RNA–Protein interactions for RNA: ENST00000465563.5

SMC4-205, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 747 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-205ENST00000465563 RIMBP2O15034 1052 aa15.84■□□□□ 0.13
SMC4-205ENST00000465563 PPP1R37O75864 691 aa15.84■□□□□ 0.13
SMC4-205ENST00000465563 DNAJC5Q9H3Z4 198 aa15.82■□□□□ 0.12
SMC4-205ENST00000465563 HOXB1P14653 301 aaPredicted RBP15.79■□□□□ 0.12
SMC4-205ENST00000465563 C2orf72A6NCS6 295 aa15.76■□□□□ 0.11
SMC4-205ENST00000465563 KIF3CO14782 793 aa15.76■□□□□ 0.11
SMC4-205ENST00000465563 DCAF8L2P0C7V8 631 aa15.76■□□□□ 0.11
SMC4-205ENST00000465563 ZSWIM6Q9HCJ5 1215 aa15.76■□□□□ 0.11
SMC4-205ENST00000465563 FAM205CA6NFA0 338 aa15.75■□□□□ 0.11
SMC4-205ENST00000465563 NKX1-1Q15270 411 aaPredicted RBP15.75■□□□□ 0.11
SMC4-205ENST00000465563 TMC2Q8TDI7 906 aa15.74■□□□□ 0.11
SMC4-205ENST00000465563 RYDENQ9NUL5 291 aaKnown RBP15.74■□□□□ 0.11
SMC4-205ENST00000465563 HS3ST6Q96QI5 342 aa15.72■□□□□ 0.11
SMC4-205ENST00000465563 POTEB3A0JP26 581 aa15.68■□□□□ 0.1
SMC4-205ENST00000465563 GPR153Q6NV75 609 aa15.68■□□□□ 0.1
SMC4-205ENST00000465563 POTEBQ6S5H4 581 aa15.68■□□□□ 0.1
SMC4-205ENST00000465563 ERBB3P21860 1342 aa15.67■□□□□ 0.1
SMC4-205ENST00000465563 ARSIQ5FYB1 569 aa15.63■□□□□ 0.09
SMC4-205ENST00000465563 GTPBP6O43824 516 aaPredicted RBP15.57■□□□□ 0.08
SMC4-205ENST00000465563 SLC34A2O95436 690 aa15.57■□□□□ 0.08
SMC4-205ENST00000465563 VARS2Q5ST30 1063 aaKnown RBP15.57■□□□□ 0.08
SMC4-205ENST00000465563 GPHNQ9NQX3 736 aaPredicted RBP15.57■□□□□ 0.08
SMC4-205ENST00000465563 AMER1Q5JTC6 1135 aaPredicted RBP15.56■□□□□ 0.08
SMC4-205ENST00000465563 KHSRPQ92945 711 aaKnown RBP eCLIP15.55■□□□□ 0.081e-8■■□□□ 14.5
SMC4-205ENST00000465563 FOXK1P85037 733 aa15.54■□□□□ 0.08
SMC4-205ENST00000465563 KRTAP3-3Q9BYR6 98 aa15.53■□□□□ 0.08
SMC4-205ENST00000465563 KRTAP3-2Q9BYR7 98 aa15.53■□□□□ 0.08
SMC4-205ENST00000465563 PCDHGA4Q9Y5G9 962 aa15.51■□□□□ 0.07
SMC4-205ENST00000465563 PLPP6Q8IY26 295 aa15.5■□□□□ 0.07
SMC4-205ENST00000465563 SPNS2Q8IVW8 549 aa15.49■□□□□ 0.07
SMC4-205ENST00000465563 ZNF316A6NFI3 1004 aaPredicted RBP15.48■□□□□ 0.07
SMC4-205ENST00000465563 DSG2Q14126 1118 aa15.48■□□□□ 0.07
SMC4-205ENST00000465563 NUDT7P0C024 238 aa15.47■□□□□ 0.07
SMC4-205ENST00000465563 ZNF687Q8N1G0 1237 aa15.46■□□□□ 0.07
SMC4-205ENST00000465563 RTN4Q9NQC3 1192 aaKnown RBP15.45■□□□□ 0.06
SMC4-205ENST00000465563 PTCD2Q8WV60 388 aaKnown RBP15.44■□□□□ 0.06
SMC4-205ENST00000465563 CRISPLD2Q9H0B8 497 aa15.44■□□□□ 0.06
SMC4-205ENST00000465563 PDE4AP27815 886 aa15.4■□□□□ 0.06
SMC4-205ENST00000465563 MMRN1Q13201 1228 aa15.39■□□□□ 0.05
SMC4-205ENST00000465563 BBXQ8WY36 941 aaPredicted RBP15.38■□□□□ 0.05
SMC4-205ENST00000465563 LHX6Q9UPM6 363 aa15.38■□□□□ 0.05
SMC4-205ENST00000465563 NCKAP5LQ9HCH0 1330 aa15.38■□□□□ 0.05
SMC4-205ENST00000465563 TBC1D12O60347 775 aa15.37■□□□□ 0.05
SMC4-205ENST00000465563 PPP1R15BQ5SWA1 713 aa15.36■□□□□ 0.05
SMC4-205ENST00000465563 KDM4FA0A1W2PPD8 638 aa15.32■□□□□ 0.04
SMC4-205ENST00000465563 LARP6Q9BRS8 491 aaKnown RBP15.32■□□□□ 0.04
SMC4-205ENST00000465563 PSDA5PKW4 1024 aaPredicted RBP15.29■□□□□ 0.04
SMC4-205ENST00000465563 OXER1Q8TDS5 423 aa15.29■□□□□ 0.04
SMC4-205ENST00000465563 DDX27Q96GQ7 796 aaKnown RBP15.28■□□□□ 0.04
SMC4-205ENST00000465563 UPF1Q92900 1129 aaKnown RBP eCLIP15.27■□□□□ 0.04
SMC4-205ENST00000465563 PBX2P40425 430 aa15.25■□□□□ 0.03
SMC4-205ENST00000465563 MFSD10Q14728 455 aa15.24■□□□□ 0.03
SMC4-205ENST00000465563 CADPS2Q86UW7 1296 aa15.24■□□□□ 0.03
SMC4-205ENST00000465563 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.24■□□□□ 0.03
SMC4-205ENST00000465563 ANKRD13DQ6ZTN6 518 aa15.22■□□□□ 0.03
SMC4-205ENST00000465563 SPRYD3Q8NCJ5 442 aa15.21■□□□□ 0.03
SMC4-205ENST00000465563 LSM11P83369 360 aaKnown RBP eCLIP15.2■□□□□ 0.02
SMC4-205ENST00000465563 POTEEQ6S8J3 1075 aa15.18■□□□□ 0.02
SMC4-205ENST00000465563 AXIN2Q9Y2T1 843 aa15.18■□□□□ 0.02
SMC4-205ENST00000465563 PPP4R3BQ5MIZ7 849 aa15.17■□□□□ 0.02
SMC4-205ENST00000465563 PTGER2P43116 358 aa15.15■□□□□ 0.02
SMC4-205ENST00000465563 ARHGAP33O14559 1287 aa15.14■□□□□ 0.01
SMC4-205ENST00000465563 MYT1LQ9UL68 1186 aa15.13■□□□□ 0.01
SMC4-205ENST00000465563 MAP3K9P80192 1104 aa15.12■□□□□ 0.01
SMC4-205ENST00000465563 EVI5O60447 810 aa15.1■□□□□ 0.01
SMC4-205ENST00000465563 RNF166Q96A37 237 aaPredicted RBP15.1■□□□□ 0.01
SMC4-205ENST00000465563 PAXIP1Q6ZW49 1069 aaPredicted RBP15.09■□□□□ 0.01
SMC4-205ENST00000465563 CFAP44Q96MT7 982 aa15.09■□□□□ 0.01
SMC4-205ENST00000465563 ANO8Q9HCE9 1232 aaPredicted RBP15.09■□□□□ 0.01
SMC4-205ENST00000465563 EMILIN3Q9NT22 766 aa15.09■□□□□ 0.01
SMC4-205ENST00000465563 ZNF454Q8N9F8 522 aa15.08■□□□□ 0
SMC4-205ENST00000465563 PSEN2P49810 448 aa15.05■□□□□ -0
SMC4-205ENST00000465563 KCNH8Q96L42 1107 aa15.04■□□□□ -0
SMC4-205ENST00000465563 FOSBP53539 338 aa15.03■□□□□ -0
SMC4-205ENST00000465563 CAMK2BQ13554 666 aa15.02■□□□□ -0
SMC4-205ENST00000465563 ADGRD1Q6QNK2 874 aa15.02■□□□□ -0
SMC4-205ENST00000465563 KCNK17Q96T54 332 aa15.02■□□□□ -0
SMC4-205ENST00000465563 DMRTA1Q5VZB9 504 aa15.01□□□□□ -0.01
SMC4-205ENST00000465563 JPH4Q96JJ6 628 aa15.01□□□□□ -0.01
SMC4-205ENST00000465563 TK2O00142 265 aa15□□□□□ -0.01
SMC4-205ENST00000465563 BCL2L12Q9HB09 334 aa14.99□□□□□ -0.01
SMC4-205ENST00000465563 ZDHHC16Q969W1 377 aa14.95□□□□□ -0.02
SMC4-205ENST00000465563 DPYSL4O14531 572 aa14.93□□□□□ -0.02
SMC4-205ENST00000465563 PTPREP23469 700 aa14.93□□□□□ -0.02
SMC4-205ENST00000465563 ADAM33Q9BZ11 813 aa14.91□□□□□ -0.02
SMC4-205ENST00000465563 HRO43593 1189 aa14.9□□□□□ -0.02
SMC4-205ENST00000465563 WDR70Q9NW82 654 aa14.89□□□□□ -0.03
SMC4-205ENST00000465563 PCDHGA10Q9Y5H3 936 aa14.89□□□□□ -0.03
SMC4-205ENST00000465563 STAC3Q96MF2 364 aa14.88□□□□□ -0.03
SMC4-205ENST00000465563 VPS9D1Q9Y2B5 631 aa14.87□□□□□ -0.03
SMC4-205ENST00000465563 PHF14O94880 888 aa14.86□□□□□ -0.03
SMC4-205ENST00000465563 SLC4A5Q9BY07 1137 aa14.86□□□□□ -0.03
SMC4-205ENST00000465563 TYW1BQ6NUM6 668 aa14.85□□□□□ -0.03
SMC4-205ENST00000465563 FBXW7Q969H0 707 aa14.85□□□□□ -0.03
SMC4-205ENST00000465563 E2F4Q16254 413 aa14.84□□□□□ -0.03
SMC4-205ENST00000465563 EPAS1Q99814 870 aa14.81□□□□□ -0.04
SMC4-205ENST00000465563 ZBED2Q9BTP6 218 aa14.81□□□□□ -0.04
SMC4-205ENST00000465563 SPDYE16A6NNV3 312 aaPredicted RBP14.78□□□□□ -0.04
SMC4-205ENST00000465563 PDIA6Q15084 440 aa14.78□□□□□ -0.04
SMC4-205ENST00000465563 PPP1R3GB7ZBB8 358 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms