RNA–Protein interactions for RNA: ENST00000459727.5

HDAC3-202, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-202ENST00000459727 TRIM52Q96A61 297 aa12.39□□□□□ -0.43
HDAC3-202ENST00000459727 SHANK2Q9UPX8 1470 aa12.39□□□□□ -0.43
HDAC3-202ENST00000459727 CEP170Q5SW79 1584 aa12.39□□□□□ -0.43
HDAC3-202ENST00000459727 MPHOSPH9Q99550 1183 aa12.38□□□□□ -0.43
HDAC3-202ENST00000459727 RRP7BPQ9NSQ0 103 aa12.38□□□□□ -0.43
HDAC3-202ENST00000459727 EIF4G2P78344 907 aaKnown RBP eCLIP12.37□□□□□ -0.43
HDAC3-202ENST00000459727 CHMP7Q8WUX9 453 aaPredicted RBP12.37□□□□□ -0.43
HDAC3-202ENST00000459727 CAMSAP2Q08AD1 1489 aa12.37□□□□□ -0.43
HDAC3-202ENST00000459727 CROCC2H7BZ55 1655 aa12.36□□□□□ -0.43
HDAC3-202ENST00000459727 OSCARQ8IYS5 282 aa12.36□□□□□ -0.43
HDAC3-202ENST00000459727 SUPT16HQ9Y5B9 1047 aaKnown RBP12.36□□□□□ -0.43
HDAC3-202ENST00000459727 RIMBP3CA6NJZ7 1639 aa12.36□□□□□ -0.43
HDAC3-202ENST00000459727 RIMBP3BA6NNM3 1639 aa12.36□□□□□ -0.43
HDAC3-202ENST00000459727 KIF14Q15058 1648 aa12.36□□□□□ -0.43
HDAC3-202ENST00000459727 RIMBP3Q9UFD9 1639 aa12.36□□□□□ -0.43
HDAC3-202ENST00000459727 DENND4BO75064 1496 aaPredicted RBP12.35□□□□□ -0.43
HDAC3-202ENST00000459727 ANKRD30AQ9BXX3 1397 aa12.35□□□□□ -0.43
HDAC3-202ENST00000459727 NEFLP07196 543 aa12.35□□□□□ -0.43
HDAC3-202ENST00000459727 ANKRD30BQ9BXX2 1392 aa12.34□□□□□ -0.43
HDAC3-202ENST00000459727 GPATCH8Q9UKJ3 1502 aaKnown RBP12.34□□□□□ -0.43
HDAC3-202ENST00000459727 ABCA8O94911 1581 aa12.34□□□□□ -0.43
HDAC3-202ENST00000459727 CFDP1Q9UEE9 299 aaPredicted RBP12.33□□□□□ -0.44
HDAC3-202ENST00000459727 CHIC2Q9UKJ5 165 aa12.33□□□□□ -0.44
HDAC3-202ENST00000459727 TEX14Q8IWB6 1497 aa12.33□□□□□ -0.44
HDAC3-202ENST00000459727 NCOA1Q15788 1441 aa12.32□□□□□ -0.44
HDAC3-202ENST00000459727 KDM6BO15054 1643 aa12.32□□□□□ -0.44
HDAC3-202ENST00000459727 CNTLNQ9NXG0 1405 aa12.31□□□□□ -0.44
HDAC3-202ENST00000459727 KIAA1107Q9UPP5 1409 aa12.3□□□□□ -0.44
HDAC3-202ENST00000459727 PRG4Q92954 1404 aaPredicted RBP12.29□□□□□ -0.44
HDAC3-202ENST00000459727 PLB1Q6P1J6 1458 aa12.29□□□□□ -0.44
HDAC3-202ENST00000459727 KDM5DQ9BY66 1539 aa12.29□□□□□ -0.44
HDAC3-202ENST00000459727 JPH4Q96JJ6 628 aa12.29□□□□□ -0.44
HDAC3-202ENST00000459727 SLC4A1APQ9BWU0 796 aaKnown RBP12.29□□□□□ -0.44
HDAC3-202ENST00000459727 ARHGEF5Q12774 1597 aa12.29□□□□□ -0.44
HDAC3-202ENST00000459727 ARID4BQ4LE39 1312 aaPredicted RBP12.29□□□□□ -0.44
HDAC3-202ENST00000459727 POLR1AO95602 1720 aaPredicted RBP12.28□□□□□ -0.44
HDAC3-202ENST00000459727 PLEKHD1A6NEE1 506 aa12.28□□□□□ -0.44
HDAC3-202ENST00000459727 PZPP20742 1482 aa12.27□□□□□ -0.44
HDAC3-202ENST00000459727 ARHGEF12Q9NZN5 1544 aa12.27□□□□□ -0.44
HDAC3-202ENST00000459727 HSPA5P11021 654 aaKnown RBP12.27□□□□□ -0.45
HDAC3-202ENST00000459727 RSPH4AQ5TD94 716 aa12.27□□□□□ -0.45
HDAC3-202ENST00000459727 ABCC10Q5T3U5 1492 aa12.27□□□□□ -0.45
HDAC3-202ENST00000459727 L3MBTL2Q969R5 705 aa12.26□□□□□ -0.45
HDAC3-202ENST00000459727 MBD5Q9P267 1494 aa12.26□□□□□ -0.45
HDAC3-202ENST00000459727 CCDC7Q96M83 1385 aa12.25□□□□□ -0.45
HDAC3-202ENST00000459727 ANKRD50Q9ULJ7 1429 aa12.25□□□□□ -0.45
HDAC3-202ENST00000459727 C9orf84Q5VXU9 1444 aa12.24□□□□□ -0.45
HDAC3-202ENST00000459727 ERICH6BQ5W0A0 696 aa12.24□□□□□ -0.45
HDAC3-202ENST00000459727 WASHC2AQ641Q2 1341 aa12.24□□□□□ -0.45
HDAC3-202ENST00000459727 ATP10BO94823 1461 aa12.23□□□□□ -0.45
HDAC3-202ENST00000459727 ROCK2O75116 1388 aaKnown RBP12.23□□□□□ -0.45
HDAC3-202ENST00000459727 CDC42BPAQ5VT25 1732 aa12.23□□□□□ -0.45
HDAC3-202ENST00000459727 PLEKHH2Q8IVE3 1493 aa12.22□□□□□ -0.45
HDAC3-202ENST00000459727 UHRF1BP1Q6BDS2 1440 aa12.22□□□□□ -0.45
HDAC3-202ENST00000459727 SPATA31E1Q6ZUB1 1445 aa12.22□□□□□ -0.45
HDAC3-202ENST00000459727 ARID3CA6NKF2 412 aa12.21□□□□□ -0.45
HDAC3-202ENST00000459727 TSPY4P0CV99 314 aa12.21□□□□□ -0.45
HDAC3-202ENST00000459727 TSPY10P0CW01 314 aa12.21□□□□□ -0.45
HDAC3-202ENST00000459727 KCNH8Q96L42 1107 aa12.21□□□□□ -0.45
HDAC3-202ENST00000459727 CCDC141Q6ZP82 1450 aa12.21□□□□□ -0.46
HDAC3-202ENST00000459727 PTPRGP23470 1445 aa12.2□□□□□ -0.46
HDAC3-202ENST00000459727 ZNF644Q9H582 1327 aaPredicted RBP12.2□□□□□ -0.46
HDAC3-202ENST00000459727 PREX2Q70Z35 1606 aa12.2□□□□□ -0.46
HDAC3-202ENST00000459727 HIRIP3Q9BW71 556 aaPredicted RBP12.2□□□□□ -0.46
HDAC3-202ENST00000459727 MAST1Q9Y2H9 1570 aa12.2□□□□□ -0.46
HDAC3-202ENST00000459727 RALGAPBQ86X10 1494 aa12.2□□□□□ -0.46
HDAC3-202ENST00000459727 FBLN2P98095 1184 aa12.19□□□□□ -0.46
HDAC3-202ENST00000459727 SHROOM2Q13796 1616 aa12.18□□□□□ -0.46
HDAC3-202ENST00000459727 FKBP8Q14318 412 aa12.17□□□□□ -0.46
HDAC3-202ENST00000459727 KTN1Q86UP2 1357 aaKnown RBP12.17□□□□□ -0.46
HDAC3-202ENST00000459727 KIF15Q9NS87 1388 aa12.17□□□□□ -0.46
HDAC3-202ENST00000459727 HNRNPUQ00839 825 aaKnown RBP eCLIP12.15□□□□□ -0.46
HDAC3-202ENST00000459727 PRKRIP1Q9H875 184 aaPredicted RBP12.15□□□□□ -0.46
HDAC3-202ENST00000459727 ZNF777Q9ULD5 760 aaPredicted RBP12.15□□□□□ -0.46
HDAC3-202ENST00000459727 NUP155O75694 1391 aa12.15□□□□□ -0.46
HDAC3-202ENST00000459727 USP47Q96K76 1375 aa12.15□□□□□ -0.46
HDAC3-202ENST00000459727 PLXNC1O60486 1568 aa12.14□□□□□ -0.47
HDAC3-202ENST00000459727 PKD2Q13563 968 aa12.14□□□□□ -0.47
HDAC3-202ENST00000459727 KDM5CP41229 1560 aa12.13□□□□□ -0.47
HDAC3-202ENST00000459727 KIF7Q2M1P5 1343 aa12.13□□□□□ -0.47
HDAC3-202ENST00000459727 NBPF8Q3BBV2 869 aa12.13□□□□□ -0.47
HDAC3-202ENST00000459727 UNC13BO14795 1591 aa12.13□□□□□ -0.47
HDAC3-202ENST00000459727 ZBED9Q6R2W3 1325 aa12.12□□□□□ -0.47
HDAC3-202ENST00000459727 ABCC2Q92887 1545 aa12.12□□□□□ -0.47
HDAC3-202ENST00000459727 FOXD1Q16676 465 aa12.12□□□□□ -0.47
HDAC3-202ENST00000459727 SAMD9LQ8IVG5 1584 aa12.12□□□□□ -0.47
HDAC3-202ENST00000459727 TSHZ2Q9NRE2 1034 aa12.1□□□□□ -0.47
HDAC3-202ENST00000459727 FAM135AQ9P2D6 1515 aa12.1□□□□□ -0.47
HDAC3-202ENST00000459727 UHRF1BP1LA0JNW5 1464 aa12.09□□□□□ -0.47
HDAC3-202ENST00000459727 LAMC1P11047 1609 aa12.09□□□□□ -0.47
HDAC3-202ENST00000459727 EIF2AK4Q9P2K8 1649 aaKnown RBP12.09□□□□□ -0.47
HDAC3-202ENST00000459727 MRS2Q9HD23 443 aa12.09□□□□□ -0.47
HDAC3-202ENST00000459727 ARHGAP5Q13017 1502 aa12.09□□□□□ -0.47
HDAC3-202ENST00000459727 ERBINQ96RT1 1412 aa12.09□□□□□ -0.47
HDAC3-202ENST00000459727 MYO5CQ9NQX4 1742 aa12.08□□□□□ -0.47
HDAC3-202ENST00000459727 ARAP3Q8WWN8 1544 aa12.08□□□□□ -0.48
HDAC3-202ENST00000459727 DUOX2Q9NRD8 1548 aa12.08□□□□□ -0.48
HDAC3-202ENST00000459727 CHD1O14646 1710 aa12.08□□□□□ -0.48
HDAC3-202ENST00000459727 CDC42BPBQ9Y5S2 1711 aa12.08□□□□□ -0.48
HDAC3-202ENST00000459727 CCDC144AA2RUR9 1427 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms