RNA–Protein interactions for RNA: ENST00000471181.6

BRCA1-210, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-210ENST00000471181 TSPY4P0CV99 314 aa8.72□□□□□ -1.01
BRCA1-210ENST00000471181 TSPY10P0CW01 314 aa8.72□□□□□ -1.01
BRCA1-210ENST00000471181 SOX12O15370 315 aa8.72□□□□□ -1.01
BRCA1-210ENST00000471181 RGL3Q3MIN7 710 aa8.72□□□□□ -1.01
BRCA1-210ENST00000471181 KIAA1211Q6ZU35 1233 aa8.72□□□□□ -1.01
BRCA1-210ENST00000471181 MIER1Q8N108 512 aa8.72□□□□□ -1.01
BRCA1-210ENST00000471181 PES1O00541 588 aaKnown RBP8.71□□□□□ -1.01
BRCA1-210ENST00000471181 HTATSF1O43719 755 aaKnown RBP8.71□□□□□ -1.02
BRCA1-210ENST00000471181 MARCH6O60337 910 aa8.7□□□□□ -1.02
BRCA1-210ENST00000471181 CCAR2Q8N163 923 aaKnown RBP8.7□□□□□ -1.02
BRCA1-210ENST00000471181 G3V3G9 751 aa8.69□□□□□ -1.02
BRCA1-210ENST00000471181 DCAF8Q5TAQ9 597 aa8.69□□□□□ -1.02
BRCA1-210ENST00000471181 POGKQ9P215 609 aa8.69□□□□□ -1.02
BRCA1-210ENST00000471181 MS4A1P11836 297 aa8.69□□□□□ -1.02
BRCA1-210ENST00000471181 GBP4Q96PP9 640 aa8.68□□□□□ -1.02
BRCA1-210ENST00000471181 SYAP1Q96A49 352 aaPredicted RBP8.68□□□□□ -1.02
BRCA1-210ENST00000471181 EIF4G1Q04637 1599 aaKnown RBP8.67□□□□□ -1.02
BRCA1-210ENST00000471181 CC2D1BQ5T0F9 858 aaKnown RBP8.67□□□□□ -1.02
BRCA1-210ENST00000471181 CCDC34Q96HJ3 373 aa8.67□□□□□ -1.02
BRCA1-210ENST00000471181 TPD52L1Q16890 204 aaPredicted RBP8.66□□□□□ -1.02
BRCA1-210ENST00000471181 GORABQ5T7V8 394 aa8.66□□□□□ -1.02
BRCA1-210ENST00000471181 NOL8Q76FK4 1167 aaKnown RBP8.66□□□□□ -1.02
BRCA1-210ENST00000471181 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.66□□□□□ -1.024e-6■■■■■ 85.3
BRCA1-210ENST00000471181 PPP4R2Q9NY27 417 aa8.66□□□□□ -1.02
BRCA1-210ENST00000471181 CHMP3Q9Y3E7 222 aa8.66□□□□□ -1.02
BRCA1-210ENST00000471181 CDCA8Q53HL2 280 aa8.65□□□□□ -1.02
BRCA1-210ENST00000471181 ZNF771Q7L3S4 317 aaPredicted RBP8.65□□□□□ -1.02
BRCA1-210ENST00000471181 KCNH8Q96L42 1107 aa8.65□□□□□ -1.03
BRCA1-210ENST00000471181 B4GALNT3Q6L9W6 998 aa8.64□□□□□ -1.03
BRCA1-210ENST00000471181 SMARCA4P51532 1647 aa8.64□□□□□ -1.03
BRCA1-210ENST00000471181 TOMM22Q9NS69 142 aa8.64□□□□□ -1.03
BRCA1-210ENST00000471181 RRP7BPQ9NSQ0 103 aa8.64□□□□□ -1.03
BRCA1-210ENST00000471181 FOXD4L1Q9NU39 408 aa8.64□□□□□ -1.03
BRCA1-210ENST00000471181 SLKQ9H2G2 1235 aaPredicted RBP8.64□□□□□ -1.03
BRCA1-210ENST00000471181 RTF1Q92541 710 aaKnown RBP8.63□□□□□ -1.03
BRCA1-210ENST00000471181 TSR1Q2NL82 804 aaKnown RBP8.63□□□□□ -1.03
BRCA1-210ENST00000471181 CCDC70Q6NSX1 233 aa8.63□□□□□ -1.03
BRCA1-210ENST00000471181 GOLGA6L3A6NEY3 463 aa8.63□□□□□ -1.03
BRCA1-210ENST00000471181 APPP05067 770 aa8.63□□□□□ -1.03
BRCA1-210ENST00000471181 CFAP44Q96MT7 982 aa8.62□□□□□ -1.03
BRCA1-210ENST00000471181 FOXD4L5Q5VV16 416 aaPredicted RBP8.62□□□□□ -1.03
BRCA1-210ENST00000471181 FOXD4L4Q8WXT5 416 aaPredicted RBP8.62□□□□□ -1.03
BRCA1-210ENST00000471181 TCEAL9Q9UHQ7 104 aa8.62□□□□□ -1.03
BRCA1-210ENST00000471181 TPM2P07951 284 aa8.62□□□□□ -1.03
BRCA1-210ENST00000471181 CCDC9Q9Y3X0 531 aaKnown RBP8.61□□□□□ -1.03
BRCA1-210ENST00000471181 GPS2Q13227 327 aa8.61□□□□□ -1.03
BRCA1-210ENST00000471181 PCMTD1Q96MG8 357 aaPredicted RBP8.61□□□□□ -1.03
BRCA1-210ENST00000471181 CARD11Q9BXL7 1154 aa8.61□□□□□ -1.03
BRCA1-210ENST00000471181 CSRNP3Q8WYN3 585 aa8.61□□□□□ -1.03
BRCA1-210ENST00000471181 CSPP1Q1MSJ5 1256 aa8.61□□□□□ -1.03
BRCA1-210ENST00000471181 RAD21O60216 631 aa8.6□□□□□ -1.03
BRCA1-210ENST00000471181 TRIM6-TRIM34B2RNG4 842 aa8.6□□□□□ -1.03
BRCA1-210ENST00000471181 CSB-PGBD3P0DP91 1061 aa8.6□□□□□ -1.03
BRCA1-210ENST00000471181 HSP90AA2PQ14568 343 aaPredicted RBP8.6□□□□□ -1.03
BRCA1-210ENST00000471181 SF3A1Q15459 793 aaKnown RBP8.6□□□□□ -1.03
BRCA1-210ENST00000471181 ZNF592Q92610 1267 aa8.6□□□□□ -1.03
BRCA1-210ENST00000471181 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.59□□□□□ -1.03
BRCA1-210ENST00000471181 FRAT2O75474 233 aaPredicted RBP8.59□□□□□ -1.03
BRCA1-210ENST00000471181 PLCD4Q9BRC7 762 aa8.59□□□□□ -1.03
BRCA1-210ENST00000471181 MFAP1P55081 439 aaKnown RBP8.59□□□□□ -1.03
BRCA1-210ENST00000471181 VSIG10Q8N0Z9 540 aa8.59□□□□□ -1.03
BRCA1-210ENST00000471181 GPATCH3Q96I76 525 aa8.58□□□□□ -1.04
BRCA1-210ENST00000471181 MAP7D2Q96T17 732 aa8.58□□□□□ -1.04
BRCA1-210ENST00000471181 PRDM2Q13029 1718 aa8.58□□□□□ -1.04
BRCA1-210ENST00000471181 CALD1Q05682 793 aaKnown RBP8.58□□□□□ -1.04
BRCA1-210ENST00000471181 ITPRIPQ8IWB1 547 aa8.58□□□□□ -1.04
BRCA1-210ENST00000471181 CTDP1Q9Y5B0 961 aaPredicted RBP8.58□□□□□ -1.04
BRCA1-210ENST00000471181 TPM1P09493 284 aa8.58□□□□□ -1.04
BRCA1-210ENST00000471181 MTUS2Q5JR59 1369 aa8.57□□□□□ -1.04
BRCA1-210ENST00000471181 BAZ1AQ9NRL2 1556 aaPredicted RBP8.57□□□□□ -1.04
BRCA1-210ENST00000471181 HMMRO75330 724 aa8.56□□□□□ -1.04
BRCA1-210ENST00000471181 PAK3O75914 559 aaPredicted RBP8.56□□□□□ -1.04
BRCA1-210ENST00000471181 PHF14O94880 888 aa8.56□□□□□ -1.04
BRCA1-210ENST00000471181 CWC22Q9HCG8 908 aaKnown RBP8.55□□□□□ -1.04
BRCA1-210ENST00000471181 H3BQV1 296 aa8.55□□□□□ -1.04
BRCA1-210ENST00000471181 IFFO2Q5TF58 517 aa8.55□□□□□ -1.04
BRCA1-210ENST00000471181 SAFB2Q14151 953 aaKnown RBP eCLIP8.55□□□□□ -1.041e-6■□□□□ 10.7
BRCA1-210ENST00000471181 TEX35Q5T0J7 233 aa8.55□□□□□ -1.04
BRCA1-210ENST00000471181 SRPK2P78362 688 aaKnown RBP8.55□□□□□ -1.04
BRCA1-210ENST00000471181 RUFY1Q96T51 708 aa8.55□□□□□ -1.04
BRCA1-210ENST00000471181 KIF16BQ96L93 1317 aa8.54□□□□□ -1.04
BRCA1-210ENST00000471181 GOLGA6L19H0YKK7 550 aa8.54□□□□□ -1.04
BRCA1-210ENST00000471181 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.54□□□□□ -1.04
BRCA1-210ENST00000471181 NAP1L1P55209 391 aaKnown RBP8.54□□□□□ -1.04
BRCA1-210ENST00000471181 AK7Q96M32 723 aa8.54□□□□□ -1.04
BRCA1-210ENST00000471181 TRIM34Q9BYJ4 488 aa8.54□□□□□ -1.04
BRCA1-210ENST00000471181 CT47A1Q5JQC4 288 aaPredicted RBP8.53□□□□□ -1.04
BRCA1-210ENST00000471181 ODF2Q5BJF6 829 aa8.53□□□□□ -1.04
BRCA1-210ENST00000471181 MORC1Q86VD1 984 aa8.53□□□□□ -1.04
BRCA1-210ENST00000471181 AKAP17AQ02040 695 aaKnown RBP8.53□□□□□ -1.04
BRCA1-210ENST00000471181 SKIDA1Q1XH10 827 aa8.53□□□□□ -1.04
BRCA1-210ENST00000471181 FOXD4L6Q3SYB3 417 aaPredicted RBP8.53□□□□□ -1.04
BRCA1-210ENST00000471181 FOXD4L3Q6VB84 417 aaPredicted RBP8.53□□□□□ -1.04
BRCA1-210ENST00000471181 CCDC191Q8NCU4 936 aa8.53□□□□□ -1.04
BRCA1-210ENST00000471181 IPO8O15397 1037 aaKnown RBP8.53□□□□□ -1.04
BRCA1-210ENST00000471181 BCL11BQ9C0K0 894 aaPredicted RBP8.53□□□□□ -1.04
BRCA1-210ENST00000471181 MROH2BQ7Z745 1585 aa8.53□□□□□ -1.04
BRCA1-210ENST00000471181 CDR1P51861 262 aa8.52□□□□□ -1.04
BRCA1-210ENST00000471181 BECN2A8MW95 431 aa8.52□□□□□ -1.05
BRCA1-210ENST00000471181 GTF2E1P29083 439 aaPredicted RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms