNQ9NQX3 736 aaPredicted RBP10.35□□□□□ -0.75
PRPF40A-207ENST00000471701 SLC34A2O95436 690 aa10.34□□□□□ -0.75
PRPF40A-207ENST00000471701 VARS2Q5ST30 1063 aaKnown RBP10.34□□□□□ -0.75
PRPF40A-207ENST00000471701 FOXK1P85037 733 aa10.33□□□□□ -0.76
PRPF40A-207ENST00000471701 PLPP6Q8IY26 295 aa10.32□□□□□ -0.76
PRPF40A-207ENST00000471701 KHSRPQ92945 711 aaKnown RBP eCLIP10.32□□□□□ -0.76
PRPF40A-207ENST00000471701 PCDHGA4Q9Y5G9 962 aa10.31□□□□□ -0.76
PRPF40A-207ENST00000471701 PDE4AP27815 886 aa10.3□□□□□ -0.76
PRPF40A-207ENST00000471701 ZNF316A6NFI3 1004 aaPredicted RBP10.29□□□□□ -0.76
PRPF40A-207ENST00000471701 TBC1D12O60347 775 aa10.29□□□□□ -0.76
PRPF40A-207ENST00000471701 NUDT7P0C024 238 aa10.29□□□□□ -0.76
PRPF40A-207ENST00000471701 DSG2Q14126 1118 aa10.29□□□□□ -0.76
PRPF40A-207ENST00000471701 ZNF687Q8N1G0 1237 aa10.28□□□□□ -0.76
PRPF40A-207ENST00000471701 BBXQ8WY36 941 aaPredicted RBP10.28□□□□□ -0.76
PRPF40A-207ENST00000471701 RTN4Q9NQC3 1192 aaKnown RBP10.28□□□□□ -0.76
PRPF40A-207ENST00000471701 SPNS2Q8IVW8 549 aa10.27□□□□□ -0.77
PRPF40A-207ENST00000471701 PTCD2Q8WV60 388 aaKnown RBP10.25□□□□□ -0.77
PRPF40A-207ENST00000471701 KRTAP3-3Q9BYR6 98 aa10.25□□□□□ -0.77
PRPF40A-207ENST00000471701 KRTAP3-2Q9BYR7 98 aa10.25□□□□□ -0.77
PRPF40A-207ENST00000471701 CRISPLD2Q9H0B8 497 aa10.24□□□□□ -0.77
PRPF40A-207ENST00000471701 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.23□□□□□ -0.77
PRPF40A-207ENST00000471701 LARP6Q9BRS8 491 aaKnown RBP10.22□□□□□ -0.77
PRPF40A-207ENST00000471701 LHX6Q9UPM6 363 aa10.22□□□□□ -0.77
PRPF40A-207ENST00000471701 PPP1R15BQ5SWA1 713 aa10.21□□□□□ -0.77
PRPF40A-207ENST00000471701 MMRN1Q13201 1228 aa10.2□□□□□ -0.78
PRPF40A-207ENST00000471701 NCKAP5LQ9HCH0 1330 aa10.19□□□□□ -0.78
PRPF40A-207ENST00000471701 PSDA5PKW4 1024 aaPredicted RBP10.19□□□□□ -0.78
PRPF40A-207ENST00000471701 SPRYD3Q8NCJ5 442 aa10.19□□□□□ -0.78
PRPF40A-207ENST00000471701 DDX27Q96GQ7 796 aaKnown RBP10.19□□□□□ -0.78
PRPF40A-207ENST00000471701 UPF1Q92900 1129 aaKnown RBP eCLIP10.17□□□□□ -0.78
PRPF40A-207ENST00000471701 ANKRD13DQ6ZTN6 518 aa10.15□□□□□ -0.78
PRPF40A-207ENST00000471701 OXER1Q8TDS5 423 aa10.15□□□□□ -0.78
PRPF40A-207ENST00000471701 PBX2P40425 430 aa10.13□□□□□ -0.79
PRPF40A-207ENST00000471701 KDM4FA0A1W2PPD8 638 aa10.12□□□□□ -0.79
PRPF40A-207ENST00000471701 MAP3K9P80192 1104 aa10.11□□□□□ -0.79
PRPF40A-207ENST00000471701 MFSD10Q14728 455 aa10.11□□□□□ -0.79
PRPF40A-207ENST00000471701 CADPS2Q86UW7 1296 aa10.11□□□□□ -0.79
PRPF40A-207ENST00000471701 CFAP44Q96MT7 982 aa10.11□□□□□ -0.79
PRPF40A-207ENST00000471701 PPP4R3BQ5MIZ7 849 aa10.1□□□□□ -0.79
PRPF40A-207ENST00000471701 PAXIP1Q6ZW49 1069 aaPredicted RBP10.1□□□□□ -0.79
PRPF40A-207ENST00000471701 AXIN2Q9Y2T1 843 aa10.09□□□□□ -0.79
PRPF40A-207ENST00000471701 ARHGAP33O14559 1287 aa10.08□□□□□ -0.8
PRPF40A-207ENST00000471701 LSM11P83369 360 aaKnown RBP eCLIP10.08□□□□□ -0.8
PRPF40A-207ENST00000471701 PTGER2P43116 358 aa10.07□□□□□ -0.8
PRPF40A-207ENST00000471701 EVI5O60447 810 aa10.06□□□□□ -0.8
PRPF40A-207ENST00000471701 KCNH8Q96L42 1107 aa10.05□□□□□ -0.8
PRPF40A-207ENST00000471701 MYT1LQ9UL68 1186 aa10.05□□□□□ -0.8
PRPF40A-207ENST00000471701 POTEEQ6S8J3 1075 aa10.04□□□□□ -0.8
PRPF40A-207ENST00000471701 ZNF454Q8N9F8 522 aa10.04□□□□□ -0.8
PRPF40A-207ENST00000471701 ANO8Q9HCE9 1232 aaPredicted RBP10.04□□□□□ -0.8
PRPF40A-207ENST00000471701 RNF166Q96A37 237 aaPredicted RBP10.03□□□□□ -0.8
PRPF40A-207ENST00000471701 EMILIN3Q9NT22 766 aa10.02□□□□□ -0.81
PRPF40A-207ENST00000471701 PSEN2P49810 448 aa10□□□□□ -0.81
PRPF40A-207ENST00000471701 WDR70Q9NW82 654 aa10□□□□□ -0.81
PRPF40A-207ENST00000471701 STAC3Q96MF2 364 aa9.99□□□□□ -0.81
PRPF40A-207ENST00000471701 FOSBP53539 338 aa9.98□□□□□ -0.81
PRPF40A-207ENST00000471701 KCNK17Q96T54 332 aa9.98□□□□□ -0.81
PRPF40A-207ENST00000471701 TK2O00142 265 aa9.97□□□□□ -0.81
PRPF40A-207ENST00000471701 CAMK2BQ13554 666 aa9.97□□□□□ -0.81
PRPF40A-207ENST00000471701 ADGRD1Q6QNK2 874 aa9.97□□□□□ -0.81
PRPF40A-207ENST00000471701 DMRTA1Q5VZB9 504 aa9.96□□□□□ -0.82
PRPF40A-207ENST00000471701 ZDHHC16Q969W1 377 aa9.96□□□□□ -0.82
PRPF40A-207ENST00000471701 JPH4Q96JJ6 628 aa9.96□□□□□ -0.82
PRPF40A-207ENST00000471701 PTPREP23469 700 aa9.95□□□□□ -0.82
PRPF40A-207ENST00000471701 BCL2L12Q9HB09 334 aa9.95□□□□□ -0.82
PRPF40A-207ENST00000471701 DPYSL4O14531 572 aa9.93□□□□□ -0.82
PRPF40A-207ENST00000471701 E2F4Q16254 413 aa9.91□□□□□ -0.82
PRPF40A-207ENST00000471701 PHF14O94880 888 aa9.9□□□□□ -0.82
PRPF40A-207ENST00000471701 ADAM33Q9BZ11 813 aa9.9□□□□□ -0.82
PRPF40A-207ENST00000471701 PCDHGA10Q9Y5H3 936 aa9.9□□□□□ -0.82
PRPF40A-207ENST00000471701 TYW1BQ6NUM6 668 aa9.89□□□□□ -0.83
PRPF40A-207ENST00000471701 FBXW7Q969H0 707 aa9.89□□□□□ -0.83
PRPF40A-207ENST00000471701 HRO43593 1189 aa9.88□□□□□ -0.83
PRPF40A-207ENST00000471701 VPS9D1Q9Y2B5 631 aa9.88□□□□□ -0.83
PRPF40A-207ENST00000471701 EPAS1Q99814 870 aa9.87□□□□□ -0.83
PRPF40A-207ENST00000471701 SLC4A5Q9BY07 1137 aa9.87□□□□□ -0.83
PRPF40A-207ENST00000471701 SPDYE16A6NNV3 312 aaPredicted RBP9.86□□□□□ -0.83
PRPF40A-207ENST00000471701 DDX12PQ92771 950 aa9.84□□□□□ -0.83
PRPF40A-207ENST00000471701 ZBED2Q9BTP6 218 aa9.83□□□□□ -0.84
PRPF40A-207ENST00000471701 TSHZ2Q9NRE2 1034 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms