RNA–Protein interactions for RNA: ENST00000469043.1

SCFD1-205, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 696 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-205ENST00000469043 TMEM92Q6UXU6 159 aa12.17□□□□□ -0.46
SCFD1-205ENST00000469043 MFRPQ9BY79 579 aa12.16□□□□□ -0.46
SCFD1-205ENST00000469043 SPNS2Q8IVW8 549 aa12.13□□□□□ -0.47
SCFD1-205ENST00000469043 ZSWIM6Q9HCJ5 1215 aa12.13□□□□□ -0.47
SCFD1-205ENST00000469043 POTEB3A0JP26 581 aa12.12□□□□□ -0.47
SCFD1-205ENST00000469043 POTEBQ6S5H4 581 aa12.12□□□□□ -0.47
SCFD1-205ENST00000469043 ERBB3P21860 1342 aa12.11□□□□□ -0.47
SCFD1-205ENST00000469043 MMRN1Q13201 1228 aa12.07□□□□□ -0.48
SCFD1-205ENST00000469043 KRTAP3-3Q9BYR6 98 aa12.04□□□□□ -0.48
SCFD1-205ENST00000469043 KRTAP3-2Q9BYR7 98 aa12.04□□□□□ -0.48
SCFD1-205ENST00000469043 GPR153Q6NV75 609 aa12.03□□□□□ -0.48
SCFD1-205ENST00000469043 VARS2Q5ST30 1063 aaKnown RBP12.01□□□□□ -0.49
SCFD1-205ENST00000469043 ARSIQ5FYB1 569 aa12□□□□□ -0.49
SCFD1-205ENST00000469043 C2orf72A6NCS6 295 aa11.99□□□□□ -0.49
SCFD1-205ENST00000469043 KIF3CO14782 793 aa11.99□□□□□ -0.49
SCFD1-205ENST00000469043 TMC2Q8TDI7 906 aa11.99□□□□□ -0.49
SCFD1-205ENST00000469043 HS6ST3Q8IZP7 471 aa11.97□□□□□ -0.49
SCFD1-205ENST00000469043 ZNF687Q8N1G0 1237 aa11.95□□□□□ -0.5
SCFD1-205ENST00000469043 PPP1R37O75864 691 aa11.94□□□□□ -0.5
SCFD1-205ENST00000469043 CHGAP10645 457 aaKnown RBP11.94□□□□□ -0.5
SCFD1-205ENST00000469043 ZNF316A6NFI3 1004 aaPredicted RBP11.91□□□□□ -0.5
SCFD1-205ENST00000469043 SLC34A2O95436 690 aa11.9□□□□□ -0.5
SCFD1-205ENST00000469043 KHSRPQ92945 711 aaKnown RBP eCLIP11.9□□□□□ -0.5
SCFD1-205ENST00000469043 PCDHGA4Q9Y5G9 962 aa11.86□□□□□ -0.51
SCFD1-205ENST00000469043 NUDT7P0C024 238 aa11.85□□□□□ -0.51
SCFD1-205ENST00000469043 RYDENQ9NUL5 291 aaKnown RBP11.85□□□□□ -0.51
SCFD1-205ENST00000469043 DNAJC5Q9H3Z4 198 aa11.82□□□□□ -0.52
SCFD1-205ENST00000469043 FOXK1P85037 733 aa11.8□□□□□ -0.52
SCFD1-205ENST00000469043 GPHNQ9NQX3 736 aaPredicted RBP11.8□□□□□ -0.52
SCFD1-205ENST00000469043 LHX6Q9UPM6 363 aa11.8□□□□□ -0.52
SCFD1-205ENST00000469043 PTGER2P43116 358 aa11.78□□□□□ -0.52
SCFD1-205ENST00000469043 ANKRD13DQ6ZTN6 518 aa11.78□□□□□ -0.52
SCFD1-205ENST00000469043 PLPP6Q8IY26 295 aa11.78□□□□□ -0.52
SCFD1-205ENST00000469043 RNF166Q96A37 237 aaPredicted RBP11.77□□□□□ -0.53
SCFD1-205ENST00000469043 MYT1LQ9UL68 1186 aa11.77□□□□□ -0.53
SCFD1-205ENST00000469043 TBC1D12O60347 775 aa11.76□□□□□ -0.53
SCFD1-205ENST00000469043 PBX2P40425 430 aa11.76□□□□□ -0.53
SCFD1-205ENST00000469043 PTCD2Q8WV60 388 aaKnown RBP11.76□□□□□ -0.53
SCFD1-205ENST00000469043 PSDA5PKW4 1024 aaPredicted RBP11.75□□□□□ -0.53
SCFD1-205ENST00000469043 NKX1-1Q15270 411 aaPredicted RBP11.75□□□□□ -0.53
SCFD1-205ENST00000469043 LSM11P83369 360 aaKnown RBP eCLIP11.73□□□□□ -0.53
SCFD1-205ENST00000469043 DSG2Q14126 1118 aa11.72□□□□□ -0.53
SCFD1-205ENST00000469043 DCAF8L2P0C7V8 631 aa11.7□□□□□ -0.54
SCFD1-205ENST00000469043 AXIN2Q9Y2T1 843 aa11.67□□□□□ -0.54
SCFD1-205ENST00000469043 KDM4FA0A1W2PPD8 638 aa11.66□□□□□ -0.54
SCFD1-205ENST00000469043 ARHGAP33O14559 1287 aa11.65□□□□□ -0.54
SCFD1-205ENST00000469043 PDE4AP27815 886 aa11.65□□□□□ -0.54
SCFD1-205ENST00000469043 CRISPLD2Q9H0B8 497 aa11.64□□□□□ -0.55
SCFD1-205ENST00000469043 POTEEQ6S8J3 1075 aa11.63□□□□□ -0.55
SCFD1-205ENST00000469043 GTPBP6O43824 516 aaPredicted RBP11.62□□□□□ -0.55
SCFD1-205ENST00000469043 PPP4R3BQ5MIZ7 849 aa11.62□□□□□ -0.55
SCFD1-205ENST00000469043 PPP1R15BQ5SWA1 713 aa11.61□□□□□ -0.55
SCFD1-205ENST00000469043 OXER1Q8TDS5 423 aa11.6□□□□□ -0.55
SCFD1-205ENST00000469043 UPF1Q92900 1129 aaKnown RBP eCLIP11.59□□□□□ -0.55
SCFD1-205ENST00000469043 ADGRD1Q6QNK2 874 aa11.57□□□□□ -0.56
SCFD1-205ENST00000469043 KCNH8Q96L42 1107 aa11.57□□□□□ -0.56
SCFD1-205ENST00000469043 NCKAP5LQ9HCH0 1330 aa11.56□□□□□ -0.56
SCFD1-205ENST00000469043 TK2O00142 265 aa11.55□□□□□ -0.56
SCFD1-205ENST00000469043 LARP6Q9BRS8 491 aaKnown RBP11.55□□□□□ -0.56
SCFD1-205ENST00000469043 PSEN2P49810 448 aa11.54□□□□□ -0.56
SCFD1-205ENST00000469043 DDX27Q96GQ7 796 aaKnown RBP11.53□□□□□ -0.56
SCFD1-205ENST00000469043 STAC3Q96MF2 364 aa11.52□□□□□ -0.57
SCFD1-205ENST00000469043 DMRTA1Q5VZB9 504 aa11.51□□□□□ -0.57
SCFD1-205ENST00000469043 ZNF454Q8N9F8 522 aa11.5□□□□□ -0.57
SCFD1-205ENST00000469043 MAP3K9P80192 1104 aa11.48□□□□□ -0.57
SCFD1-205ENST00000469043 KCNK17Q96T54 332 aa11.48□□□□□ -0.57
SCFD1-205ENST00000469043 HCSTQ9UBK5 93 aa11.48□□□□□ -0.57
SCFD1-205ENST00000469043 ANO8Q9HCE9 1232 aaPredicted RBP11.47□□□□□ -0.57
SCFD1-205ENST00000469043 EVI5O60447 810 aa11.46□□□□□ -0.57
SCFD1-205ENST00000469043 MFSD10Q14728 455 aa11.46□□□□□ -0.57
SCFD1-205ENST00000469043 HRO43593 1189 aa11.45□□□□□ -0.58
SCFD1-205ENST00000469043 FOSBP53539 338 aa11.44□□□□□ -0.58
SCFD1-205ENST00000469043 BCL2L12Q9HB09 334 aa11.44□□□□□ -0.58
SCFD1-205ENST00000469043 PTPREP23469 700 aa11.42□□□□□ -0.58
SCFD1-205ENST00000469043 JPH4Q96JJ6 628 aa11.42□□□□□ -0.58
SCFD1-205ENST00000469043 ZDHHC16Q969W1 377 aa11.4□□□□□ -0.58
SCFD1-205ENST00000469043 VPS9D1Q9Y2B5 631 aa11.4□□□□□ -0.58
SCFD1-205ENST00000469043 BBXQ8WY36 941 aaPredicted RBP11.39□□□□□ -0.59
SCFD1-205ENST00000469043 SLC4A5Q9BY07 1137 aa11.39□□□□□ -0.59
SCFD1-205ENST00000469043 CADPS2Q86UW7 1296 aa11.38□□□□□ -0.59
SCFD1-205ENST00000469043 KCTD12Q96CX2 325 aaKnown RBP11.37□□□□□ -0.59
SCFD1-205ENST00000469043 EMILIN3Q9NT22 766 aa11.37□□□□□ -0.59
SCFD1-205ENST00000469043 PLA2G2EQ9NZK7 142 aa11.35□□□□□ -0.59
SCFD1-205ENST00000469043 ADAM33Q9BZ11 813 aa11.34□□□□□ -0.59
SCFD1-205ENST00000469043 GOLGA8CPA6NN73 597 aa11.32□□□□□ -0.6
SCFD1-205ENST00000469043 ZBED2Q9BTP6 218 aa11.32□□□□□ -0.6
SCFD1-205ENST00000469043 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.3□□□□□ -0.6
SCFD1-205ENST00000469043 PCDHGA10Q9Y5H3 936 aa11.3□□□□□ -0.6
SCFD1-205ENST00000469043 BHMG1C9JSJ3 638 aaPredicted RBP11.29□□□□□ -0.6
SCFD1-205ENST00000469043 AMER1Q5JTC6 1135 aaPredicted RBP11.29□□□□□ -0.6
SCFD1-205ENST00000469043 MRPL50Q8N5N7 158 aaKnown RBP11.29□□□□□ -0.6
SCFD1-205ENST00000469043 SPRYD3Q8NCJ5 442 aa11.29□□□□□ -0.6
SCFD1-205ENST00000469043 FBXW7Q969H0 707 aa11.29□□□□□ -0.6
SCFD1-205ENST00000469043 PHF14O94880 888 aa11.28□□□□□ -0.6
SCFD1-205ENST00000469043 PTPN5P54829 565 aa11.28□□□□□ -0.6
SCFD1-205ENST00000469043 CAMK2BQ13554 666 aa11.28□□□□□ -0.6
SCFD1-205ENST00000469043 TYW1BQ6NUM6 668 aa11.28□□□□□ -0.6
SCFD1-205ENST00000469043 NBPF3Q9H094 633 aa11.27□□□□□ -0.61
SCFD1-205ENST00000469043 PPP1R3GB7ZBB8 358 aa11.25□□□□□ -0.61
SCFD1-205ENST00000469043 DPYSL4O14531 572 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms